Prupe.1G502200_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Reverse (-)
41545327 .. 41545940
614 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G502200.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 300 bp
ATGGCAAGAGGTAATGGAGAAGGAGGCAAAGGCATAAGTAGAGGAAGAGGTAATGTTGCTCAAGCCCCTGTTTACCCAAATTCACAAGAAAGTGTGACAAGAGGTAATGGACAAGGAGTCTTACCATCTTCACATAATGGCTTAGGAAGAGGTTTACCATTTTCAAAGCTAAGTGCAATTAGAGGAAGAGGCTTAGGAAGAGGCATAAGTGAAGGAAGAGGCTTACCATCTTCACGACCAACTATAGGTGGTAAGAGAAAGGGGACAAGGAGGACCAGCTTTGGACAACATTTCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

100

Amino Acids

10.21

Weight (kDa)

12.0

Isoelectric Point (pI)

36.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 79
AfiI CCNNNNNNNGG 1 cut(s) 245
AgsI TTSAA 1 cut(s) 165
AhdI GACNNNNNGTC 1 cut(s) 116
AluBI AGCT 2 cut(s) 169, 279
AluI AGCT 2 cut(s) 169, 279
ApoI RAATTY 1 cut(s) 79
AspS9I GGNCC 1 cut(s) 273
AvaII GGWCC 1 cut(s) 273
BccI CCATC 2 cut(s) 133, 235
BfmI CTRYAG 1 cut(s) 243
Bme18I GGWCC 1 cut(s) 273
BmeRI GACNNNNNGTC 1 cut(s) 116
BmgT120I GGNCC 1 cut(s) 273
Bpu10I CCTNAGC 2 cut(s) 142, 193
BpuEI CTTGAG 1 cut(s) 45
Bsc4I CCNNNNNNNGG 1 cut(s) 245
BseLI CCNNNNNNNGG 1 cut(s) 245
BslFI GGGAC 1 cut(s) 277
BslI CCNNNNNNNGG 1 cut(s) 245
BsmFI GGGAC 1 cut(s) 277
Bst6I CTCTTC 5 cut(s) 40, 142, 181, 193, 211
BstDEI CTNAG 3 cut(s) 142, 170, 193
BstSFI CTRYAG 1 cut(s) 243
Cfr13I GGNCC 1 cut(s) 273
CviAII CATG 1 cut(s) 297
CviJI RGCY 6 cut(s) 65, 141, 169, 192, 222, 279
CviKI_1 RGCY 6 cut(s) 65, 141, 169, 192, 222, 279
DdeI CTNAG 3 cut(s) 142, 170, 193
DriI GACNNNNNGTC 1 cut(s) 116
Eam1104I CTCTTC 5 cut(s) 40, 142, 181, 193, 211
Eam1105I GACNNNNNGTC 1 cut(s) 116
EarI CTCTTC 5 cut(s) 40, 142, 181, 193, 211
Eco47I GGWCC 1 cut(s) 273
FaeI CATG 1 cut(s) 300
FaiI YATR 5 cut(s) 35, 135, 206, 245, 298
FaqI GGGAC 1 cut(s) 277
FatI CATG 1 cut(s) 296
Hin1II CATG 1 cut(s) 300
HinfI GANTC 1 cut(s) 117
Hpy166II GTNNAC 2 cut(s) 73, 155
Hpy188III TCNNGA 1 cut(s) 234
Hpy8I GTNNAC 2 cut(s) 73, 155
HpyAV CCTTC 2 cut(s) 14, 206
HpyCH4V TGCA 1 cut(s) 176
HpyF3I CTNAG 3 cut(s) 142, 170, 193
Hsp92II CATG 1 cut(s) 300
LpnPI CCDG 2 cut(s) 81, 289
MaeIII GTNAC 1 cut(s) 94
MboII GAAGA 7 cut(s) 57, 120, 159, 198, 210, 222, 228
MluCI AATT 2 cut(s) 79, 177
MlyI GAGTC 1 cut(s) 126
NlaIII CATG 1 cut(s) 300
NmuCI GTSAC 1 cut(s) 94
PleI GAGTC 1 cut(s) 125
PpsI GAGTC 1 cut(s) 125
PspPI GGNCC 1 cut(s) 273
Sau96I GGNCC 1 cut(s) 273
SchI GAGTC 1 cut(s) 126
SetI ASST 7 cut(s) 13, 52, 106, 154, 171, 250, 281
SfcI CTRYAG 1 cut(s) 243
SgeI CNNG 9 cut(s) 18, 74, 80, 98, 111, 125, 246, 279, 288
SinI GGWCC 1 cut(s) 273
SmlI CTYRAG 1 cut(s) 60
SmoI CTYRAG 1 cut(s) 60
Sse9I AATT 2 cut(s) 79, 177
TasI AATT 2 cut(s) 79, 177
TseFI GTSAC 1 cut(s) 94
Tsp45I GTSAC 1 cut(s) 94
VpaK11BI GGWCC 1 cut(s) 273
XapI RAATTY 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.