Prupe.1G504700_v2.0.a1

RNA recognition motif 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Forward (+)
41714589 .. 41716172
1584 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G504700.1_v2.0.a1.CDS.4

Sequence Viewer

Length: 870 bp
ATGCCTCTGAACCCTTATGCACCGCTATACCAAACCAGACAGAACTACTATTATTATACCTACAATCCTGTTTGGCTGGTACCCAGTGTTCATTTTGAGCCACTGCCAGTTTCTTCCTTGGTTCCTTGTGAGCCAGTGCCAATTTCTTCCTTGGTTCCTTGTGAGCCACAGCCAGCTGGCCCTTCTTCTTCTACAAATCTCCATTTTCCAAGGTCATCAGGTCCAGCTTTAAGAGGGAAAAGGTTGCAGCATAACAAGTATAAGGGCAAAAATGGGAGGGCTTGCGGACCAAGGAAGAAGCTTGATCTTGATAGTGGACGTGGAAAATGTGTGCCGAAAAACAAACAGAAGCTGCAAGCAGAAGAGAAGAATATGGAGGCTTCGAGTTCAGAGCACAAAAATGGCGGTCCTGTTATTCCTTTTCCTCCAACCTTTGACCAGTCTACAACCACTGTCATGGTCAAGAACATCCCTTATCAGTTTGGGAGGAATACTTTACTGGAAATACTGAGCTGGCATTGTTTTGAAGTGAACCGAGGCCTCCACTCTGATCCAAACAAGTCCAAGTTCGATTTTGTTTATCTACCCATAGATTTCGAGAAAATCTGGAAGAAGAAGACTATTTCAAATCTGGGTTACGCATTTGTGAATTTTACAACTCCAGCTGCAGCTCACAGATTTTGGGTGCATTTTCAAAACCGGGAGTTGAGAGAAAACAATTCCAAAAAGACTTGTGATGTTAAAAGCGCCAAATTCCAGGGCAAGGCAGCTCTTTTGGAAAAGTTCAAGAACAAGATGTTTTGGTGTGAATCTGCAGAGTGCTTGCCCGTGGCTGTGGAACCTGCATGCGACGGTTCCAATTGGTATCAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_2

Protein Analysis

290

Amino Acids

33.01

Weight (kDa)

9.38

Isoelectric Point (pI)

58.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 850
Acc65I GGTACC 1 cut(s) 79
AccB1I GGYRCC 1 cut(s) 79
AccI GTMKAC 1 cut(s) 443
AciI CCGC 3 cut(s) 23, 285, 405
AclWI GGATC 1 cut(s) 545
AcsI RAATTY 2 cut(s) 649, 752
AfaI GTAC 1 cut(s) 81
AfiI CCNNNNNNNGG 1 cut(s) 763
AgsI TTSAA 4 cut(s) 527, 627, 695, 787
AjiI CACGTC 1 cut(s) 320
AjnI CCWGG 1 cut(s) 756
AluBI AGCT 8 cut(s) 176, 227, 301, 352, 513, 665, 671, 770
AluI AGCT 8 cut(s) 176, 227, 301, 352, 513, 665, 671, 770
Alw21I GWGCWC 1 cut(s) 396
AlwI GGATC 1 cut(s) 545
AlwNI CAGNNNCTG 1 cut(s) 352
AoxI GGCC 2 cut(s) 178, 538
ApeKI GCWGC 5 cut(s) 247, 352, 665, 668, 767
ApoI RAATTY 2 cut(s) 649, 752
Asp718I GGTACC 1 cut(s) 79
AspLEI GCGC 1 cut(s) 749
AspS9I GGNCC 4 cut(s) 179, 221, 287, 407
AsuC2I CCSGG 1 cut(s) 701
AvaII GGWCC 3 cut(s) 221, 287, 407
BanI GGYRCC 1 cut(s) 79
BbsI GAAGAC 1 cut(s) 623
Bbv12I GWGCWC 1 cut(s) 396
BbvI GCAGC 5 cut(s) 259, 339, 652, 680, 779
BciT130I CCWGG 1 cut(s) 758
BcnI CCSGG 1 cut(s) 701
BfmI CTRYAG 2 cut(s) 666, 813
BfoI RGCGCY 1 cut(s) 750
BfuAI ACCTGC 1 cut(s) 850
BisI GCNGC 5 cut(s) 248, 353, 666, 669, 768
BlsI GCNGC 5 cut(s) 249, 354, 667, 670, 769
Bme1390I CCNGG 2 cut(s) 701, 758
Bme18I GGWCC 3 cut(s) 221, 287, 407
BmgBI CACGTC 1 cut(s) 320
BmgT120I GGNCC 4 cut(s) 179, 221, 287, 407
BmiI GGNNCC 5 cut(s) 81, 123, 156, 840, 856
BmrFI CCNGG 2 cut(s) 701, 758
BmrI ACTGGG 1 cut(s) 78
BmuI ACTGGG 1 cut(s) 78
BpiI GAAGAC 1 cut(s) 623
BpmI CTGGAG 1 cut(s) 645
BpuMI CCSGG 1 cut(s) 701
BsaJI CCNNGG 7 cut(s) 117, 150, 209, 290, 535, 757, 828
Bsc4I CCNNNNNNNGG 1 cut(s) 763
Bse1I ACTGG 5 cut(s) 84, 107, 134, 439, 504
BseBI CCWGG 1 cut(s) 758
BseDI CCNNGG 7 cut(s) 117, 150, 209, 290, 535, 757, 828
BseGI GGATG 1 cut(s) 468
BseLI CCNNNNNNNGG 1 cut(s) 763
BseMII CTCAG 1 cut(s) 500
BseNI ACTGG 5 cut(s) 84, 107, 134, 439, 504
BseXI GCAGC 5 cut(s) 259, 339, 652, 680, 779
BshFI GGCC 2 cut(s) 180, 540
BshNI GGYRCC 1 cut(s) 79
BsiHKAI GWGCWC 1 cut(s) 396
BsiSI CCGG 1 cut(s) 700
BslI CCNNNNNNNGG 1 cut(s) 763
BsnI GGCC 2 cut(s) 180, 540
Bsp1286I GDGCHC 1 cut(s) 396
Bsp143I GATC 2 cut(s) 304, 550
BspACI CCGC 3 cut(s) 23, 285, 405
BspANI GGCC 2 cut(s) 180, 540
BspCNI CTCAG 1 cut(s) 501
BspLI GGNNCC 5 cut(s) 81, 123, 156, 840, 856
BspMAI CTGCAG 2 cut(s) 670, 817
BspMI ACCTGC 1 cut(s) 850
BspPI GGATC 1 cut(s) 545
BspT107I GGYRCC 1 cut(s) 79
BsrI ACTGG 5 cut(s) 84, 107, 134, 439, 504
BssECI CCNNGG 7 cut(s) 117, 150, 209, 290, 535, 757, 828
BssMI GATC 2 cut(s) 304, 550
BssT1I CCWWGG 4 cut(s) 117, 150, 209, 290
Bst2UI CCWGG 1 cut(s) 758
Bst4CI ACNGT 2 cut(s) 454, 854
Bst6I CTCTTC 1 cut(s) 357
BstC8I GCNNGC 7 cut(s) 174, 178, 283, 357, 515, 824, 847
BstDEI CTNAG 1 cut(s) 509
BstDSI CCRYGG 1 cut(s) 828
BstF5I GGATG 1 cut(s) 468
BstH2I RGCGCY 1 cut(s) 750
BstHHI GCGC 1 cut(s) 749
BstKTI GATC 2 cut(s) 307, 553
BstMBI GATC 2 cut(s) 304, 550
BstNI CCWGG 1 cut(s) 758
BstNSI RCATGY 1 cut(s) 849
BstSCI CCNGG 2 cut(s) 699, 756
BstSFI CTRYAG 2 cut(s) 666, 813
BstV1I GCAGC 5 cut(s) 259, 339, 652, 680, 779
BstV2I GAAGAC 1 cut(s) 623
BstXI CCANNNNNNTGG 1 cut(s) 457
BsuRI GGCC 2 cut(s) 180, 540
BtgI CCRYGG 1 cut(s) 828
BtrI CACGTC 1 cut(s) 320
BtsCI GGATG 1 cut(s) 468
BtsI GCAGTG 1 cut(s) 101
BtsIMutI CAGTG 4 cut(s) 91, 101, 141, 450
BveI ACCTGC 1 cut(s) 850
Cac8I GCNNGC 7 cut(s) 174, 178, 283, 357, 515, 824, 847
CaiI CAGNNNCTG 1 cut(s) 352
CfoI GCGC 1 cut(s) 749
Cfr13I GGNCC 4 cut(s) 179, 221, 287, 407
Csp6I GTAC 1 cut(s) 80
CviAII CATG 2 cut(s) 457, 846
CviQI GTAC 1 cut(s) 80
DdeI CTNAG 1 cut(s) 509
DpnI GATC 2 cut(s) 306, 552
DpnII GATC 2 cut(s) 304, 550
Eam1104I CTCTTC 1 cut(s) 357
EarI CTCTTC 1 cut(s) 357
Eco130I CCWWGG 4 cut(s) 117, 150, 209, 290
Eco147I AGGCCT 1 cut(s) 540
Eco47I GGWCC 3 cut(s) 221, 287, 407
EcoRII CCWGG 1 cut(s) 756
EcoT14I CCWWGG 4 cut(s) 117, 150, 209, 290
ErhI CCWWGG 4 cut(s) 117, 150, 209, 290
FaeI CATG 2 cut(s) 460, 849
FaiI YATR 9 cut(s) 18, 28, 57, 252, 261, 374, 458, 590, 847
FatI CATG 2 cut(s) 456, 845
FblI GTMKAC 1 cut(s) 443
Fnu4HI GCNGC 5 cut(s) 248, 353, 666, 669, 768
FokI GGATG 1 cut(s) 455
Fsp4HI GCNGC 5 cut(s) 248, 353, 666, 669, 768
GlaI GCGC 1 cut(s) 748
GluI GCNGC 5 cut(s) 248, 353, 666, 669, 768
GsuI CTGGAG 1 cut(s) 645
HaeII RGCGCY 1 cut(s) 750
HaeIII GGCC 2 cut(s) 180, 540
HapII CCGG 1 cut(s) 700
HhaI GCGC 1 cut(s) 749
Hin1II CATG 2 cut(s) 460, 849
Hin6I GCGC 1 cut(s) 747
HinP1I GCGC 1 cut(s) 747
HindIII AAGCTT 1 cut(s) 299
HinfI GANTC 1 cut(s) 809
HpaII CCGG 1 cut(s) 700
Hpy166II GTNNAC 3 cut(s) 317, 444, 532
Hpy188I TCNGA 3 cut(s) 9, 391, 550
Hpy188III TCNNGA 5 cut(s) 308, 463, 598, 607, 787
Hpy8I GTNNAC 3 cut(s) 317, 444, 532
Hpy99I CGWCG 1 cut(s) 854
HpyAV CCTTC 1 cut(s) 192
HpyCH4III ACNGT 2 cut(s) 454, 854
HpyCH4IV ACGT 1 cut(s) 319
HpyCH4V TGCA 7 cut(s) 20, 247, 355, 668, 688, 815, 845
HpyF3I CTNAG 1 cut(s) 509
HpySE526I ACGT 1 cut(s) 319
Hsp92II CATG 2 cut(s) 460, 849
HspAI GCGC 1 cut(s) 747
KpnI GGTACC 1 cut(s) 83
Kzo9I GATC 2 cut(s) 304, 550
Lsp1109I GCAGC 5 cut(s) 259, 339, 652, 680, 779
MaeII ACGT 1 cut(s) 319
MaeIII GTNAC 1 cut(s) 635
MalI GATC 2 cut(s) 306, 552
MboI GATC 2 cut(s) 304, 550
MfeI CAATTG 1 cut(s) 859
MhlI GDGCHC 1 cut(s) 396
MluCI AATT 5 cut(s) 141, 649, 718, 752, 859
MmeI TCCRAC 1 cut(s) 452
MnlI CCTC 8 cut(s) 15, 227, 270, 370, 435, 480, 530, 551
MseI TTAA 2 cut(s) 230, 741
MslI CAYNNNNRTG 2 cut(s) 399, 455
MspA1I CMGCKG 2 cut(s) 176, 665
MspI CCGG 1 cut(s) 700
MspR9I CCNGG 2 cut(s) 701, 758
MunI CAATTG 1 cut(s) 859
MvaI CCWGG 1 cut(s) 758
NciI CCSGG 1 cut(s) 701
NdeII GATC 2 cut(s) 304, 550
NlaIII CATG 2 cut(s) 460, 849
NlaIV GGNNCC 5 cut(s) 81, 123, 156, 840, 856
NspI RCATGY 1 cut(s) 849
PaeI GCATGC 1 cut(s) 849
PceI AGGCCT 1 cut(s) 540
PfeI GAWTC 1 cut(s) 809
PkrI GCNGC 5 cut(s) 249, 354, 667, 670, 769
Psp6I CCWGG 1 cut(s) 756
PspGI CCWGG 1 cut(s) 756
PspN4I GGNNCC 5 cut(s) 81, 123, 156, 840, 856
PspPI GGNCC 4 cut(s) 179, 221, 287, 407
PsrI GAACNNNNNNTAC 2 cut(s) 72, 104
PstI CTGCAG 2 cut(s) 670, 817
PstNI CAGNNNCTG 1 cut(s) 352
PvuII CAGCTG 2 cut(s) 176, 665
RsaI GTAC 1 cut(s) 81
RsaNI GTAC 1 cut(s) 80
RseI CAYNNNNRTG 2 cut(s) 399, 455
SaqAI TTAA 2 cut(s) 230, 741
SatI GCNGC 5 cut(s) 248, 353, 666, 669, 768
Sau3AI GATC 2 cut(s) 304, 550
Sau96I GGNCC 4 cut(s) 179, 221, 287, 407
ScrFI CCNGG 2 cut(s) 701, 758
SduI GDGCHC 1 cut(s) 396
SfcI CTRYAG 2 cut(s) 666, 813
SinI GGWCC 3 cut(s) 221, 287, 407
SmiMI CAYNNNNRTG 2 cut(s) 399, 455
SphI GCATGC 1 cut(s) 849
Sse9I AATT 5 cut(s) 141, 649, 718, 752, 859
SseBI AGGCCT 1 cut(s) 540
SsiI CCGC 3 cut(s) 23, 285, 405
StuI AGGCCT 1 cut(s) 540
StyD4I CCNGG 2 cut(s) 699, 756
StyI CCWWGG 4 cut(s) 117, 150, 209, 290
TaaI ACNGT 2 cut(s) 454, 854
TaiI ACGT 1 cut(s) 322
TaqI TCGA 3 cut(s) 383, 570, 597
TasI AATT 5 cut(s) 141, 649, 718, 752, 859
TfiI GAWTC 1 cut(s) 809
Tru1I TTAA 2 cut(s) 230, 741
Tru9I TTAA 2 cut(s) 230, 741
TscAI CASTG 4 cut(s) 91, 108, 141, 457
TseI GCWGC 5 cut(s) 247, 352, 665, 668, 767
TspDTI ATGAA 1 cut(s) 80
TspRI CASTG 4 cut(s) 91, 108, 141, 457
VpaK11BI GGWCC 3 cut(s) 221, 287, 407
XapI RAATTY 2 cut(s) 649, 752
XceI RCATGY 1 cut(s) 849
XmiI GTMKAC 1 cut(s) 443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.