Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

42040130 .. 42044506

Gene Structure 4377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G510600.1_v2.0.a1.CDS.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGTATATGTACAGAAGTTGTGAACAACACAGAATGTTGACTGACTTTGAAGGTGCTACAAGAAGAAGCGAAGTAGGGTTCCGCATTTGGACTAGCAAAGAGTTCCACCAGTACCAGGTTGTTGGGAGGAAGCTCCCTACAGCATCTGATGAGCACCCCAAGACTTACCGAATGAAGCTTTGGGCCACCAATGAGGTATTTCCTGAGGAAGCTGAAGAAGGTCAAGAAGAGCAATGGCTAAGTGCTTGCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18A

Protein Analysis

85

Amino Acids

10.12

Weight (kDa)

5.77

Isoelectric Point (pI)

64.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	82
AcuI	CTGAAG	1 cut(s)	234
AfaI	GTAC	2 cut(s)	11, 113
AfiI	CCNNNNNNNGG	1 cut(s)	115
AgsI	TTSAA	1 cut(s)	50
AjnI	CCWGG	1 cut(s)	114
AjuI	GAANNNNNNNTTGG	2 cut(s)	163, 195
AluBI	AGCT	3 cut(s)	133, 178, 212
AluI	AGCT	3 cut(s)	133, 178, 212
Alw21I	GWGCWC	1 cut(s)	156
AlwNI	CAGNNNCTG	1 cut(s)	146
AoxI	GGCC	1 cut(s)	183
AspS9I	GGNCC	1 cut(s)	183
AxyI	CCTNAGG	1 cut(s)	204
Bbv12I	GWGCWC	1 cut(s)	156
BciT130I	CCWGG	1 cut(s)	116
BfaI	CTAG	1 cut(s)	93
BfmI	CTRYAG	1 cut(s)	138
Bme1390I	CCNGG	1 cut(s)	116
BmgT120I	GGNCC	1 cut(s)	183
BmiI	GGNNCC	1 cut(s)	80
BmrFI	CCNGG	1 cut(s)	116
BmsI	GCATC	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse1I	ACTGG	1 cut(s)	109
Bse21I	CCTNAGG	1 cut(s)	204
Bse3DI	GCAATG	1 cut(s)	239
BseBI	CCWGG	1 cut(s)	116
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMI	GCAATG	1 cut(s)	239
BseMII	CTCAG	1 cut(s)	195
BseNI	ACTGG	1 cut(s)	109
BshFI	GGCC	1 cut(s)	185
BsiHKAI	GWGCWC	1 cut(s)	156
BslI	CCNNNNNNNGG	1 cut(s)	115
BsnI	GGCC	1 cut(s)	185
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp1407I	TGTACA	1 cut(s)	9
BspACI	CCGC	1 cut(s)	82
BspANI	GGCC	1 cut(s)	185
BspCNI	CTCAG	1 cut(s)	196
BspLI	GGNNCC	1 cut(s)	80
BspQI	GCTCTTC	1 cut(s)	222
BsrDI	GCAATG	1 cut(s)	239
BsrGI	TGTACA	1 cut(s)	9
BsrI	ACTGG	1 cut(s)	109
Bst2UI	CCWGG	1 cut(s)	116
Bst6I	CTCTTC	1 cut(s)	222
BstAUI	TGTACA	1 cut(s)	9
BstC8I	GCNNGC	1 cut(s)	247
BstDEI	CTNAG	2 cut(s)	204, 239
BstNI	CCWGG	1 cut(s)	116
BstSCI	CCNGG	1 cut(s)	114
BstSFI	CTRYAG	1 cut(s)	138
BstXI	CCANNNNNNTGG	1 cut(s)	122
Bsu36I	CCTNAGG	1 cut(s)	204
BsuRI	GGCC	1 cut(s)	185
Cac8I	GCNNGC	1 cut(s)	247
CaiI	CAGNNNCTG	1 cut(s)	146
Cfr13I	GGNCC	1 cut(s)	183
CsiI	ACCWGGT	1 cut(s)	114
Csp6I	GTAC	2 cut(s)	10, 112
CviJI	RGCY	5 cut(s)	133, 178, 185, 212, 238
CviKI_1	RGCY	5 cut(s)	133, 178, 185, 212, 238
CviQI	GTAC	2 cut(s)	10, 112
DdeI	CTNAG	2 cut(s)	204, 239
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
Eco57I	CTGAAG	1 cut(s)	234
Eco81I	CCTNAGG	1 cut(s)	204
EcoRII	CCWGG	1 cut(s)	114
FaiI	YATR	2 cut(s)	6, 8
FspBI	CTAG	1 cut(s)	93
HaeIII	GGCC	1 cut(s)	185
HincII	GTYRAC	1 cut(s)	39
HindII	GTYRAC	1 cut(s)	39
HindIII	AAGCTT	1 cut(s)	176
Hpy166II	GTNNAC	2 cut(s)	23, 39
Hpy188I	TCNGA	1 cut(s)	148
Hpy188III	TCNNGA	2 cut(s)	203, 224
Hpy8I	GTNNAC	2 cut(s)	23, 39
HpyAV	CCTTC	2 cut(s)	44, 212
HpyF3I	CTNAG	2 cut(s)	204, 239
LguI	GCTCTTC	1 cut(s)	222
LmnI	GCTCC	1 cut(s)	138
LpnPI	CCDG	4 cut(s)	101, 122, 128, 216
LweI	GCATC	1 cut(s)	152
MabI	ACCWGGT	1 cut(s)	114
MaeI	CTAG	1 cut(s)	93
MboII	GAAGA	3 cut(s)	75, 227, 239
MhlI	GDGCHC	1 cut(s)	156
MnlI	CCTC	3 cut(s)	120, 187, 199
MseI	TTAA	1 cut(s)	253
MspR9I	CCNGG	1 cut(s)	116
MvaI	CCWGG	1 cut(s)	116
NlaIV	GGNNCC	1 cut(s)	80
PciSI	GCTCTTC	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	114
PspGI	CCWGG	1 cut(s)	114
PspN4I	GGNNCC	1 cut(s)	80
PspPI	GGNCC	1 cut(s)	183
PstNI	CAGNNNCTG	1 cut(s)	146
RsaI	GTAC	2 cut(s)	11, 113
RsaNI	GTAC	2 cut(s)	10, 112
SapI	GCTCTTC	1 cut(s)	222
SaqAI	TTAA	1 cut(s)	253
Sau96I	GGNCC	1 cut(s)	183
ScrFI	CCNGG	1 cut(s)	116
SduI	GDGCHC	1 cut(s)	156
SetI	ASST	7 cut(s)	55, 120, 135, 180, 198, 214, 223
SexAI	ACCWGGT	1 cut(s)	114
SfaNI	GCATC	1 cut(s)	152
SfcI	CTRYAG	1 cut(s)	138
SgeI	CNNG	8 cut(s)	72, 105, 121, 127, 128, 172, 215, 236
SsiI	CCGC	1 cut(s)	82
SspMI	CTAG	1 cut(s)	93
StyD4I	CCNGG	1 cut(s)	114
TatI	WGTACW	1 cut(s)	9
Tru1I	TTAA	1 cut(s)	253
Tru9I	TTAA	1 cut(s)	253
TspDTI	ATGAA	1 cut(s)	188
XspI	CTAG	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.