Prupe.1G511500_v2.0.a1

1,4-alpha-glucan branching enzyme activity

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Forward (+)
42106801 .. 42107868
1068 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G511500.1_v2.0.a1.CDS.3

Sequence Viewer

Length: 579 bp
ATGGGTGGTCAACAGAAAAACCCTGACCATATGCAGATGATACCTGATGTTGTAGCTGATATAAGGTCAAGGCCTTCTGTGCTATCTAACATAGCTGATCCTCAGAATCACAGCTCTGGGCTCTCAAGAGCTCCTATGCCTTTTAGTTTTCTTGGTGCTTTCATCTTCATGCTCGTACTGAATTCTTTTTGTAGGTTAGCTCCTGTCCAACTTGATGACATACTGAATCAATCTACTATTCCAAGTGATAGCAGTTCTCAGAGGAGTGTTCAATTCCGAAACTCCCCAACTGAACAAGTAAGAGTCTTCCTCTCCTCACTCGATGATTTTCGAAAGTTCAAAGTGATATATATAGAACTCTACATTTGCTTAACTGCGGGCAAGAGTTTCAGAACTGACATTGTACTATCACTGATGAAAACATCTTTTACTGATCGGATCAAATGCAGAGGAATTCAGCAGCTTCTAGTCGTACAGAAGTCAACAGGAGTACTTTTGAATCTCAAGAAAAAGAAATGGATATGTTGTCTAACCTTTTCTCTCCTTCTAATGCAAGGTCTACGAAATTTTATTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

193

Amino Acids

21.74

Weight (kDa)

9.63

Isoelectric Point (pI)

44.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 559
AciI CCGC 1 cut(s) 377
AclWI GGATC 2 cut(s) 92, 446
AcsI RAATTY 3 cut(s) 181, 453, 565
AfaI GTAC 4 cut(s) 177, 405, 474, 492
AgsI TTSAA 4 cut(s) 272, 340, 499, 575
AluBI AGCT 6 cut(s) 56, 95, 114, 131, 200, 463
AluI AGCT 6 cut(s) 56, 95, 114, 131, 200, 463
Alw21I GWGCWC 1 cut(s) 133
AlwI GGATC 2 cut(s) 92, 446
AoxI GGCC 1 cut(s) 71
ApeKI GCWGC 1 cut(s) 460
ApoI RAATTY 3 cut(s) 181, 453, 565
AsuII TTCGAA 1 cut(s) 331
BanII GRGCYC 2 cut(s) 123, 133
BbsI GAAGAC 1 cut(s) 298
Bbv12I GWGCWC 1 cut(s) 133
BbvI GCAGC 1 cut(s) 472
BfaI CTAG 1 cut(s) 467
BisI GCNGC 1 cut(s) 461
BlsI GCNGC 1 cut(s) 462
BmcAI AGTACT 1 cut(s) 492
BpiI GAAGAC 1 cut(s) 298
BplI GAGNNNNNCTC 2 cut(s) 294, 326
Bpu14I TTCGAA 1 cut(s) 331
BpuEI CTTGAG 2 cut(s) 109, 488
BseMII CTCAG 2 cut(s) 116, 272
BseRI GAGGAG 2 cut(s) 277, 304
BseXI GCAGC 1 cut(s) 472
BshFI GGCC 1 cut(s) 73
BsiHKAI GWGCWC 1 cut(s) 133
BsnI GGCC 1 cut(s) 73
Bsp119I TTCGAA 1 cut(s) 331
Bsp1286I GDGCHC 2 cut(s) 123, 133
Bsp143I GATC 3 cut(s) 97, 433, 438
BspACI CCGC 1 cut(s) 377
BspANI GGCC 1 cut(s) 73
BspCNI CTCAG 2 cut(s) 115, 271
BspPI GGATC 2 cut(s) 92, 446
BspT104I TTCGAA 1 cut(s) 331
BssMI GATC 3 cut(s) 97, 433, 438
BstBI TTCGAA 1 cut(s) 331
BstC8I GCNNGC 1 cut(s) 379
BstDEI CTNAG 2 cut(s) 102, 258
BstKTI GATC 3 cut(s) 100, 436, 441
BstMBI GATC 3 cut(s) 97, 433, 438
BstMWI GCNNNNNNNGC 1 cut(s) 79
BstV1I GCAGC 1 cut(s) 472
BstV2I GAAGAC 1 cut(s) 298
BsuRI GGCC 1 cut(s) 73
BtsIMutI CAGTG 1 cut(s) 410
Cac8I GCNNGC 1 cut(s) 379
Csp6I GTAC 4 cut(s) 176, 404, 473, 491
CviAII CATG 1 cut(s) 169
CviJI RGCY 8 cut(s) 56, 73, 95, 114, 121, 131, 200, 463
CviKI_1 RGCY 8 cut(s) 56, 73, 95, 114, 121, 131, 200, 463
CviQI GTAC 4 cut(s) 176, 404, 473, 491
DdeI CTNAG 2 cut(s) 102, 258
DpnI GATC 3 cut(s) 99, 435, 440
DpnII GATC 3 cut(s) 97, 433, 438
Ecl136II GAGCTC 1 cut(s) 131
Eco147I AGGCCT 1 cut(s) 73
Eco24I GRGCYC 2 cut(s) 123, 133
Eco53kI GAGCTC 1 cut(s) 131
EcoICRI GAGCTC 1 cut(s) 131
EcoRI GAATTC 2 cut(s) 181, 453
EcoT38I GRGCYC 2 cut(s) 123, 133
FaeI CATG 1 cut(s) 172
FatI CATG 1 cut(s) 168
FauI CCCGC 1 cut(s) 370
FauNDI CATATG 1 cut(s) 30
FblI GTMKAC 1 cut(s) 559
Fnu4HI GCNGC 1 cut(s) 461
FriOI GRGCYC 2 cut(s) 123, 133
Fsp4HI GCNGC 1 cut(s) 461
FspBI CTAG 1 cut(s) 467
GluI GCNGC 1 cut(s) 461
HaeIII GGCC 1 cut(s) 73
Hin1II CATG 1 cut(s) 172
HincII GTYRAC 2 cut(s) 11, 483
HindII GTYRAC 2 cut(s) 11, 483
HinfI GANTC 4 cut(s) 106, 226, 303, 499
Hpy166II GTNNAC 3 cut(s) 11, 483, 560
Hpy188I TCNGA 5 cut(s) 105, 261, 278, 392, 438
Hpy188III TCNNGA 2 cut(s) 126, 505
Hpy8I GTNNAC 3 cut(s) 11, 483, 560
HpyAV CCTTC 2 cut(s) 84, 554
HpyCH4V TGCA 3 cut(s) 34, 447, 553
HpyF10VI GCNNNNNNNGC 1 cut(s) 79
HpyF3I CTNAG 2 cut(s) 102, 258
Hsp92II CATG 1 cut(s) 172
Kzo9I GATC 3 cut(s) 97, 433, 438
LmnI GCTCC 2 cut(s) 136, 205
LpnPI CCDG 5 cut(s) 36, 57, 102, 216, 471
Lsp1109I GCAGC 1 cut(s) 472
MaeI CTAG 1 cut(s) 467
MalI GATC 3 cut(s) 99, 435, 440
MboI GATC 3 cut(s) 97, 433, 438
MboII GAAGA 2 cut(s) 157, 298
MhlI GDGCHC 2 cut(s) 123, 133
MluCI AATT 4 cut(s) 181, 272, 453, 565
MlyI GAGTC 1 cut(s) 312
MmeI TCCRAC 1 cut(s) 232
MnlI CCTC 5 cut(s) 111, 255, 320, 325, 443
MseI TTAA 1 cut(s) 371
MslI CAYNNNNRTG 1 cut(s) 167
MwoI GCNNNNNNNGC 1 cut(s) 79
NdeI CATATG 1 cut(s) 30
NdeII GATC 3 cut(s) 97, 433, 438
NlaIII CATG 1 cut(s) 172
NspV TTCGAA 1 cut(s) 331
PceI AGGCCT 1 cut(s) 73
PfeI GAWTC 3 cut(s) 106, 226, 499
PkrI GCNGC 1 cut(s) 462
PleI GAGTC 1 cut(s) 311
PpsI GAGTC 1 cut(s) 311
Psp124BI GAGCTC 1 cut(s) 133
RsaI GTAC 4 cut(s) 177, 405, 474, 492
RsaNI GTAC 4 cut(s) 176, 404, 473, 491
RseI CAYNNNNRTG 1 cut(s) 167
SacI GAGCTC 1 cut(s) 133
SaqAI TTAA 1 cut(s) 371
SatI GCNGC 1 cut(s) 461
Sau3AI GATC 3 cut(s) 97, 433, 438
ScaI AGTACT 1 cut(s) 492
SchI GAGTC 1 cut(s) 312
SduI GDGCHC 2 cut(s) 123, 133
SfuI TTCGAA 1 cut(s) 331
SmiMI CAYNNNNRTG 1 cut(s) 167
SmlI CTYRAG 2 cut(s) 124, 503
SmoI CTYRAG 2 cut(s) 124, 503
Sse9I AATT 4 cut(s) 181, 272, 453, 565
SseBI AGGCCT 1 cut(s) 73
SsiI CCGC 1 cut(s) 377
SspMI CTAG 1 cut(s) 467
SstI GAGCTC 1 cut(s) 133
StuI AGGCCT 1 cut(s) 73
TaqI TCGA 2 cut(s) 321, 331
TasI AATT 4 cut(s) 181, 272, 453, 565
TatI WGTACW 2 cut(s) 403, 490
TfiI GAWTC 3 cut(s) 106, 226, 499
Tru1I TTAA 1 cut(s) 371
Tru9I TTAA 1 cut(s) 371
TscAI CASTG 1 cut(s) 417
TseI GCWGC 1 cut(s) 460
TspDTI ATGAA 3 cut(s) 151, 157, 431
TspRI CASTG 1 cut(s) 417
XapI RAATTY 3 cut(s) 181, 453, 565
XmiI GTMKAC 1 cut(s) 559
XspI CTAG 1 cut(s) 467
ZrmI AGTACT 1 cut(s) 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.