Prupe.1G512700_v2.0.a1

TLC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Forward (+)
42199523 .. 42200251
729 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G512700.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 237 bp
ATGGCAGAATGGGTTCTTAATCTGGCCACCTACATTGTAGCAAGGGCTGGAGCTCACCTTCTCATCACCGCCAAGCTCATCTGGGATGCTCCCAAATTCGGAAAGGGCATTGAGCTGCCACTTGCATTGTTTGGGATGTTCGGAATGAACTTTCTGAATGCCTTTCTTGACATCGATCTCTTCCATGCTTTCAAGAGAGAGAGGAATCCTCAGAATACTAATAGTCATCATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00970 map00970
Pfam Domains
Protein Families
TRAM_LAG1_CLN8

Protein Analysis

79

Amino Acids

8.87

Weight (kDa)

6.91

Isoelectric Point (pI)

12.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 69
AcoI YGGCCR 1 cut(s) 24
AcsI RAATTY 1 cut(s) 95
AfiI CCNNNNNNNGG 1 cut(s) 98
AgsI TTSAA 1 cut(s) 193
AluBI AGCT 3 cut(s) 53, 76, 115
AluI AGCT 3 cut(s) 53, 76, 115
Alw21I GWGCWC 1 cut(s) 55
AoxI GGCC 1 cut(s) 24
ApeKI GCWGC 1 cut(s) 115
ApoI RAATTY 1 cut(s) 95
Asp700I GAANNNNTTC 1 cut(s) 12
AsuHPI GGTGA 2 cut(s) 47, 58
BalI TGGCCA 1 cut(s) 26
BanII GRGCYC 1 cut(s) 55
Bbv12I GWGCWC 1 cut(s) 55
BbvI GCAGC 1 cut(s) 102
BisI GCNGC 1 cut(s) 116
BlsI GCNGC 1 cut(s) 117
BmsI GCATC 1 cut(s) 76
BplI GAGNNNNNCTC 2 cut(s) 193, 225
BpmI CTGGAG 1 cut(s) 69
Bsa29I ATCGAT 1 cut(s) 174
Bsc4I CCNNNNNNNGG 1 cut(s) 98
BseCI ATCGAT 1 cut(s) 174
BseGI GGATG 2 cut(s) 91, 141
BseLI CCNNNNNNNGG 1 cut(s) 98
BseMII CTCAG 1 cut(s) 224
BseXI GCAGC 1 cut(s) 102
BshFI GGCC 1 cut(s) 26
BshVI ATCGAT 1 cut(s) 174
BsiHKAI GWGCWC 1 cut(s) 55
BslI CCNNNNNNNGG 1 cut(s) 98
BsmI GAATGC 1 cut(s) 163
BsnI GGCC 1 cut(s) 26
Bsp1286I GDGCHC 1 cut(s) 55
Bsp143I GATC 1 cut(s) 175
BspACI CCGC 1 cut(s) 69
BspANI GGCC 1 cut(s) 26
BspCNI CTCAG 1 cut(s) 223
BspDI ATCGAT 1 cut(s) 174
BspHI TCATGA 1 cut(s) 229
BssMI GATC 1 cut(s) 175
Bst6I CTCTTC 1 cut(s) 185
BstDEI CTNAG 1 cut(s) 210
BstF5I GGATG 2 cut(s) 91, 141
BstKTI GATC 1 cut(s) 178
BstMBI GATC 1 cut(s) 175
BstV1I GCAGC 1 cut(s) 102
Bsu15I ATCGAT 1 cut(s) 174
BsuRI GGCC 1 cut(s) 26
BsuTUI ATCGAT 1 cut(s) 174
BtsCI GGATG 2 cut(s) 91, 141
CciI TCATGA 1 cut(s) 229
ClaI ATCGAT 1 cut(s) 174
CspCI CAANNNNNGTGG 4 cut(s) 16, 51, 108, 143
CviAII CATG 2 cut(s) 185, 230
CviJI RGCY 5 cut(s) 26, 47, 53, 76, 115
CviKI_1 RGCY 5 cut(s) 26, 47, 53, 76, 115
DdeI CTNAG 1 cut(s) 210
DpnI GATC 1 cut(s) 177
DpnII GATC 1 cut(s) 175
EaeI YGGCCR 1 cut(s) 24
Eam1104I CTCTTC 1 cut(s) 185
EarI CTCTTC 1 cut(s) 185
Ecl136II GAGCTC 1 cut(s) 53
Eco24I GRGCYC 1 cut(s) 55
Eco53kI GAGCTC 1 cut(s) 53
EcoICRI GAGCTC 1 cut(s) 53
EcoT38I GRGCYC 1 cut(s) 55
FaeI CATG 2 cut(s) 188, 233
FaiI YATR 2 cut(s) 186, 231
FatI CATG 2 cut(s) 184, 229
Fnu4HI GCNGC 1 cut(s) 116
FokI GGATG 2 cut(s) 98, 148
FriOI GRGCYC 1 cut(s) 55
Fsp4HI GCNGC 1 cut(s) 116
GluI GCNGC 1 cut(s) 116
GsuI CTGGAG 1 cut(s) 69
HaeIII GGCC 1 cut(s) 26
Hin1II CATG 2 cut(s) 188, 233
HinfI GANTC 1 cut(s) 205
HphI GGTGA 2 cut(s) 47, 58
Hpy188I TCNGA 4 cut(s) 101, 143, 156, 213
Hpy188III TCNNGA 3 cut(s) 167, 193, 230
HpyAV CCTTC 1 cut(s) 68
HpyCH4V TGCA 1 cut(s) 125
HpyF3I CTNAG 1 cut(s) 210
Hsp92II CATG 2 cut(s) 188, 233
Kzo9I GATC 1 cut(s) 175
LmnI GCTCC 2 cut(s) 50, 94
LpnPI CCDG 3 cut(s) 8, 33, 67
Lsp1109I GCAGC 1 cut(s) 102
LweI GCATC 1 cut(s) 76
MalI GATC 1 cut(s) 177
MboI GATC 1 cut(s) 175
MboII GAAGA 1 cut(s) 172
MhlI GDGCHC 1 cut(s) 55
MlsI TGGCCA 1 cut(s) 26
MluCI AATT 1 cut(s) 95
MluNI TGGCCA 1 cut(s) 26
MnlI CCTC 2 cut(s) 195, 219
Mox20I TGGCCA 1 cut(s) 26
MroXI GAANNNNTTC 1 cut(s) 12
MscI TGGCCA 1 cut(s) 26
MseI TTAA 1 cut(s) 18
Msp20I TGGCCA 1 cut(s) 26
Mva1269I GAATGC 1 cut(s) 163
NdeII GATC 1 cut(s) 175
NlaIII CATG 2 cut(s) 188, 233
PagI TCATGA 1 cut(s) 229
PctI GAATGC 1 cut(s) 163
PdmI GAANNNNTTC 1 cut(s) 12
PfeI GAWTC 1 cut(s) 205
PkrI GCNGC 1 cut(s) 117
Psp124BI GAGCTC 1 cut(s) 55
SacI GAGCTC 1 cut(s) 55
SaqAI TTAA 1 cut(s) 18
SatI GCNGC 1 cut(s) 116
Sau3AI GATC 1 cut(s) 175
SduI GDGCHC 1 cut(s) 55
SetI ASST 5 cut(s) 32, 55, 60, 78, 117
SfaNI GCATC 1 cut(s) 76
SgeI CNNG 9 cut(s) 35, 54, 60, 85, 94, 134, 179, 197, 205
Sse9I AATT 1 cut(s) 95
SsiI CCGC 1 cut(s) 69
SstI GAGCTC 1 cut(s) 55
TaqI TCGA 1 cut(s) 174
TasI AATT 1 cut(s) 95
TfiI GAWTC 1 cut(s) 205
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TseI GCWGC 1 cut(s) 115
TspDTI ATGAA 1 cut(s) 161
XapI RAATTY 1 cut(s) 95
XmnI GAANNNNTTC 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.