Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

42360962 .. 42362408

Gene Structure 1447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G514800.1_v2.0.a1.CDS.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGCGACGCTTATTGGCAACCTCTTCTCCTCCCCGTTTCTTCCGAGTCAACTCGGTAACTCGAGGCCTCACAAGTTCAAGCTCAAGCCTTGCACTCCACCGATCCTAAAACGCTCCTTCACGGCAACTAACGTTAGAGCTTCTTCTTCCACCTCCTTCGTGGACACCACACCAACATTTGAGTTGGCTAAGGATTTCTTAAAGCCGGTCTACGGTGGAAGTATCATTGATACTAGCTGTGGCAGTGGGTTATTTTCTAGACTTTTCGCCAGGAGCGGATTGTTTTCTCTCGTTGTTGCTCTGGACTACTCAGAAAACATGTTGCAGCAGAACATAGTTTTGGTCAGAGCTGATATTTCTAGGCCTCCCTTTGCTACAAGTTCTGCTGATGCTGTGCATGCTGTATATTCTGTGAGTAATTTGGCAGCTATGGTTTTGAAGGTTGCTGATATTAGTCGAGTTTTGCGACCTGGTGGGAACATAAGTCATATAACGGGCAGCCAACAGTTTGTATCTGACGGTAAATTGGAAGATCTCTGCAATGTATGTGGTCTAGTCAGTTTTACAAGCGTTAGGAACAGGGCTTTTGTGATGATCTCTGCTACAAAACCCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010287 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

206

Amino Acids

22.03

Weight (kDa)

9.65

Isoelectric Point (pI)

44.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	276
AccI	GTMKAC	1 cut(s)	210
AciI	CCGC	1 cut(s)	276
AclI	AACGTT	1 cut(s)	132
AclWI	GGATC	1 cut(s)	97
AfiI	CCNNNNNNNGG	1 cut(s)	212
AflIII	ACRYGT	1 cut(s)	318
AgsI	TTSAA	2 cut(s)	79, 439
AjnI	CCWGG	2 cut(s)	269, 469
AjuI	GAANNNNNNNTTGG	2 cut(s)	323, 355
AluBI	AGCT	5 cut(s)	82, 140, 237, 350, 428
AluI	AGCT	5 cut(s)	82, 140, 237, 350, 428
AlwI	GGATC	1 cut(s)	97
Ama87I	CYCGRG	1 cut(s)	61
AoxI	GGCC	2 cut(s)	65, 362
ApeKI	GCWGC	3 cut(s)	325, 425, 498
AvaI	CYCGRG	1 cut(s)	61
BbvI	GCAGC	3 cut(s)	337, 437, 510
BceAI	ACGGC	1 cut(s)	138
BciT130I	CCWGG	2 cut(s)	271, 471
BfaI	CTAG	4 cut(s)	234, 258, 360, 554
BglII	AGATCT	1 cut(s)	532
BisI	GCNGC	3 cut(s)	326, 426, 499
BlsI	GCNGC	3 cut(s)	327, 427, 500
Bme1390I	CCNGG	2 cut(s)	271, 471
BmeT110I	CYCGRG	1 cut(s)	61
BmrFI	CCNGG	2 cut(s)	271, 471
BmsI	GCATC	1 cut(s)	379
Bpu10I	CCTNAGC	1 cut(s)	189
BpuEI	CTTGAG	1 cut(s)	68
BsaXI	ACNNNNNCTCC	2 cut(s)	11, 41
Bsc4I	CCNNNNNNNGG	1 cut(s)	212
Bse118I	RCCGGY	1 cut(s)	205
Bse3DI	GCAATG	1 cut(s)	547
BseBI	CCWGG	2 cut(s)	271, 471
BseLI	CCNNNNNNNGG	1 cut(s)	212
BseMI	GCAATG	1 cut(s)	547
BseMII	CTCAG	1 cut(s)	324
BseRI	GAGGAG	1 cut(s)	19
BseXI	GCAGC	3 cut(s)	337, 437, 510
BshFI	GGCC	2 cut(s)	67, 364
BsiHKCI	CYCGRG	1 cut(s)	61
BsiSI	CCGG	1 cut(s)	206
BslI	CCNNNNNNNGG	1 cut(s)	212
BsnI	GGCC	2 cut(s)	67, 364
BsoBI	CYCGRG	1 cut(s)	61
Bsp143I	GATC	3 cut(s)	102, 532, 594
BspACI	CCGC	1 cut(s)	276
BspANI	GGCC	2 cut(s)	67, 364
BspCNI	CTCAG	1 cut(s)	323
BspPI	GGATC	1 cut(s)	97
BsrBI	CCGCTC	1 cut(s)	276
BsrDI	GCAATG	1 cut(s)	547
BsrFI	RCCGGY	1 cut(s)	205
BssAI	RCCGGY	1 cut(s)	205
BssMI	GATC	3 cut(s)	102, 532, 594
Bst2UI	CCWGG	2 cut(s)	271, 471
Bst4CI	ACNGT	3 cut(s)	215, 507, 521
Bst6I	CTCTTC	1 cut(s)	29
BstC8I	GCNNGC	1 cut(s)	399
BstDEI	CTNAG	2 cut(s)	189, 310
BstKTI	GATC	3 cut(s)	105, 535, 597
BstMBI	GATC	3 cut(s)	102, 532, 594
BstMWI	GCNNNNNNNGC	1 cut(s)	398
BstNI	CCWGG	2 cut(s)	271, 471
BstNSI	RCATGY	2 cut(s)	322, 401
BstSCI	CCNGG	2 cut(s)	269, 469
BstV1I	GCAGC	3 cut(s)	337, 437, 510
BstX2I	RGATCY	1 cut(s)	532
BstYI	RGATCY	1 cut(s)	532
BsuRI	GGCC	2 cut(s)	67, 364
BtsI	GCAGTG	1 cut(s)	250
BtsIMutI	CAGTG	1 cut(s)	250
Cac8I	GCNNGC	1 cut(s)	399
Cfr10I	RCCGGY	1 cut(s)	205
CseI	GACGC	1 cut(s)	16
CsiI	ACCWGGT	1 cut(s)	469
CspCI	CAANNNNNGTGG	2 cut(s)	529, 564
CviAII	CATG	2 cut(s)	319, 398
DdeI	CTNAG	2 cut(s)	189, 310
DpnI	GATC	3 cut(s)	104, 534, 596
DpnII	GATC	3 cut(s)	102, 532, 594
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
Eco147I	AGGCCT	2 cut(s)	67, 364
Eco88I	CYCGRG	1 cut(s)	61
EcoRII	CCWGG	2 cut(s)	269, 469
FaeI	CATG	2 cut(s)	322, 401
FaiI	YATR	9 cut(s)	320, 335, 399, 406, 431, 482, 489, 491, 547
FalI	AAGNNNNNCTT	2 cut(s)	182, 214
FatI	CATG	2 cut(s)	318, 397
FblI	GTMKAC	1 cut(s)	210
Fnu4HI	GCNGC	3 cut(s)	326, 426, 499
Fsp4HI	GCNGC	3 cut(s)	326, 426, 499
FspBI	CTAG	4 cut(s)	234, 258, 360, 554
GluI	GCNGC	3 cut(s)	326, 426, 499
HaeIII	GGCC	2 cut(s)	67, 364
HapII	CCGG	1 cut(s)	206
HgaI	GACGC	1 cut(s)	16
Hin1II	CATG	2 cut(s)	322, 401
HincII	GTYRAC	1 cut(s)	50
HindII	GTYRAC	1 cut(s)	50
HinfI	GANTC	1 cut(s)	46
HpaII	CCGG	1 cut(s)	206
Hpy166II	GTNNAC	3 cut(s)	50, 163, 211
Hpy188I	TCNGA	4 cut(s)	45, 313, 347, 517
Hpy188III	TCNNGA	2 cut(s)	258, 302
Hpy8I	GTNNAC	3 cut(s)	50, 163, 211
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	3 cut(s)	127, 166, 433
HpyCH4III	ACNGT	3 cut(s)	215, 507, 521
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	4 cut(s)	93, 325, 397, 540
HpyF10VI	GCNNNNNNNGC	1 cut(s)	398
HpyF3I	CTNAG	2 cut(s)	189, 310
HpySE526I	ACGT	1 cut(s)	132
Hsp92II	CATG	2 cut(s)	322, 401
Kzo9I	GATC	3 cut(s)	102, 532, 594
LmnI	GCTCC	2 cut(s)	119, 273
LpnPI	CCDG	7 cut(s)	219, 256, 283, 287, 456, 483, 565
Lsp1109I	GCAGC	3 cut(s)	337, 437, 510
LweI	GCATC	1 cut(s)	379
MabI	ACCWGGT	1 cut(s)	469
MaeI	CTAG	4 cut(s)	234, 258, 360, 554
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	1 cut(s)	56
MalI	GATC	3 cut(s)	104, 534, 596
MbiI	CCGCTC	1 cut(s)	276
MboI	GATC	3 cut(s)	102, 532, 594
MboII	GAAGA	5 cut(s)	16, 32, 135, 138, 542
MflI	RGATCY	1 cut(s)	532
MluCI	AATT	3 cut(s)	418, 524, 613
MlyI	GAGTC	1 cut(s)	55
MnlI	CCTC	6 cut(s)	32, 40, 57, 78, 163, 375
MseI	TTAA	2 cut(s)	200, 616
MspI	CCGG	1 cut(s)	206
MspR9I	CCNGG	2 cut(s)	271, 471
MvaI	CCWGG	2 cut(s)	271, 471
MwoI	GCNNNNNNNGC	1 cut(s)	398
NdeII	GATC	3 cut(s)	102, 532, 594
NlaIII	CATG	2 cut(s)	322, 401
NspI	RCATGY	2 cut(s)	322, 401
PaeI	GCATGC	1 cut(s)	401
PaeR7I	CTCGAG	1 cut(s)	61
PceI	AGGCCT	2 cut(s)	67, 364
PciI	ACATGT	1 cut(s)	318
PcsI	WCGNNNNNNNCGW	1 cut(s)	463
PkrI	GCNGC	3 cut(s)	327, 427, 500
PleI	GAGTC	1 cut(s)	54
PpsI	GAGTC	1 cut(s)	54
PscI	ACATGT	1 cut(s)	318
Psp1406I	AACGTT	1 cut(s)	132
Psp6I	CCWGG	2 cut(s)	269, 469
PspGI	CCWGG	2 cut(s)	269, 469
PspXI	VCTCGAGB	1 cut(s)	61
PsuI	RGATCY	1 cut(s)	532
SaqAI	TTAA	2 cut(s)	200, 616
SatI	GCNGC	3 cut(s)	326, 426, 499
Sau3AI	GATC	3 cut(s)	102, 532, 594
SchI	GAGTC	1 cut(s)	55
ScrFI	CCNGG	2 cut(s)	271, 471
SexAI	ACCWGGT	1 cut(s)	469
SfaNI	GCATC	1 cut(s)	379
Sfr274I	CTCGAG	1 cut(s)	61
SlaI	CTCGAG	1 cut(s)	61
SmlI	CTYRAG	2 cut(s)	61, 83
SmoI	CTYRAG	2 cut(s)	61, 83
SphI	GCATGC	1 cut(s)	401
Sse9I	AATT	3 cut(s)	418, 524, 613
SseBI	AGGCCT	2 cut(s)	67, 364
SsiI	CCGC	1 cut(s)	276
SspMI	CTAG	4 cut(s)	234, 258, 360, 554
StuI	AGGCCT	2 cut(s)	67, 364
StyD4I	CCNGG	2 cut(s)	269, 469
TaaI	ACNGT	3 cut(s)	215, 507, 521
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	2 cut(s)	62, 457
TasI	AATT	3 cut(s)	418, 524, 613
Tru1I	TTAA	2 cut(s)	200, 616
Tru9I	TTAA	2 cut(s)	200, 616
TscAI	CASTG	1 cut(s)	250
TseI	GCWGC	3 cut(s)	325, 425, 498
TspRI	CASTG	1 cut(s)	250
XbaI	TCTAGA	1 cut(s)	257
XceI	RCATGY	2 cut(s)	322, 401
XcmI	CCANNNNNNNNNTGG	1 cut(s)	157
XhoI	CTCGAG	1 cut(s)	61
XmiI	GTMKAC	1 cut(s)	210
XspI	CTAG	4 cut(s)	234, 258, 360, 554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.