Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0029145

Physical Location & Seq

Genomic Coordinates Reverse (-)

42852661 .. 42855150

Gene Structure 2490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G523300.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGAAAACTCAGACTCTGACGAGCCAGAGAAGAAGAGGCCTCATTTAAACTCACTTTCGCCCACCATGGCTCGTAGCTCCACCACTTCTCCGCCCAATAACCATGTTTGCATTGATCTGGTTTGTGGTGCAAAGGACAAGAGGCTCCGGGTTAAGGGACCCGTGAGAATGCCAACCAAGATTCTGCACATTACCACCAGGAAGTCCCCTTGTGGTGAAGGTATGTTCACTGTGAAATGTTCTTGCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002376 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006513 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009965 GO:0009987 GO:0010016 GO:0010154 GO:0010162 GO:0010228 GO:0010390 GO:0010431 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016574 GO:0019538 GO:0021700 GO:0022414 GO:0022611 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0033523 GO:0036211 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045087 GO:0046983 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048609 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051276 GO:0061458 GO:0070647 GO:0071695 GO:0071704 GO:0071840 GO:0099402 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

84

Amino Acids

9.16

Weight (kDa)

9.24

Isoelectric Point (pI)

68.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029145)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G523300_v2.0.a1 Prupe.1G523300_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	92
AfiI	CCNNNNNNNGG	1 cut(s)	154
AjnI	CCWGG	1 cut(s)	197
AluBI	AGCT	1 cut(s)	78
AluI	AGCT	1 cut(s)	78
AlwNI	CAGNNNCTG	1 cut(s)	17
AoxI	GGCC	1 cut(s)	38
AspS9I	GGNCC	1 cut(s)	158
AsuC2I	CCSGG	1 cut(s)	149
AsuHPI	GGTGA	1 cut(s)	227
AvaII	GGWCC	1 cut(s)	158
BciT130I	CCWGG	1 cut(s)	199
BcnI	CCSGG	1 cut(s)	149
Bme1390I	CCNGG	2 cut(s)	149, 199
Bme18I	GGWCC	1 cut(s)	158
BmgT120I	GGNCC	1 cut(s)	158
BmiI	GGNNCC	3 cut(s)	146, 159, 160
BmrFI	CCNGG	2 cut(s)	149, 199
BpuMI	CCSGG	1 cut(s)	149
BsaJI	CCNNGG	1 cut(s)	66
BsaXI	ACNNNNNCTCC	2 cut(s)	73, 103
Bsc4I	CCNNNNNNNGG	1 cut(s)	154
BseBI	CCWGG	1 cut(s)	199
BseDI	CCNNGG	1 cut(s)	66
BseLI	CCNNNNNNNGG	1 cut(s)	154
BseMII	CTCAG	1 cut(s)	24
BsgI	GTGCAG	1 cut(s)	170
BshFI	GGCC	1 cut(s)	40
BsiSI	CCGG	1 cut(s)	148
BslFI	GGGAC	2 cut(s)	171, 190
BslI	CCNNNNNNNGG	1 cut(s)	154
BsmFI	GGGAC	2 cut(s)	171, 190
BsmI	GAATGC	1 cut(s)	174
BsnI	GGCC	1 cut(s)	40
Bsp143I	GATC	1 cut(s)	115
Bsp19I	CCATGG	1 cut(s)	66
BspACI	CCGC	1 cut(s)	92
BspANI	GGCC	1 cut(s)	40
BspCNI	CTCAG	1 cut(s)	23
BspLI	GGNNCC	3 cut(s)	146, 159, 160
BssECI	CCNNGG	1 cut(s)	66
BssMI	GATC	1 cut(s)	115
BssT1I	CCWWGG	1 cut(s)	66
Bst2UI	CCWGG	1 cut(s)	199
Bst4CI	ACNGT	1 cut(s)	232
Bst6I	CTCTTC	1 cut(s)	29
BstDEI	CTNAG	1 cut(s)	10
BstDSI	CCRYGG	1 cut(s)	66
BstKTI	GATC	1 cut(s)	118
BstMBI	GATC	1 cut(s)	115
BstNI	CCWGG	1 cut(s)	199
BstSCI	CCNGG	2 cut(s)	147, 197
BsuRI	GGCC	1 cut(s)	40
BtgI	CCRYGG	1 cut(s)	66
BtsIMutI	CAGTG	1 cut(s)	228
CaiI	CAGNNNCTG	1 cut(s)	17
Cfr13I	GGNCC	1 cut(s)	158
CviAII	CATG	2 cut(s)	67, 104
CviJI	RGCY	5 cut(s)	25, 40, 71, 78, 145
CviKI_1	RGCY	5 cut(s)	25, 40, 71, 78, 145
DdeI	CTNAG	1 cut(s)	10
DpnI	GATC	1 cut(s)	117
DpnII	GATC	1 cut(s)	115
DraI	TTTAAA	1 cut(s)	48
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
EciI	GGCGGA	1 cut(s)	81
Eco130I	CCWWGG	1 cut(s)	66
Eco147I	AGGCCT	1 cut(s)	40
Eco47I	GGWCC	1 cut(s)	158
EcoO109I	RGGNCCY	1 cut(s)	158
EcoRII	CCWGG	1 cut(s)	197
EcoT14I	CCWWGG	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	66
FaeI	CATG	2 cut(s)	70, 107
FaiI	YATR	3 cut(s)	68, 105, 224
FaqI	GGGAC	2 cut(s)	171, 190
FatI	CATG	2 cut(s)	66, 103
HaeIII	GGCC	1 cut(s)	40
HapII	CCGG	1 cut(s)	148
Hin1II	CATG	2 cut(s)	70, 107
HinfI	GANTC	2 cut(s)	14, 181
HpaII	CCGG	1 cut(s)	148
HphI	GGTGA	1 cut(s)	227
Hpy166II	GTNNAC	1 cut(s)	228
Hpy188I	TCNGA	2 cut(s)	13, 19
Hpy8I	GTNNAC	1 cut(s)	228
HpyAV	CCTTC	1 cut(s)	212
HpyCH4III	ACNGT	1 cut(s)	232
HpyCH4V	TGCA	3 cut(s)	111, 131, 187
HpyF3I	CTNAG	1 cut(s)	10
Hsp92II	CATG	2 cut(s)	70, 107
KflI	GGGWCCC	1 cut(s)	158
Kzo9I	GATC	1 cut(s)	115
LmnI	GCTCC	2 cut(s)	83, 150
LpnPI	CCDG	5 cut(s)	39, 104, 161, 184, 211
MalI	GATC	1 cut(s)	117
MboI	GATC	1 cut(s)	115
MboII	GAAGA	2 cut(s)	43, 46
MlyI	GAGTC	1 cut(s)	8
MnlI	CCTC	3 cut(s)	30, 51, 135
MseI	TTAA	3 cut(s)	47, 153, 250
MspI	CCGG	1 cut(s)	148
MspR9I	CCNGG	2 cut(s)	149, 199
Mva1269I	GAATGC	1 cut(s)	174
MvaI	CCWGG	1 cut(s)	199
NciI	CCSGG	1 cut(s)	149
NcoI	CCATGG	1 cut(s)	66
NdeII	GATC	1 cut(s)	115
NlaIII	CATG	2 cut(s)	70, 107
NlaIV	GGNNCC	3 cut(s)	146, 159, 160
PceI	AGGCCT	1 cut(s)	40
PctI	GAATGC	1 cut(s)	174
PfeI	GAWTC	1 cut(s)	181
PleI	GAGTC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	8
PpuMI	RGGWCCY	1 cut(s)	158
Psp5II	RGGWCCY	1 cut(s)	158
Psp6I	CCWGG	1 cut(s)	197
PspGI	CCWGG	1 cut(s)	197
PspN4I	GGNNCC	3 cut(s)	146, 159, 160
PspPI	GGNCC	1 cut(s)	158
PspPPI	RGGWCCY	1 cut(s)	158
PstNI	CAGNNNCTG	1 cut(s)	17
SaqAI	TTAA	3 cut(s)	47, 153, 250
Sau3AI	GATC	1 cut(s)	115
Sau96I	GGNCC	1 cut(s)	158
SchI	GAGTC	1 cut(s)	8
ScrFI	CCNGG	2 cut(s)	149, 199
SetI	ASST	2 cut(s)	80, 223
SinI	GGWCC	1 cut(s)	158
SseBI	AGGCCT	1 cut(s)	40
SsiI	CCGC	1 cut(s)	92
StuI	AGGCCT	1 cut(s)	40
StyD4I	CCNGG	2 cut(s)	147, 197
StyI	CCWWGG	1 cut(s)	66
TaaI	ACNGT	1 cut(s)	232
TfiI	GAWTC	1 cut(s)	181
Tru1I	TTAA	3 cut(s)	47, 153, 250
Tru9I	TTAA	3 cut(s)	47, 153, 250
TscAI	CASTG	1 cut(s)	235
TspRI	CASTG	1 cut(s)	235
VpaK11BI	GGWCC	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.