Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

43813504 .. 43814227

Gene Structure 724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G536200.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCTAGCAGTTCCTCTTCCTCCTCGCTGCCTGTGCTCTCTCATCCCAATATCTCGACTCTGGTTTCTCATTCTGGGATTCCTGTAATTGACCTCTCAAAACCATACTCTAAACAGCTCATTGTCAGGGCTTGTGAGGAGTTTTGCTTCTTCAAGATCATCAACCATGGTGTTCCAATGGAATTCATTACCATGTTGGAATCTGAGGCCGCCAAATCCTTCTCCTTGCCACTTTCCGAGAAGGAAAAAGCAGGGCATGCTAATACATTAGGATATGGTAACAAGAACATTGGAAAAAATGGTGATGTTTGTTGGGTGGAGTACCTCCTTCTAAATGCCAATACAAAATCCAATGCACAGAGAACAACCGTGAAGAGTTTTGGTAAGCTATTCAAACAAGTCAGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008300 GO:0009056 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009987 GO:0010817 GO:0016042 GO:0016054 GO:0016101 GO:0016103 GO:0016115 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0042447 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0045487 GO:0045543 GO:0046395 GO:0050896 GO:0051213 GO:0052634 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

137

Amino Acids

14.86

Weight (kDa)

9.22

Isoelectric Point (pI)

35.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	210
AcsI	RAATTY	1 cut(s)	182
AfaI	GTAC	1 cut(s)	323
AgsI	TTSAA	2 cut(s)	154, 394
AluBI	AGCT	3 cut(s)	118, 388, 407
AluI	AGCT	3 cut(s)	118, 388, 407
Alw21I	GWGCWC	1 cut(s)	39
AoxI	GGCC	1 cut(s)	207
ApeKI	GCWGC	1 cut(s)	28
ApoI	RAATTY	1 cut(s)	182
AsuHPI	GGTGA	1 cut(s)	314
AsuNHI	GCTAGC	1 cut(s)	5
Bbv12I	GWGCWC	1 cut(s)	39
BbvI	GCAGC	1 cut(s)	15
BfaI	CTAG	1 cut(s)	6
BisI	GCNGC	2 cut(s)	29, 210
BlsI	GCNGC	2 cut(s)	30, 211
BmtI	GCTAGC	1 cut(s)	9
BsaJI	CCNNGG	1 cut(s)	166
BseDI	CCNNGG	1 cut(s)	166
BseGI	GGATG	1 cut(s)	43
BseMII	CTCAG	1 cut(s)	195
BseRI	GAGGAG	2 cut(s)	13, 152
BseXI	GCAGC	1 cut(s)	15
BshFI	GGCC	1 cut(s)	209
BsiHKAI	GWGCWC	1 cut(s)	39
BsnI	GGCC	1 cut(s)	209
Bsp1286I	GDGCHC	1 cut(s)	39
Bsp143I	GATC	1 cut(s)	156
Bsp19I	CCATGG	1 cut(s)	166
BspACI	CCGC	1 cut(s)	210
BspANI	GGCC	1 cut(s)	209
BspCNI	CTCAG	1 cut(s)	196
BspOI	GCTAGC	1 cut(s)	9
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	1 cut(s)	156
BssT1I	CCWWGG	1 cut(s)	166
Bst4CI	ACNGT	1 cut(s)	370
Bst6I	CTCTTC	2 cut(s)	22, 368
BstAPI	GCANNNNNTGC	1 cut(s)	257
BstC8I	GCNNGC	2 cut(s)	7, 258
BstDEI	CTNAG	1 cut(s)	204
BstDSI	CCRYGG	1 cut(s)	166
BstF5I	GGATG	1 cut(s)	43
BstKTI	GATC	1 cut(s)	159
BstMBI	GATC	1 cut(s)	156
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 257
BstNSI	RCATGY	1 cut(s)	260
BstV1I	GCAGC	1 cut(s)	15
BsuRI	GGCC	1 cut(s)	209
BtgI	CCRYGG	1 cut(s)	166
BtsCI	GGATG	1 cut(s)	43
Cac8I	GCNNGC	2 cut(s)	7, 258
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	3 cut(s)	167, 193, 257
CviJI	RGCY	6 cut(s)	5, 118, 131, 209, 388, 407
CviKI_1	RGCY	6 cut(s)	5, 118, 131, 209, 388, 407
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	1 cut(s)	158
DpnII	GATC	1 cut(s)	156
Eam1104I	CTCTTC	2 cut(s)	22, 368
EarI	CTCTTC	2 cut(s)	22, 368
Eco130I	CCWWGG	1 cut(s)	166
EcoRI	GAATTC	1 cut(s)	182
EcoT14I	CCWWGG	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	166
FaeI	CATG	3 cut(s)	170, 196, 260
FaiI	YATR	5 cut(s)	106, 168, 194, 258, 276
FatI	CATG	3 cut(s)	166, 192, 256
Fnu4HI	GCNGC	2 cut(s)	29, 210
FokI	GGATG	1 cut(s)	30
Fsp4HI	GCNGC	2 cut(s)	29, 210
FspBI	CTAG	1 cut(s)	6
GluI	GCNGC	2 cut(s)	29, 210
HaeIII	GGCC	1 cut(s)	209
Hin1II	CATG	3 cut(s)	170, 196, 260
HinfI	GANTC	3 cut(s)	58, 79, 200
HphI	GGTGA	1 cut(s)	314
Hpy188I	TCNGA	3 cut(s)	205, 238, 404
Hpy188III	TCNNGA	2 cut(s)	55, 154
HpyAV	CCTTC	3 cut(s)	229, 235, 338
HpyCH4III	ACNGT	1 cut(s)	370
HpyCH4V	TGCA	1 cut(s)	356
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 257
HpyF3I	CTNAG	1 cut(s)	204
Hsp92II	CATG	3 cut(s)	170, 196, 260
Kzo9I	GATC	1 cut(s)	156
LpnPI	CCDG	6 cut(s)	45, 47, 60, 96, 112, 237
Lsp1109I	GCAGC	1 cut(s)	15
MaeI	CTAG	1 cut(s)	6
MaeIII	GTNAC	1 cut(s)	278
MalI	GATC	1 cut(s)	158
MboI	GATC	1 cut(s)	156
MboII	GAAGA	3 cut(s)	9, 142, 385
MhlI	GDGCHC	1 cut(s)	39
MluCI	AATT	2 cut(s)	87, 182
MlyI	GAGTC	1 cut(s)	52
MmeI	TCCRAC	1 cut(s)	177
MnlI	CCTC	7 cut(s)	25, 31, 34, 104, 130, 199, 335
MslI	CAYNNNNRTG	1 cut(s)	191
MwoI	GCNNNNNNNGC	2 cut(s)	34, 257
NcoI	CCATGG	1 cut(s)	166
NdeII	GATC	1 cut(s)	156
NheI	GCTAGC	1 cut(s)	5
NlaIII	CATG	3 cut(s)	170, 196, 260
NspI	RCATGY	1 cut(s)	260
PaeI	GCATGC	1 cut(s)	260
PfeI	GAWTC	2 cut(s)	79, 200
PkrI	GCNGC	2 cut(s)	30, 211
PleI	GAGTC	1 cut(s)	52
PpsI	GAGTC	1 cut(s)	52
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
RseI	CAYNNNNRTG	1 cut(s)	191
SatI	GCNGC	2 cut(s)	29, 210
Sau3AI	GATC	1 cut(s)	156
SchI	GAGTC	1 cut(s)	52
SduI	GDGCHC	1 cut(s)	39
SetI	ASST	5 cut(s)	96, 120, 327, 390, 409
SmiMI	CAYNNNNRTG	1 cut(s)	191
SphI	GCATGC	1 cut(s)	260
Sse9I	AATT	2 cut(s)	87, 182
SsiI	CCGC	1 cut(s)	210
SspMI	CTAG	1 cut(s)	6
StyI	CCWWGG	1 cut(s)	166
TaaI	ACNGT	1 cut(s)	370
TaqI	TCGA	1 cut(s)	56
TasI	AATT	2 cut(s)	87, 182
TauI	GCSGC	1 cut(s)	212
TfiI	GAWTC	2 cut(s)	79, 200
TseI	GCWGC	1 cut(s)	28
TspDTI	ATGAA	1 cut(s)	175
XapI	RAATTY	1 cut(s)	182
XceI	RCATGY	1 cut(s)	260
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.