Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

43845724 .. 43848175

Gene Structure 2452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G536800.1_v2.0.a1.CDS.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1545 bp

ATGGCCAGTTGCGTTGCAGTACTAATTGTTGTTTGGGTGAGCATAGTGATTGCATGGGCATGGAGGGTGCTGAATTGGGTGTGGTTGAGGCCAAAAAAACTAGAAAGATGCTTGAAGGAGCAAGGCTTTACAGGCAATTCTTACAGGCTTTTGTTTGGAGACACCAAGGATAGCTCAATGATGCTGCGACAAGCACAATCCAAACCCATGAAACTTTCCACCTCCCATGATATAGCGCCACGGTATTTTAACCTTTTTTTAAACCAAAAAAATACAGGTAGGAATTCTTTTGTCTGGGTGGGCCCCATACCAAAGGTGAACATCTTGAATCCAGAAGATTTGAAAGAAATATTCAACAAACATGAAAATATTCAGAGGACAGTAGCAAACCCTATTATCGACTTGCTAGTACAGGGCCTTGGATCCACTGTAGATGAGAAATGGGCTAAACACAGGAAGATTATCAACCCAGCATTCCATTTAGAGAAGCTAAAGGGTATGTTACCAACATTTTACCACAGCTGTAGCGAGATGATTAACGAGTGGGAGAGGTTGGTGTCCAAAGAAGGTTCATGTGAGTTGGATGTGTGGCCATGTCTTCTAAATATGTCGGCCGATGTGATTTCTCGGGCTGCATTTGGAAGTAGCTATCAAGAGGGAAGAAAAATATTTCAGCTACTACAACAACAAACAAAAAATTATGCAGCAGCCATCCAAAGTGTTCACATTCCGTTTCTACCAACCAAGCATCACAAGAGGATGAAGGAAATCAATAAAGAAATAAGAGTGTTGCTCAGGGGTATTATAAATAAAAGAGAAGAGGCAATTAAGATGGGTGAAGCCAGTAATCATGACTTGTTAGGTATACTTTTGGAGTCCAACTTGAAGGAAATTCGAGAACATGGGAACAAGAGAAACACTGGAATGAGTGTTGAAGATGTAATTGAGGAGTGTAAGTTGTTTTACTTCGCTGGCCAAGAGACCACTTCTACGCTGCTTGTTTGGGCAATTGTTTTGCTAAGTCAAAACCAAAATTGGCAAACTCGTGCAAGAGAAGAGGTCTTGCAAGCCTTTGGAAGCAACCCACCAACCTTTGATGCCCTAAGCCAACTAAAAGTTGTGACCATGGTTTTACTTGAAGTTCTTCGATTATACCCGCCAGGTATTGAGCTTCCACGAACCCTTCGAAGGAAAACACAGCTTGGAAGGTTCTCATTACCGGCTGGAGTCGATGTCTCCTTACACATACTGCTTGTTCACCATAACGAAGAATTGTGGGGTGAGGATGCACATGAGTTCAAGCCAGAGAGGTTTTCAGATGGAGTTTCAAAGGCAACAAAGAACCAATTTGCATACTTTCCTTTTGGAGCCGGTCCAAGGATTTGCATTGGACAAAACTTTGCTATGCTGGAAGCAAAATTGGCCTTGTCATTGATTCTGCAACACTTTACCTTTGAACTCTCTCCCTCCTATGCTCATGCTCCTGCGTTACTAACCATCCTTCAACCTCAATATGGTGCTCATATCATTTTAAGTAAACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009987 GO:0016042 GO:0016053 GO:0016104 GO:0016105 GO:0016114 GO:0016115 GO:0016491 GO:0016705 GO:0016709 GO:0017144 GO:0019741 GO:0019742 GO:0019745 GO:0019752 GO:0032787 GO:0042180 GO:0042181 GO:0042182 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0046394 GO:0055114 GO:0071704 GO:0072330 GO:1901360 GO:1901361 GO:1901362 GO:1901575 GO:1901576 GO:1901615 GO:1901617 GO:1902381 GO:1902382 GO:1902384 GO:1902386

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 ko04726 map00908 map01100 map01110 map04726

Pfam Domains

Protein Families

p450

Protein Analysis

515

Amino Acids

58.71

Weight (kDa)

9.24

Isoelectric Point (pI)

46.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	806
AccI	GTMKAC	1 cut(s)	865
AciI	CCGC	1 cut(s)	1157
AclI	AACGTT	1 cut(s)	1540
AclWI	GGATC	2 cut(s)	417, 430
AcoI	YGGCCR	4 cut(s)	3, 590, 612, 973
AcsI	RAATTY	2 cut(s)	283, 891
AfaI	GTAC	2 cut(s)	21, 411
AfiI	CCNNNNNNNGG	3 cut(s)	1188, 1377, 1514
AjnI	CCWGG	1 cut(s)	1159
AluBI	AGCT	7 cut(s)	174, 490, 522, 648, 676, 1171, 1201
AluI	AGCT	7 cut(s)	174, 490, 522, 648, 676, 1171, 1201
Alw21I	GWGCWC	1 cut(s)	1522
Alw26I	GTCTC	3 cut(s)	153, 974, 1240
AlwI	GGATC	2 cut(s)	417, 430
Ama87I	CYCGRG	1 cut(s)	627
AoxI	GGCC	8 cut(s)	3, 89, 301, 415, 590, 612, 973, 1422
ApaI	GGGCCC	1 cut(s)	305
ApeKI	GCWGC	5 cut(s)	184, 632, 704, 707, 994
ApoI	RAATTY	2 cut(s)	283, 891
Asp700I	GAANNNNTTC	2 cut(s)	369, 1143
AspLEI	GCGC	1 cut(s)	238
AspS9I	GGNCC	4 cut(s)	301, 302, 415, 1373
AsuHPI	GGTGA	5 cut(s)	49, 328, 848, 1250, 1292
AsuII	TTCGAA	1 cut(s)	1186
AvaI	CYCGRG	1 cut(s)	627
AvaII	GGWCC	1 cut(s)	1373
BaeGI	GKGCMC	1 cut(s)	305
BalI	TGGCCA	3 cut(s)	5, 592, 975
BamHI	GGATCC	1 cut(s)	422
BanII	GRGCYC	1 cut(s)	305
BauI	CACGAG	1 cut(s)	1044
BbsI	GAAGAC	1 cut(s)	590
Bbv12I	GWGCWC	1 cut(s)	1522
BbvI	GCAGC	5 cut(s)	171, 619, 716, 719, 981
BccI	CCATC	4 cut(s)	719, 826, 1313, 1505
BciT130I	CCWGG	1 cut(s)	1161
BcoDI	GTCTC	3 cut(s)	153, 974, 1240
BfaI	CTAG	2 cut(s)	101, 407
BfmI	CTRYAG	2 cut(s)	429, 523
BfoI	RGCGCY	1 cut(s)	239
BisI	GCNGC	5 cut(s)	185, 633, 705, 708, 995
BlsI	GCNGC	5 cut(s)	186, 634, 706, 709, 996
BmcAI	AGTACT	1 cut(s)	21
Bme1390I	CCNGG	1 cut(s)	1161
Bme18I	GGWCC	1 cut(s)	1373
BmeT110I	CYCGRG	1 cut(s)	627
BmgT120I	GGNCC	4 cut(s)	301, 302, 415, 1373
BmiI	GGNNCC	4 cut(s)	303, 304, 424, 1369
BmrFI	CCNGG	1 cut(s)	1161
BmsI	GCATC	5 cut(s)	98, 171, 757, 1087, 1276
BpiI	GAAGAC	1 cut(s)	590
BplI	GAGNNNNNCTC	2 cut(s)	777, 809
BpmI	CTGGAG	1 cut(s)	1245
Bpu10I	CCTNAGC	2 cut(s)	794, 1103
Bpu14I	TTCGAA	1 cut(s)	1186
BsaI	GGTCTC	1 cut(s)	974
BsaJI	CCNNGG	5 cut(s)	165, 239, 418, 1125, 1376
BsaXI	ACNNNNNCTCC	4 cut(s)	941, 971, 1218, 1248
Bsc4I	CCNNNNNNNGG	3 cut(s)	1188, 1377, 1514
Bse118I	RCCGGY	2 cut(s)	1219, 1370
Bse1I	ACTGG	3 cut(s)	6, 843, 925
BseBI	CCWGG	1 cut(s)	1161
BseDI	CCNNGG	5 cut(s)	165, 239, 418, 1125, 1376
BseGI	GGATG	5 cut(s)	589, 711, 765, 1291, 1497
BseLI	CCNNNNNNNGG	3 cut(s)	1188, 1377, 1514
BseMII	CTCAG	1 cut(s)	808
BseNI	ACTGG	3 cut(s)	6, 843, 925
BseRI	GAGGAG	1 cut(s)	962
BseSI	GKGCMC	1 cut(s)	305
BseX3I	CGGCCG	1 cut(s)	612
BseXI	GCAGC	5 cut(s)	171, 619, 716, 719, 981
BseYI	CCCAGC	1 cut(s)	469
Bsh1285I	CGRYCG	1 cut(s)	615
BshFI	GGCC	8 cut(s)	5, 91, 303, 417, 592, 614, 975, 1424
BsiEI	CGRYCG	1 cut(s)	615
BsiHKAI	GWGCWC	1 cut(s)	1522
BsiHKCI	CYCGRG	1 cut(s)	627
BsiSI	CCGG	2 cut(s)	1220, 1371
BslI	CCNNNNNNNGG	3 cut(s)	1188, 1377, 1514
BsmAI	GTCTC	3 cut(s)	153, 974, 1240
BsmI	GAATGC	1 cut(s)	473
BsnI	GGCC	8 cut(s)	5, 91, 303, 417, 592, 614, 975, 1424
Bso31I	GGTCTC	1 cut(s)	974
BsoBI	CYCGRG	1 cut(s)	627
Bsp119I	TTCGAA	1 cut(s)	1186
Bsp120I	GGGCCC	1 cut(s)	301
Bsp1286I	GDGCHC	2 cut(s)	305, 1522
Bsp143I	GATC	1 cut(s)	422
Bsp19I	CCATGG	1 cut(s)	1125
BspACI	CCGC	1 cut(s)	1157
BspANI	GGCC	8 cut(s)	5, 91, 303, 417, 592, 614, 975, 1424
BspCNI	CTCAG	1 cut(s)	807
BspHI	TCATGA	1 cut(s)	850
BspLI	GGNNCC	4 cut(s)	303, 304, 424, 1369
BspPI	GGATC	2 cut(s)	417, 430
BspT104I	TTCGAA	1 cut(s)	1186
BspTNI	GGTCTC	1 cut(s)	974
BsrFI	RCCGGY	2 cut(s)	1219, 1370
BsrI	ACTGG	3 cut(s)	6, 843, 925
BssAI	RCCGGY	2 cut(s)	1219, 1370
BssECI	CCNNGG	5 cut(s)	165, 239, 418, 1125, 1376
BssMI	GATC	1 cut(s)	422
BssNAI	GTATAC	1 cut(s)	866
BssSI	CACGAG	1 cut(s)	1044
BssT1I	CCWWGG	4 cut(s)	165, 418, 1125, 1376
Bst1107I	GTATAC	1 cut(s)	866
Bst2BI	CACGAG	1 cut(s)	1044
Bst2UI	CCWGG	1 cut(s)	1161
Bst4CI	ACNGT	3 cut(s)	243, 382, 430
Bst6I	CTCTTC	2 cut(s)	813, 1050
BstBI	TTCGAA	1 cut(s)	1186
BstC8I	GCNNGC	2 cut(s)	973, 1068
BstDEI	CTNAG	3 cut(s)	794, 1019, 1103
BstDSI	CCRYGG	2 cut(s)	239, 1125
BstF5I	GGATG	5 cut(s)	589, 711, 765, 1291, 1497
BstH2I	RGCGCY	1 cut(s)	239
BstHHI	GCGC	1 cut(s)	238
BstKTI	GATC	1 cut(s)	425
BstMAI	GTCTC	3 cut(s)	153, 974, 1240
BstMBI	GATC	1 cut(s)	422
BstMCI	CGRYCG	1 cut(s)	615
BstMWI	GCNNNNNNNGC	2 cut(s)	132, 1421
BstNI	CCWGG	1 cut(s)	1161
BstSCI	CCNGG	1 cut(s)	1159
BstSFI	CTRYAG	2 cut(s)	429, 523
BstSLI	GKGCMC	1 cut(s)	305
BstV1I	GCAGC	5 cut(s)	171, 619, 716, 719, 981
BstV2I	GAAGAC	1 cut(s)	590
BstX2I	RGATCY	1 cut(s)	422
BstYI	RGATCY	1 cut(s)	422
BstZ17I	GTATAC	1 cut(s)	866
BstZI	CGGCCG	1 cut(s)	612
BsuRI	GGCC	8 cut(s)	5, 91, 303, 417, 592, 614, 975, 1424
BtgI	CCRYGG	2 cut(s)	239, 1125
BtsCI	GGATG	5 cut(s)	589, 711, 765, 1291, 1497
BtsIMutI	CAGTG	2 cut(s)	426, 918
Cac8I	GCNNGC	2 cut(s)	973, 1068
CciI	TCATGA	1 cut(s)	850
CfoI	GCGC	1 cut(s)	238
Cfr10I	RCCGGY	2 cut(s)	1219, 1370
Cfr13I	GGNCC	4 cut(s)	301, 302, 415, 1373
Csp6I	GTAC	2 cut(s)	20, 410
CviQI	GTAC	2 cut(s)	20, 410
DdeI	CTNAG	3 cut(s)	794, 1019, 1103
DpnI	GATC	1 cut(s)	424
DpnII	GATC	1 cut(s)	422
DraI	TTTAAA	1 cut(s)	261
EaeI	YGGCCR	4 cut(s)	3, 590, 612, 973
EagI	CGGCCG	1 cut(s)	612
Eam1104I	CTCTTC	2 cut(s)	813, 1050
EarI	CTCTTC	2 cut(s)	813, 1050
EclXI	CGGCCG	1 cut(s)	612
Eco130I	CCWWGG	4 cut(s)	165, 418, 1125, 1376
Eco24I	GRGCYC	1 cut(s)	305
Eco31I	GGTCTC	1 cut(s)	974
Eco47I	GGWCC	1 cut(s)	1373
Eco52I	CGGCCG	1 cut(s)	612
Eco88I	CYCGRG	1 cut(s)	627
EcoO109I	RGGNCCY	2 cut(s)	302, 415
EcoRI	GAATTC	1 cut(s)	283
EcoRII	CCWGG	1 cut(s)	1159
EcoT14I	CCWWGG	4 cut(s)	165, 418, 1125, 1376
EcoT38I	GRGCYC	1 cut(s)	305
ErhI	CCWWGG	4 cut(s)	165, 418, 1125, 1376
FauI	CCCGC	1 cut(s)	1164
FblI	GTMKAC	1 cut(s)	865
Fnu4HI	GCNGC	5 cut(s)	185, 633, 705, 708, 995
FokI	GGATG	5 cut(s)	596, 698, 772, 1298, 1484
FriOI	GRGCYC	1 cut(s)	305
Fsp4HI	GCNGC	5 cut(s)	185, 633, 705, 708, 995
FspBI	CTAG	2 cut(s)	101, 407
GlaI	GCGC	1 cut(s)	237
GluI	GCNGC	5 cut(s)	185, 633, 705, 708, 995
GsaI	CCCAGC	1 cut(s)	473
GsuI	CTGGAG	1 cut(s)	1245
HaeII	RGCGCY	1 cut(s)	239
HaeIII	GGCC	8 cut(s)	5, 91, 303, 417, 592, 614, 975, 1424
HapII	CCGG	2 cut(s)	1220, 1371
HhaI	GCGC	1 cut(s)	238
Hin6I	GCGC	1 cut(s)	236
HinP1I	GCGC	1 cut(s)	236
HinfI	GANTC	4 cut(s)	328, 875, 1227, 1435
HpaII	CCGG	2 cut(s)	1220, 1371
HphI	GGTGA	5 cut(s)	49, 328, 848, 1250, 1292
Hpy166II	GTNNAC	5 cut(s)	319, 724, 866, 1258, 1538
Hpy188I	TCNGA	2 cut(s)	375, 1318
Hpy188III	TCNNGA	5 cut(s)	325, 332, 653, 851, 896
Hpy8I	GTNNAC	5 cut(s)	319, 724, 866, 1258, 1538
HpyAV	CCTTC	8 cut(s)	109, 560, 757, 880, 1182, 1193, 1200, 1511
HpyCH4III	ACNGT	3 cut(s)	243, 382, 430
HpyCH4IV	ACGT	1 cut(s)	1540
HpyF10VI	GCNNNNNNNGC	2 cut(s)	132, 1421
HpyF3I	CTNAG	3 cut(s)	794, 1019, 1103
HpySE526I	ACGT	1 cut(s)	1540
HspAI	GCGC	1 cut(s)	236
Kzo9I	GATC	1 cut(s)	422
LmnI	GCTCC	3 cut(s)	118, 1367, 1486
Lsp1109I	GCAGC	5 cut(s)	171, 619, 716, 719, 981
LweI	GCATC	5 cut(s)	98, 171, 757, 1087, 1276
MaeI	CTAG	2 cut(s)	101, 407
MaeII	ACGT	1 cut(s)	1540
MaeIII	GTNAC	3 cut(s)	501, 1120, 1488
MalI	GATC	1 cut(s)	424
MboI	GATC	1 cut(s)	422
MboII	GAAGA	9 cut(s)	347, 469, 590, 672, 830, 947, 1067, 1136, 1280
MfeI	CAATTG	1 cut(s)	1008
MflI	RGATCY	1 cut(s)	422
MhlI	GDGCHC	2 cut(s)	305, 1522
MlsI	TGGCCA	3 cut(s)	5, 592, 975
MluNI	TGGCCA	3 cut(s)	5, 592, 975
MlyI	GAGTC	2 cut(s)	884, 1236
MmeI	TCCRAC	2 cut(s)	561, 903
Mox20I	TGGCCA	3 cut(s)	5, 592, 975
MroXI	GAANNNNTTC	2 cut(s)	369, 1143
MscI	TGGCCA	3 cut(s)	5, 592, 975
MseI	TTAA	5 cut(s)	249, 260, 537, 828, 1532
MslI	CAYNNNNRTG	2 cut(s)	58, 923
Msp20I	TGGCCA	3 cut(s)	5, 592, 975
MspA1I	CMGCKG	1 cut(s)	522
MspI	CCGG	2 cut(s)	1220, 1371
MspR9I	CCNGG	1 cut(s)	1161
MunI	CAATTG	1 cut(s)	1008
Mva1269I	GAATGC	1 cut(s)	473
MvaI	CCWGG	1 cut(s)	1161
MwoI	GCNNNNNNNGC	2 cut(s)	132, 1421
NcoI	CCATGG	1 cut(s)	1125
NdeII	GATC	1 cut(s)	422
NlaIV	GGNNCC	4 cut(s)	303, 304, 424, 1369
NmuCI	GTSAC	1 cut(s)	1120
NspV	TTCGAA	1 cut(s)	1186
PagI	TCATGA	1 cut(s)	850
PcsI	WCGNNNNNNNCGW	1 cut(s)	1183
PctI	GAATGC	1 cut(s)	473
PdmI	GAANNNNTTC	2 cut(s)	369, 1143
PfeI	GAWTC	2 cut(s)	328, 1435
PkrI	GCNGC	5 cut(s)	186, 634, 706, 709, 996
PleI	GAGTC	2 cut(s)	883, 1235
PpsI	GAGTC	2 cut(s)	883, 1235
PsiI	TTATAA	1 cut(s)	806
Psp1406I	AACGTT	1 cut(s)	1540
Psp6I	CCWGG	1 cut(s)	1159
PspFI	CCCAGC	1 cut(s)	469
PspGI	CCWGG	1 cut(s)	1159
PspN4I	GGNNCC	4 cut(s)	303, 304, 424, 1369
PspOMI	GGGCCC	1 cut(s)	301
PspPI	GGNCC	4 cut(s)	301, 302, 415, 1373
PsuI	RGATCY	1 cut(s)	422
PvuII	CAGCTG	1 cut(s)	522
RsaI	GTAC	2 cut(s)	21, 411
RsaNI	GTAC	2 cut(s)	20, 410
RseI	CAYNNNNRTG	2 cut(s)	58, 923
SaqAI	TTAA	5 cut(s)	249, 260, 537, 828, 1532
SatI	GCNGC	5 cut(s)	185, 633, 705, 708, 995
Sau3AI	GATC	1 cut(s)	422
Sau96I	GGNCC	4 cut(s)	301, 302, 415, 1373
ScaI	AGTACT	1 cut(s)	21
SchI	GAGTC	2 cut(s)	884, 1236
ScrFI	CCNGG	1 cut(s)	1161
SduI	GDGCHC	2 cut(s)	305, 1522
SfaNI	GCATC	5 cut(s)	98, 171, 757, 1087, 1276
SfcI	CTRYAG	2 cut(s)	429, 523
SfuI	TTCGAA	1 cut(s)	1186
SinI	GGWCC	1 cut(s)	1373
SmiMI	CAYNNNNRTG	2 cut(s)	58, 923
SsiI	CCGC	1 cut(s)	1157
SspI	AATATT	3 cut(s)	351, 370, 669
SspMI	CTAG	2 cut(s)	101, 407
StyD4I	CCNGG	1 cut(s)	1159
StyI	CCWWGG	4 cut(s)	165, 418, 1125, 1376
TaaI	ACNGT	3 cut(s)	243, 382, 430
TaiI	ACGT	1 cut(s)	1543
TaqI	TCGA	5 cut(s)	399, 895, 1147, 1186, 1230
TatI	WGTACW	2 cut(s)	19, 409
TfiI	GAWTC	2 cut(s)	328, 1435
Tru1I	TTAA	5 cut(s)	249, 260, 537, 828, 1532
Tru9I	TTAA	5 cut(s)	249, 260, 537, 828, 1532
TscAI	CASTG	2 cut(s)	433, 925
TseFI	GTSAC	1 cut(s)	1120
TseI	GCWGC	5 cut(s)	184, 632, 704, 707, 994
Tsp45I	GTSAC	1 cut(s)	1120
TspDTI	ATGAA	4 cut(s)	224, 378, 561, 776
TspGWI	ACGGA	1 cut(s)	720
TspRI	CASTG	2 cut(s)	433, 925
VpaK11BI	GGWCC	1 cut(s)	1373
XapI	RAATTY	2 cut(s)	283, 891
XmiI	GTMKAC	1 cut(s)	865
XmnI	GAANNNNTTC	2 cut(s)	369, 1143
XspI	CTAG	2 cut(s)	101, 407
ZrmI	AGTACT	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.