Prupe.1G536900_v2.0.a1

E3 ubiquitin-protein ligase BRE1-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Forward (+)
43855004 .. 43855770
767 bp
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UTR
Exon/CDS
Intron
Prupe.1G536900.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 189 bp
ATGGCTCGTAGCTCCACCACTTCTCCACCCAATAACCATAGCGTCGATGCAGCAGTTCTCCAGTACCAGAACCAGAGACTTCTTCAGCAAATGGACAAACAGAAGCATGATTTGCAAGATCTTGAAGCCAAAATTAAGGAACTAAAGGATAAGCAAGGTTTACCACTGTTTGGTGATGCCACCTTTTGA

Protein Analysis

63

Amino Acids

7.04

Weight (kDa)

6.71

Isoelectric Point (pI)

55.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 170
AcuI CTGAAG 1 cut(s) 68
AfaI GTAC 1 cut(s) 65
AfiI CCNNNNNNNGG 1 cut(s) 170
AgsI TTSAA 1 cut(s) 125
AluBI AGCT 1 cut(s) 12
AluI AGCT 1 cut(s) 12
Alw26I GTCTC 1 cut(s) 70
ApeKI GCWGC 1 cut(s) 50
AsuHPI GGTGA 1 cut(s) 185
BbvI GCAGC 1 cut(s) 62
BcoDI GTCTC 1 cut(s) 70
BglII AGATCT 1 cut(s) 118
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
BmsI GCATC 2 cut(s) 37, 166
BpmI CTGGAG 1 cut(s) 44
BsaXI ACNNNNNCTCC 2 cut(s) 7, 37
Bsc4I CCNNNNNNNGG 1 cut(s) 170
Bse1I ACTGG 1 cut(s) 61
BseLI CCNNNNNNNGG 1 cut(s) 170
BseNI ACTGG 1 cut(s) 61
BseXI GCAGC 1 cut(s) 62
BslI CCNNNNNNNGG 1 cut(s) 170
BsmAI GTCTC 1 cut(s) 70
Bsp143I GATC 1 cut(s) 118
BsrI ACTGG 1 cut(s) 61
BssMI GATC 1 cut(s) 118
Bst4CI ACNGT 1 cut(s) 168
BstAPI GCANNNNNTGC 1 cut(s) 112
BstKTI GATC 1 cut(s) 121
BstMAI GTCTC 1 cut(s) 70
BstMBI GATC 1 cut(s) 118
BstMWI GCNNNNNNNGC 1 cut(s) 112
BstV1I GCAGC 1 cut(s) 62
BstX2I RGATCY 1 cut(s) 118
BstYI RGATCY 1 cut(s) 118
BtsIMutI CAGTG 1 cut(s) 164
CseI GACGC 1 cut(s) 31
Csp6I GTAC 1 cut(s) 64
CviAII CATG 1 cut(s) 107
CviJI RGCY 3 cut(s) 5, 12, 128
CviKI_1 RGCY 3 cut(s) 5, 12, 128
CviQI GTAC 1 cut(s) 64
DpnI GATC 1 cut(s) 120
DpnII GATC 1 cut(s) 118
Eco57I CTGAAG 1 cut(s) 68
FaeI CATG 1 cut(s) 110
FaiI YATR 2 cut(s) 39, 108
FatI CATG 1 cut(s) 106
Fnu4HI GCNGC 1 cut(s) 51
Fsp4HI GCNGC 1 cut(s) 51
GluI GCNGC 1 cut(s) 51
GsuI CTGGAG 1 cut(s) 44
HgaI GACGC 1 cut(s) 31
Hin1II CATG 1 cut(s) 110
HphI GGTGA 1 cut(s) 185
Hpy166II GTNNAC 1 cut(s) 161
Hpy188III TCNNGA 1 cut(s) 122
Hpy8I GTNNAC 1 cut(s) 161
Hpy99I CGWCG 1 cut(s) 47
HpyCH4III ACNGT 1 cut(s) 168
HpyCH4V TGCA 2 cut(s) 50, 115
HpyF10VI GCNNNNNNNGC 1 cut(s) 112
Hsp92II CATG 1 cut(s) 110
Kzo9I GATC 1 cut(s) 118
LmnI GCTCC 1 cut(s) 17
LpnPI CCDG 3 cut(s) 74, 80, 86
Lsp1109I GCAGC 1 cut(s) 62
LweI GCATC 2 cut(s) 37, 166
MalI GATC 1 cut(s) 120
MboI GATC 1 cut(s) 118
MboII GAAGA 1 cut(s) 74
MflI RGATCY 1 cut(s) 118
MluCI AATT 1 cut(s) 132
MseI TTAA 1 cut(s) 135
MwoI GCNNNNNNNGC 1 cut(s) 112
NdeII GATC 1 cut(s) 118
NlaIII CATG 1 cut(s) 110
PflMI CCANNNNNTGG 1 cut(s) 170
PkrI GCNGC 1 cut(s) 52
PsuI RGATCY 1 cut(s) 118
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
SaqAI TTAA 1 cut(s) 135
SatI GCNGC 1 cut(s) 51
Sau3AI GATC 1 cut(s) 118
SetI ASST 3 cut(s) 14, 160, 185
SfaNI GCATC 2 cut(s) 37, 166
SgeI CNNG 8 cut(s) 18, 73, 79, 85, 119, 128, 134, 167
Sse9I AATT 1 cut(s) 132
TaaI ACNGT 1 cut(s) 168
TaqI TCGA 1 cut(s) 45
TasI AATT 1 cut(s) 132
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TscAI CASTG 1 cut(s) 171
TseI GCWGC 1 cut(s) 50
TspRI CASTG 1 cut(s) 171
Van91I CCANNNNNTGG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.