Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

43909410 .. 43911405

Gene Structure 1996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G537500.1_v2.0.a1.CDS.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1482 bp

ATGTGTTTGAGGCCAAAGAAACTAGAAAGATGCTTGAGGGAGCAAGGCTTTACAGGCAATTCTTACAGGCTTTTGTTTGGAGACACCAAGGATAGCTCAATGATGCTGCGACAAGCACAATCCAAACCCATGAAACTCTCCACCTCCCATGATATAGCGCCACGAGTCATGCCATTTGTCCATCAAATTGTGAAAACTTACGGTAGGAATTCTTTTGTTTGGATGGGCCCCATGCCAAAGTTGAACATCATGAACCCAGAAGATTTGAAAGAAATCTTCAACAAGCGTCAAAATTTTCAGAGGCCATCAGCAAACCCTCTTATCAAGTTGCTAGTACAGGGCCTTCTACACATTGAAGATGAGAAATGGGCTAAACACAGAAAGATTATCAAGCCAGCATTCCATTTAGAGAAGCTAAAGGGTATGTTACCAACATTTTACCAAAGCTGTAGCGACATGATTAACGAGTGGAAGGGGTTGGTGTCCAAAGACGGTTCATGTGAGTTCGATGTGTGGCCATGTCTTAAAAATTTGTCGGCAGATGTGATTGCTCGGGCTGCATTTGGAAGTAGCTATCAAGAGGGAAGAAAAATATTTCAGCTCCTGCAACAGCAAGATAAAAATTTTTCATTAGTCGTCCGAAGTGTTTACATTCCAGGATCGAGGTTTCTACCAACCAAGCATAACAGGAGGATGAAGGAAATAAATAAAGAAATAAATGTGTTGCTCAAGGGTATTATAAATAAAAGAGAAGAGGAAATTAAGTTGGGTGAAGACAATAAAGATGACTTGTTAGGTATACTTATGGAGTCCAATTTGAAGGAAATTCGCGAACATGGGAACAAGACAGACACTGGAATGAGTATTCAAGATGTAATTGAGGAGTGTAGGTTGTTTTACTTGGCTGGTTCAGAGAGCACTTCTACGCTGCTTGTTTGGGCAATGATTTTGCTGGGTCAAAACCAGAATTGGCAAGCTCGTGCAAGGGAAGAGGTCTTGCAAGCCTTTGAAAGCAACCCACCAAGCTTTAATGCCCTAAGCCAACTAAAAGTTGTGACCATGGTTTTACTTGAAGTTCTTCGATTATACCCAGCAGGCGTTGAGCTTCCACGAACCACTTGCAAGAAAACACAGCTTGGAAAATTCTTATTGCCGGCCGGAGTCCTTGTCTCCTTACACATAATGTTTGTTCACCATGACAAAGAATTGTGGGGTGAGGATGCAGATGAGTTCAAGCCAGAGAGGTTTTCAGAAGGAATTTCAAAGGCAACAAAGAACCAATTTGCATACTTCCCTTTCGGTGCCGGTCCGAGGATTTGCATTGGACAGAACTTTGCTATGCAGGAAGCAAAATTAGCCTTGGCATTGATTCTGCAACACTTTACCTTTGATCTCTCTCCATCCTATGCTCATGCTCCTACGACACAAGGAAACCTTCTTCAACCTCAATATGGTGCTCATATCATTTTACGTAAACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009987 GO:0016042 GO:0016053 GO:0016104 GO:0016105 GO:0016114 GO:0016115 GO:0016491 GO:0016705 GO:0016709 GO:0017144 GO:0019741 GO:0019742 GO:0019745 GO:0019752 GO:0032787 GO:0042180 GO:0042181 GO:0042182 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0046394 GO:0055114 GO:0071704 GO:0072330 GO:1901360 GO:1901361 GO:1901362 GO:1901575 GO:1901576 GO:1901615 GO:1901617 GO:1902381 GO:1902382 GO:1902384 GO:1902386

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 ko04726 map00908 map01100 map01110 map04726

Pfam Domains

Protein Families

p450

Protein Analysis

494

Amino Acids

56.44

Weight (kDa)

9.32

Isoelectric Point (pI)

48.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	740
AccB1I	GGYRCC	1 cut(s)	1301
AccI	GTMKAC	1 cut(s)	799
AccII	CGCG	1 cut(s)	831
AclI	AACGTT	1 cut(s)	1477
AclWI	GGATC	1 cut(s)	667
AcoI	YGGCCR	2 cut(s)	515, 1155
AcsI	RAATTY	7 cut(s)	208, 292, 529, 622, 825, 1142, 1257
AfaI	GTAC	1 cut(s)	336
AfiI	CCNNNNNNNGG	2 cut(s)	1311, 1451
AjnI	CCWGG	1 cut(s)	655
AluBI	AGCT	9 cut(s)	96, 415, 447, 573, 601, 977, 1026, 1105, 1135
AluI	AGCT	9 cut(s)	96, 415, 447, 573, 601, 977, 1026, 1105, 1135
Alw21I	GWGCWC	2 cut(s)	920, 1459
Alw26I	GTCTC	2 cut(s)	75, 1174
AlwI	GGATC	1 cut(s)	667
AlwNI	CAGNNNCTG	2 cut(s)	604, 854
Ama87I	CYCGRG	1 cut(s)	552
AoxI	GGCC	6 cut(s)	11, 226, 302, 340, 515, 1155
ApaI	GGGCCC	1 cut(s)	230
ApeKI	GCWGC	3 cut(s)	106, 557, 928
ApoI	RAATTY	7 cut(s)	208, 292, 529, 622, 825, 1142, 1257
Asp700I	GAANNNNTTC	1 cut(s)	1077
AspLEI	GCGC	1 cut(s)	160
AspS9I	GGNCC	4 cut(s)	226, 227, 340, 1307
AsuHPI	GGTGA	3 cut(s)	782, 1184, 1226
AvaI	CYCGRG	1 cut(s)	552
AvaII	GGWCC	1 cut(s)	1307
BaeGI	GKGCMC	1 cut(s)	230
BalI	TGGCCA	1 cut(s)	517
BanI	GGYRCC	1 cut(s)	1301
BanII	GRGCYC	1 cut(s)	230
BarI	GAAGNNNNNNTAC	2 cut(s)	327, 359
BauI	CACGAG	2 cut(s)	162, 978
BbsI	GAAGAC	1 cut(s)	780
Bbv12I	GWGCWC	2 cut(s)	920, 1459
BbvI	GCAGC	3 cut(s)	93, 544, 915
BccI	CCATC	4 cut(s)	189, 217, 313, 1408
BcgI	CGANNNNNNTGC	2 cut(s)	1101, 1135
BciT130I	CCWGG	1 cut(s)	657
BcoDI	GTCTC	2 cut(s)	75, 1174
BfaI	CTAG	2 cut(s)	23, 332
BfmI	CTRYAG	1 cut(s)	448
BfoI	RGCGCY	1 cut(s)	161
BisI	GCNGC	3 cut(s)	107, 558, 929
BlsI	GCNGC	3 cut(s)	108, 559, 930
Bme1390I	CCNGG	1 cut(s)	657
Bme18I	GGWCC	1 cut(s)	1307
BmeT110I	CYCGRG	1 cut(s)	552
BmgT120I	GGNCC	4 cut(s)	226, 227, 340, 1307
BmiI	GGNNCC	3 cut(s)	228, 229, 1303
BmrFI	CCNGG	1 cut(s)	657
BmsI	GCATC	3 cut(s)	20, 93, 1210
BpiI	GAAGAC	1 cut(s)	780
Bpu10I	CCTNAGC	1 cut(s)	1037
BpuEI	CTTGAG	2 cut(s)	55, 713
BsaAI	YACGTR	1 cut(s)	1472
BsaJI	CCNNGG	4 cut(s)	87, 1059, 1310, 1359
BsaXI	ACNNNNNCTCC	4 cut(s)	875, 905, 1152, 1182
Bsc4I	CCNNNNNNNGG	2 cut(s)	1311, 1451
Bse118I	RCCGGY	2 cut(s)	1153, 1304
Bse1I	ACTGG	1 cut(s)	859
Bse3DI	GCAATG	1 cut(s)	948
BseBI	CCWGG	1 cut(s)	657
BseDI	CCNNGG	4 cut(s)	87, 1059, 1310, 1359
BseGI	GGATG	4 cut(s)	228, 699, 1225, 1400
BseLI	CCNNNNNNNGG	2 cut(s)	1311, 1451
BseMI	GCAATG	1 cut(s)	948
BseNI	ACTGG	1 cut(s)	859
BseRI	GAGGAG	1 cut(s)	896
BseSI	GKGCMC	1 cut(s)	230
BseX3I	CGGCCG	1 cut(s)	1155
BseXI	GCAGC	3 cut(s)	93, 544, 915
BseYI	CCCAGC	2 cut(s)	952, 1090
Bsh1236I	CGCG	1 cut(s)	831
Bsh1285I	CGRYCG	1 cut(s)	1158
BshFI	GGCC	6 cut(s)	13, 228, 304, 342, 517, 1157
BshNI	GGYRCC	1 cut(s)	1301
BsiEI	CGRYCG	1 cut(s)	1158
BsiHKAI	GWGCWC	2 cut(s)	920, 1459
BsiHKCI	CYCGRG	1 cut(s)	552
BsiSI	CCGG	3 cut(s)	1154, 1158, 1305
BslI	CCNNNNNNNGG	2 cut(s)	1311, 1451
BsmAI	GTCTC	2 cut(s)	75, 1174
BsmI	GAATGC	1 cut(s)	398
BsnI	GGCC	6 cut(s)	13, 228, 304, 342, 517, 1157
BsoBI	CYCGRG	1 cut(s)	552
Bsp120I	GGGCCC	1 cut(s)	226
Bsp1286I	GDGCHC	3 cut(s)	230, 920, 1459
Bsp143I	GATC	2 cut(s)	659, 1390
Bsp19I	CCATGG	1 cut(s)	1059
Bsp68I	TCGCGA	1 cut(s)	831
BspANI	GGCC	6 cut(s)	13, 228, 304, 342, 517, 1157
BspFNI	CGCG	1 cut(s)	831
BspHI	TCATGA	1 cut(s)	249
BspLI	GGNNCC	3 cut(s)	228, 229, 1303
BspPI	GGATC	1 cut(s)	667
BspT107I	GGYRCC	1 cut(s)	1301
BsrDI	GCAATG	1 cut(s)	948
BsrFI	RCCGGY	2 cut(s)	1153, 1304
BsrI	ACTGG	1 cut(s)	859
BssAI	RCCGGY	2 cut(s)	1153, 1304
BssECI	CCNNGG	4 cut(s)	87, 1059, 1310, 1359
BssMI	GATC	2 cut(s)	659, 1390
BssNAI	GTATAC	1 cut(s)	800
BssSI	CACGAG	2 cut(s)	162, 978
BssT1I	CCWWGG	3 cut(s)	87, 1059, 1359
Bst1107I	GTATAC	1 cut(s)	800
Bst2BI	CACGAG	2 cut(s)	162, 978
Bst2UI	CCWGG	1 cut(s)	657
Bst4CI	ACNGT	2 cut(s)	203, 494
Bst6I	CTCTTC	2 cut(s)	747, 984
BstBAI	YACGTR	1 cut(s)	1472
BstC8I	GCNNGC	5 cut(s)	396, 975, 1002, 1096, 1155
BstDEI	CTNAG	1 cut(s)	1037
BstDSI	CCRYGG	1 cut(s)	1059
BstF5I	GGATG	4 cut(s)	228, 699, 1225, 1400
BstFNI	CGCG	1 cut(s)	831
BstH2I	RGCGCY	1 cut(s)	161
BstHHI	GCGC	1 cut(s)	160
BstKTI	GATC	2 cut(s)	662, 1393
BstMAI	GTCTC	2 cut(s)	75, 1174
BstMBI	GATC	2 cut(s)	659, 1390
BstMCI	CGRYCG	1 cut(s)	1158
BstMWI	GCNNNNNNNGC	3 cut(s)	54, 557, 1355
BstNI	CCWGG	1 cut(s)	657
BstSCI	CCNGG	1 cut(s)	655
BstSFI	CTRYAG	1 cut(s)	448
BstSLI	GKGCMC	1 cut(s)	230
BstSNI	TACGTA	1 cut(s)	1472
BstUI	CGCG	1 cut(s)	831
BstV1I	GCAGC	3 cut(s)	93, 544, 915
BstV2I	GAAGAC	1 cut(s)	780
BstZ17I	GTATAC	1 cut(s)	800
BstZI	CGGCCG	1 cut(s)	1155
BsuRI	GGCC	6 cut(s)	13, 228, 304, 342, 517, 1157
BtgI	CCRYGG	1 cut(s)	1059
BtsCI	GGATG	4 cut(s)	228, 699, 1225, 1400
BtsIMutI	CAGTG	1 cut(s)	852
BtuMI	TCGCGA	1 cut(s)	831
Cac8I	GCNNGC	5 cut(s)	396, 975, 1002, 1096, 1155
CaiI	CAGNNNCTG	2 cut(s)	604, 854
CciI	TCATGA	1 cut(s)	249
CfoI	GCGC	1 cut(s)	160
Cfr10I	RCCGGY	2 cut(s)	1153, 1304
Cfr13I	GGNCC	4 cut(s)	226, 227, 340, 1307
CpoI	CGGWCCG	1 cut(s)	1307
CseI	GACGC	1 cut(s)	275
Csp6I	GTAC	1 cut(s)	335
CspI	CGGWCCG	1 cut(s)	1307
CviQI	GTAC	1 cut(s)	335
DdeI	CTNAG	1 cut(s)	1037
DpnI	GATC	2 cut(s)	661, 1392
DpnII	GATC	2 cut(s)	659, 1390
EaeI	YGGCCR	2 cut(s)	515, 1155
EagI	CGGCCG	1 cut(s)	1155
Eam1104I	CTCTTC	2 cut(s)	747, 984
EarI	CTCTTC	2 cut(s)	747, 984
EclXI	CGGCCG	1 cut(s)	1155
Eco105I	TACGTA	1 cut(s)	1472
Eco130I	CCWWGG	3 cut(s)	87, 1059, 1359
Eco24I	GRGCYC	1 cut(s)	230
Eco47I	GGWCC	1 cut(s)	1307
Eco52I	CGGCCG	1 cut(s)	1155
Eco88I	CYCGRG	1 cut(s)	552
EcoO109I	RGGNCCY	2 cut(s)	227, 340
EcoRI	GAATTC	1 cut(s)	208
EcoRII	CCWGG	1 cut(s)	655
EcoT14I	CCWWGG	3 cut(s)	87, 1059, 1359
EcoT38I	GRGCYC	1 cut(s)	230
ErhI	CCWWGG	3 cut(s)	87, 1059, 1359
FalI	AAGNNNNNCTT	2 cut(s)	1419, 1451
FblI	GTMKAC	1 cut(s)	799
Fnu4HI	GCNGC	3 cut(s)	107, 558, 929
FokI	GGATG	4 cut(s)	235, 706, 1232, 1387
FriOI	GRGCYC	1 cut(s)	230
Fsp4HI	GCNGC	3 cut(s)	107, 558, 929
FspBI	CTAG	2 cut(s)	23, 332
GlaI	GCGC	1 cut(s)	159
GluI	GCNGC	3 cut(s)	107, 558, 929
GsaI	CCCAGC	2 cut(s)	956, 1094
HaeII	RGCGCY	1 cut(s)	161
HaeIII	GGCC	6 cut(s)	13, 228, 304, 342, 517, 1157
HapII	CCGG	3 cut(s)	1154, 1158, 1305
HgaI	GACGC	1 cut(s)	275
HhaI	GCGC	1 cut(s)	160
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HindIII	AAGCTT	1 cut(s)	1024
HinfI	GANTC	4 cut(s)	165, 809, 1161, 1369
HpaII	CCGG	3 cut(s)	1154, 1158, 1305
HphI	GGTGA	3 cut(s)	782, 1184, 1226
Hpy166II	GTNNAC	4 cut(s)	649, 800, 1192, 1475
Hpy188I	TCNGA	5 cut(s)	300, 641, 913, 1252, 1311
Hpy188III	TCNNGA	4 cut(s)	250, 578, 830, 869
Hpy8I	GTNNAC	4 cut(s)	649, 800, 1192, 1475
HpyAV	CCTTC	6 cut(s)	353, 466, 691, 814, 1247, 1445
HpyCH4III	ACNGT	2 cut(s)	203, 494
HpyCH4IV	ACGT	2 cut(s)	1471, 1477
HpyF10VI	GCNNNNNNNGC	3 cut(s)	54, 557, 1355
HpyF3I	CTNAG	1 cut(s)	1037
HpySE526I	ACGT	2 cut(s)	1471, 1477
HspAI	GCGC	1 cut(s)	158
KroI	GCCGGC	1 cut(s)	1153
KroNI	GCCGGC	1 cut(s)	1155
Kzo9I	GATC	2 cut(s)	659, 1390
LmnI	GCTCC	3 cut(s)	40, 606, 1420
Lsp1109I	GCAGC	3 cut(s)	93, 544, 915
LweI	GCATC	3 cut(s)	20, 93, 1210
MaeI	CTAG	2 cut(s)	23, 332
MaeII	ACGT	2 cut(s)	1471, 1477
MaeIII	GTNAC	2 cut(s)	426, 1054
MalI	GATC	2 cut(s)	661, 1392
MboI	GATC	2 cut(s)	659, 1390
MboII	GAAGA	9 cut(s)	268, 272, 368, 597, 764, 785, 1001, 1070, 1430
MhlI	GDGCHC	3 cut(s)	230, 920, 1459
MlsI	TGGCCA	1 cut(s)	517
MluNI	TGGCCA	1 cut(s)	517
MlyI	GAGTC	3 cut(s)	174, 818, 1170
Mox20I	TGGCCA	1 cut(s)	517
MroNI	GCCGGC	1 cut(s)	1153
MroXI	GAANNNNTTC	1 cut(s)	1077
MscI	TGGCCA	1 cut(s)	517
MseI	TTAA	4 cut(s)	462, 525, 762, 1029
MslI	CAYNNNNRTG	1 cut(s)	857
Msp20I	TGGCCA	1 cut(s)	517
MspI	CCGG	3 cut(s)	1154, 1158, 1305
MspR9I	CCNGG	1 cut(s)	657
Mva1269I	GAATGC	1 cut(s)	398
MvaI	CCWGG	1 cut(s)	657
MvnI	CGCG	1 cut(s)	831
MwoI	GCNNNNNNNGC	3 cut(s)	54, 557, 1355
NaeI	GCCGGC	1 cut(s)	1155
NcoI	CCATGG	1 cut(s)	1059
NdeII	GATC	2 cut(s)	659, 1390
NgoMIV	GCCGGC	1 cut(s)	1153
NlaIV	GGNNCC	3 cut(s)	228, 229, 1303
NmuCI	GTSAC	1 cut(s)	1054
NruI	TCGCGA	1 cut(s)	831
PagI	TCATGA	1 cut(s)	249
PctI	GAATGC	1 cut(s)	398
PdiI	GCCGGC	1 cut(s)	1155
PdmI	GAANNNNTTC	1 cut(s)	1077
PfeI	GAWTC	1 cut(s)	1369
PfoI	TCCNGGA	1 cut(s)	655
PkrI	GCNGC	3 cut(s)	108, 559, 930
PleI	GAGTC	3 cut(s)	173, 817, 1169
PpsI	GAGTC	3 cut(s)	173, 817, 1169
Ppu21I	YACGTR	1 cut(s)	1472
PsiI	TTATAA	1 cut(s)	740
Psp1406I	AACGTT	1 cut(s)	1477
Psp6I	CCWGG	1 cut(s)	655
PspFI	CCCAGC	2 cut(s)	952, 1090
PspGI	CCWGG	1 cut(s)	655
PspN4I	GGNNCC	3 cut(s)	228, 229, 1303
PspOMI	GGGCCC	1 cut(s)	226
PspPI	GGNCC	4 cut(s)	226, 227, 340, 1307
PstNI	CAGNNNCTG	2 cut(s)	604, 854
RruI	TCGCGA	1 cut(s)	831
RsaI	GTAC	1 cut(s)	336
RsaNI	GTAC	1 cut(s)	335
RseI	CAYNNNNRTG	1 cut(s)	857
Rsr2I	CGGWCCG	1 cut(s)	1307
RsrII	CGGWCCG	1 cut(s)	1307
SaqAI	TTAA	4 cut(s)	462, 525, 762, 1029
SatI	GCNGC	3 cut(s)	107, 558, 929
Sau3AI	GATC	2 cut(s)	659, 1390
Sau96I	GGNCC	4 cut(s)	226, 227, 340, 1307
SchI	GAGTC	3 cut(s)	174, 818, 1170
ScrFI	CCNGG	1 cut(s)	657
SduI	GDGCHC	3 cut(s)	230, 920, 1459
SfaNI	GCATC	3 cut(s)	20, 93, 1210
SfcI	CTRYAG	1 cut(s)	448
SinI	GGWCC	1 cut(s)	1307
SmiMI	CAYNNNNRTG	1 cut(s)	857
SmlI	CTYRAG	2 cut(s)	34, 728
SmoI	CTYRAG	2 cut(s)	34, 728
SnaBI	TACGTA	1 cut(s)	1472
SspI	AATATT	1 cut(s)	594
SspMI	CTAG	2 cut(s)	23, 332
StyD4I	CCNGG	1 cut(s)	655
StyI	CCWWGG	3 cut(s)	87, 1059, 1359
TaaI	ACNGT	2 cut(s)	203, 494
TaiI	ACGT	2 cut(s)	1474, 1480
TaqI	TCGA	3 cut(s)	507, 662, 1081
TatI	WGTACW	1 cut(s)	334
TfiI	GAWTC	1 cut(s)	1369
Tru1I	TTAA	4 cut(s)	462, 525, 762, 1029
Tru9I	TTAA	4 cut(s)	462, 525, 762, 1029
TscAI	CASTG	1 cut(s)	859
TseFI	GTSAC	1 cut(s)	1054
TseI	GCWGC	3 cut(s)	106, 557, 928
Tsp45I	GTSAC	1 cut(s)	1054
TspDTI	ATGAA	5 cut(s)	146, 266, 486, 618, 710
TspRI	CASTG	1 cut(s)	859
VpaK11BI	GGWCC	1 cut(s)	1307
XapI	RAATTY	7 cut(s)	208, 292, 529, 622, 825, 1142, 1257
XmiI	GTMKAC	1 cut(s)	799
XmnI	GAANNNNTTC	1 cut(s)	1077
XspI	CTAG	2 cut(s)	23, 332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.