Prupe.1G544600_v2.0.a1

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Forward (+)
44500267 .. 44501881
1615 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G544600.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 216 bp
ATGCAAAGCTTTTGCAGCTCTTCTTCTTACAATTATTACCCTCTGGAGGTCTCTGGAGTTAACACTTTCCATGAAGCTCAGAACCTCACAATCTCACCCGATCTCTCTCTAACCCCACTGCTCAGTTGGCTTCGAGGCGGCCCTGGTCGCTCTTCCAGGATCGGCAACTTCTTCGAGCTCATGTATTGCTTCGAAGCCAAAAGAAAACCCAAGTGA

Protein Analysis

72

Amino Acids

8.06

Weight (kDa)

8.71

Isoelectric Point (pI)

52.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 138
AclWI GGATC 1 cut(s) 167
AfiI CCNNNNNNNGG 1 cut(s) 46
AjnI CCWGG 2 cut(s) 142, 155
AluBI AGCT 4 cut(s) 9, 18, 77, 178
AluI AGCT 4 cut(s) 9, 18, 77, 178
Alw21I GWGCWC 1 cut(s) 180
Alw26I GTCTC 1 cut(s) 55
AlwI GGATC 1 cut(s) 167
AoxI GGCC 1 cut(s) 139
ApeKI GCWGC 1 cut(s) 15
AspS9I GGNCC 1 cut(s) 140
AsuHPI GGTGA 1 cut(s) 87
AsuII TTCGAA 1 cut(s) 192
BanII GRGCYC 1 cut(s) 180
Bbv12I GWGCWC 1 cut(s) 180
BbvI GCAGC 1 cut(s) 27
BcgI CGANNNNNNTGC 2 cut(s) 154, 188
BciT130I CCWGG 2 cut(s) 144, 157
BcoDI GTCTC 1 cut(s) 55
BisI GCNGC 2 cut(s) 16, 139
BlsI GCNGC 2 cut(s) 17, 140
Bme1390I CCNGG 2 cut(s) 144, 157
BmgT120I GGNCC 1 cut(s) 140
BmrFI CCNGG 2 cut(s) 144, 157
BpmI CTGGAG 2 cut(s) 65, 75
Bpu14I TTCGAA 1 cut(s) 192
BsaI GGTCTC 1 cut(s) 55
BsaJI CCNNGG 1 cut(s) 142
Bsc4I CCNNNNNNNGG 1 cut(s) 46
BseBI CCWGG 2 cut(s) 144, 157
BseDI CCNNGG 1 cut(s) 142
BseLI CCNNNNNNNGG 1 cut(s) 46
BseMII CTCAG 2 cut(s) 92, 136
BseXI GCAGC 1 cut(s) 27
BshFI GGCC 1 cut(s) 141
BsiHKAI GWGCWC 1 cut(s) 180
BslI CCNNNNNNNGG 1 cut(s) 46
BsmAI GTCTC 1 cut(s) 55
BsnI GGCC 1 cut(s) 141
Bso31I GGTCTC 1 cut(s) 55
Bsp119I TTCGAA 1 cut(s) 192
Bsp1286I GDGCHC 1 cut(s) 180
Bsp143I GATC 2 cut(s) 100, 159
BspACI CCGC 1 cut(s) 138
BspANI GGCC 1 cut(s) 141
BspCNI CTCAG 2 cut(s) 91, 135
BspPI GGATC 1 cut(s) 167
BspQI GCTCTTC 2 cut(s) 25, 157
BspT104I TTCGAA 1 cut(s) 192
BspTNI GGTCTC 1 cut(s) 55
BssECI CCNNGG 1 cut(s) 142
BssMI GATC 2 cut(s) 100, 159
Bst2UI CCWGG 2 cut(s) 144, 157
Bst6I CTCTTC 2 cut(s) 25, 157
BstBI TTCGAA 1 cut(s) 192
BstDEI CTNAG 2 cut(s) 78, 122
BstKTI GATC 2 cut(s) 103, 162
BstMAI GTCTC 1 cut(s) 55
BstMBI GATC 2 cut(s) 100, 159
BstMWI GCNNNNNNNGC 3 cut(s) 15, 127, 147
BstNI CCWGG 2 cut(s) 144, 157
BstSCI CCNGG 2 cut(s) 142, 155
BstV1I GCAGC 1 cut(s) 27
BsuRI GGCC 1 cut(s) 141
BtsI GCAGTG 1 cut(s) 116
BtsIMutI CAGTG 1 cut(s) 116
Cfr13I GGNCC 1 cut(s) 140
CviAII CATG 2 cut(s) 71, 181
CviJI RGCY 7 cut(s) 9, 18, 77, 130, 141, 178, 197
CviKI_1 RGCY 7 cut(s) 9, 18, 77, 130, 141, 178, 197
DdeI CTNAG 2 cut(s) 78, 122
DpnI GATC 2 cut(s) 102, 161
DpnII GATC 2 cut(s) 100, 159
Eam1104I CTCTTC 2 cut(s) 25, 157
EarI CTCTTC 2 cut(s) 25, 157
Ecl136II GAGCTC 1 cut(s) 178
Eco24I GRGCYC 1 cut(s) 180
Eco31I GGTCTC 1 cut(s) 55
Eco53kI GAGCTC 1 cut(s) 178
EcoICRI GAGCTC 1 cut(s) 178
EcoRII CCWGG 2 cut(s) 142, 155
EcoT38I GRGCYC 1 cut(s) 180
FaeI CATG 2 cut(s) 74, 184
FaiI YATR 2 cut(s) 72, 182
FatI CATG 2 cut(s) 70, 180
Fnu4HI GCNGC 2 cut(s) 16, 139
FriOI GRGCYC 1 cut(s) 180
Fsp4HI GCNGC 2 cut(s) 16, 139
GluI GCNGC 2 cut(s) 16, 139
GsuI CTGGAG 2 cut(s) 65, 75
HaeIII GGCC 1 cut(s) 141
Hin1II CATG 2 cut(s) 74, 184
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HindIII AAGCTT 1 cut(s) 7
HpaI GTTAAC 1 cut(s) 61
HphI GGTGA 1 cut(s) 87
Hpy166II GTNNAC 1 cut(s) 61
Hpy188I TCNGA 1 cut(s) 81
Hpy188III TCNNGA 2 cut(s) 44, 54
Hpy8I GTNNAC 1 cut(s) 61
HpyCH4V TGCA 2 cut(s) 4, 15
HpyF10VI GCNNNNNNNGC 3 cut(s) 15, 127, 147
HpyF3I CTNAG 2 cut(s) 78, 122
Hsp92II CATG 2 cut(s) 74, 184
KspAI GTTAAC 1 cut(s) 61
Kzo9I GATC 2 cut(s) 100, 159
LguI GCTCTTC 2 cut(s) 25, 157
LpnPI CCDG 6 cut(s) 29, 39, 129, 142, 156, 169
Lsp1109I GCAGC 1 cut(s) 27
MalI GATC 2 cut(s) 102, 161
MboI GATC 2 cut(s) 100, 159
MboII GAAGA 4 cut(s) 12, 15, 144, 163
MhlI GDGCHC 1 cut(s) 180
MluCI AATT 1 cut(s) 31
MnlI CCTC 4 cut(s) 40, 51, 95, 128
MseI TTAA 1 cut(s) 60
MspR9I CCNGG 2 cut(s) 144, 157
MvaI CCWGG 2 cut(s) 144, 157
MwoI GCNNNNNNNGC 3 cut(s) 15, 127, 147
NdeII GATC 2 cut(s) 100, 159
NlaIII CATG 2 cut(s) 74, 184
NspV TTCGAA 1 cut(s) 192
PciSI GCTCTTC 2 cut(s) 25, 157
PfoI TCCNGGA 1 cut(s) 155
PkrI GCNGC 2 cut(s) 17, 140
Psp124BI GAGCTC 1 cut(s) 180
Psp6I CCWGG 2 cut(s) 142, 155
PspGI CCWGG 2 cut(s) 142, 155
PspPI GGNCC 1 cut(s) 140
SacI GAGCTC 1 cut(s) 180
SapI GCTCTTC 2 cut(s) 25, 157
SaqAI TTAA 1 cut(s) 60
SatI GCNGC 2 cut(s) 16, 139
Sau3AI GATC 2 cut(s) 100, 159
Sau96I GGNCC 1 cut(s) 140
ScrFI CCNGG 2 cut(s) 144, 157
SduI GDGCHC 1 cut(s) 180
SetI ASST 6 cut(s) 11, 20, 51, 79, 87, 180
SfuI TTCGAA 1 cut(s) 192
Sse9I AATT 1 cut(s) 31
SsiI CCGC 1 cut(s) 138
SstI GAGCTC 1 cut(s) 180
StyD4I CCNGG 2 cut(s) 142, 155
TaqI TCGA 3 cut(s) 133, 174, 192
TasI AATT 1 cut(s) 31
TauI GCSGC 1 cut(s) 141
Tru1I TTAA 1 cut(s) 60
Tru9I TTAA 1 cut(s) 60
TscAI CASTG 1 cut(s) 123
TseI GCWGC 1 cut(s) 15
TspDTI ATGAA 1 cut(s) 87
TspRI CASTG 1 cut(s) 123
XcmI CCANNNNNNNNNTGG 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.