Prupe.1G548500_v2.0.a1

Nucleoside diphosphate kinase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Forward (+)
44857199 .. 44862082
4884 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G548500.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 174 bp
ATGATTTGGGAGGGTAAGAATGTTATCCTAACTGGCCGAAAGATTATTGGTGCCACCAACCCAGCAAAATCTTCCCCTGGAACCGTCCGTGGTGATTATGCAATTGAGATTGTCAATAGTCGCTCCAGGAAGCGTGCAAGTGGTGTACGATGCTCGAACTGTGAACCTTCATAG

Protein Analysis

58

Amino Acids

6.13

Weight (kDa)

10.19

Isoelectric Point (pI)

55.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 50
AcoI YGGCCR 1 cut(s) 34
AfaI GTAC 1 cut(s) 147
AjnI CCWGG 2 cut(s) 76, 125
AoxI GGCC 1 cut(s) 34
AsuHPI GGTGA 1 cut(s) 104
BanI GGYRCC 1 cut(s) 50
BciT130I CCWGG 2 cut(s) 78, 127
Bme1390I CCNGG 2 cut(s) 78, 127
BmiI GGNNCC 2 cut(s) 52, 82
BmrFI CCNGG 2 cut(s) 78, 127
BmsI GCATC 1 cut(s) 140
BpmI CTGGAG 1 cut(s) 109
BsaJI CCNNGG 2 cut(s) 76, 88
Bse1I ACTGG 1 cut(s) 37
BseBI CCWGG 2 cut(s) 78, 127
BseDI CCNNGG 2 cut(s) 76, 88
BseNI ACTGG 1 cut(s) 37
BseYI CCCAGC 1 cut(s) 61
BshFI GGCC 1 cut(s) 36
BshNI GGYRCC 1 cut(s) 50
BsnI GGCC 1 cut(s) 36
BspANI GGCC 1 cut(s) 36
BspLI GGNNCC 2 cut(s) 52, 82
BspT107I GGYRCC 1 cut(s) 50
BsrI ACTGG 1 cut(s) 37
BssECI CCNNGG 2 cut(s) 76, 88
Bst2UI CCWGG 2 cut(s) 78, 127
Bst4CI ACNGT 2 cut(s) 85, 161
BstC8I GCNNGC 1 cut(s) 135
BstDSI CCRYGG 1 cut(s) 88
BstNI CCWGG 2 cut(s) 78, 127
BstSCI CCNGG 2 cut(s) 76, 125
BsuRI GGCC 1 cut(s) 36
BtgI CCRYGG 1 cut(s) 88
Cac8I GCNNGC 1 cut(s) 135
Csp6I GTAC 1 cut(s) 146
CviJI RGCY 1 cut(s) 36
CviKI_1 RGCY 1 cut(s) 36
CviQI GTAC 1 cut(s) 146
EaeI YGGCCR 1 cut(s) 34
EcoRII CCWGG 2 cut(s) 76, 125
FaiI YATR 2 cut(s) 99, 172
GsaI CCCAGC 1 cut(s) 65
GsuI CTGGAG 1 cut(s) 109
HaeIII GGCC 1 cut(s) 36
HphI GGTGA 1 cut(s) 104
Hpy166II GTNNAC 2 cut(s) 146, 164
Hpy8I GTNNAC 2 cut(s) 146, 164
HpyCH4III ACNGT 2 cut(s) 85, 161
HpyCH4V TGCA 2 cut(s) 101, 137
LmnI GCTCC 1 cut(s) 128
LpnPI CCDG 6 cut(s) 18, 63, 75, 90, 112, 139
LweI GCATC 1 cut(s) 140
MboII GAAGA 1 cut(s) 63
MfeI CAATTG 1 cut(s) 102
MluCI AATT 1 cut(s) 102
MnlI CCTC 1 cut(s) 4
MspR9I CCNGG 2 cut(s) 78, 127
MunI CAATTG 1 cut(s) 102
MvaI CCWGG 2 cut(s) 78, 127
NlaIV GGNNCC 2 cut(s) 52, 82
PfoI TCCNGGA 1 cut(s) 125
Psp6I CCWGG 2 cut(s) 76, 125
PspFI CCCAGC 1 cut(s) 61
PspGI CCWGG 2 cut(s) 76, 125
PspN4I GGNNCC 2 cut(s) 52, 82
RsaI GTAC 1 cut(s) 147
RsaNI GTAC 1 cut(s) 146
ScrFI CCNGG 2 cut(s) 78, 127
SetI ASST 1 cut(s) 169
SfaNI GCATC 1 cut(s) 140
Sse9I AATT 1 cut(s) 102
StyD4I CCNGG 2 cut(s) 76, 125
TaaI ACNGT 2 cut(s) 85, 161
TaqI TCGA 1 cut(s) 155
TasI AATT 1 cut(s) 102
TspDTI ATGAA 1 cut(s) 159
TspGWI ACGGA 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.