Prupe.1G550500_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Reverse (-)
44985172 .. 44990068
4897 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G550500.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 312 bp
TCTAGTCTCTGGACACTGGAGCCTCCCCGCACTTCTGAAAACAAAGAGCAAGCCTCTCGACACTTGCATTTTCAGTCCAACCCATTAGAGCCCTCTCTGCTGTGCGCCCTCCATCTTCATCTTTCATTTTCAGTCCCAGCTCCCTCCTTTCAGTCTCTTGCTCGATCACACCCAGCCTATTCTTCTCAACAGAAAGAGGAAAACGCTAGGTTTTCACATTTGAAAAGAAACAGCGGCACCAACCAATTCAAAGATCCAGAAGGAAGAAGGAAGAAGAAAGAAATTTCAAAAGGACCTCTTCTTCTCCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.74

Weight (kDa)

9.91

Isoelectric Point (pI)

65.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 236
AciI CCGC 2 cut(s) 28, 234
AclWI GGATC 1 cut(s) 248
AcsI RAATTY 1 cut(s) 282
AgsI TTSAA 3 cut(s) 223, 250, 288
AluBI AGCT 1 cut(s) 140
AluI AGCT 1 cut(s) 140
Alw26I GTCTC 2 cut(s) 11, 159
AlwI GGATC 1 cut(s) 248
ApoI RAATTY 1 cut(s) 282
AspLEI GCGC 1 cut(s) 107
AspS9I GGNCC 1 cut(s) 293
AvaII GGWCC 1 cut(s) 293
BanI GGYRCC 1 cut(s) 236
BanII GRGCYC 1 cut(s) 93
BccI CCATC 1 cut(s) 120
BcgI CGANNNNNNTGC 2 cut(s) 38, 72
BcoDI GTCTC 2 cut(s) 11, 159
BfaI CTAG 2 cut(s) 3, 207
BisI GCNGC 1 cut(s) 235
BlsI GCNGC 1 cut(s) 236
Bme18I GGWCC 1 cut(s) 293
BmgT120I GGNCC 1 cut(s) 293
BmiI GGNNCC 2 cut(s) 21, 238
BplI GAGNNNNNCTC 2 cut(s) 38, 70
BpmI CTGGAG 1 cut(s) 38
Bse1I ACTGG 1 cut(s) 21
BseNI ACTGG 1 cut(s) 21
BseYI CCCAGC 2 cut(s) 136, 172
BshNI GGYRCC 1 cut(s) 236
BslFI GGGAC 1 cut(s) 119
BsmAI GTCTC 2 cut(s) 11, 159
BsmFI GGGAC 1 cut(s) 119
Bsp1286I GDGCHC 1 cut(s) 93
Bsp143I GATC 2 cut(s) 164, 253
BspACI CCGC 2 cut(s) 28, 234
BspLI GGNNCC 2 cut(s) 21, 238
BspPI GGATC 1 cut(s) 248
BspT107I GGYRCC 1 cut(s) 236
BsrI ACTGG 1 cut(s) 21
BssMI GATC 2 cut(s) 164, 253
Bst6I CTCTTC 1 cut(s) 303
BstC8I GCNNGC 1 cut(s) 51
BstHHI GCGC 1 cut(s) 107
BstKTI GATC 2 cut(s) 167, 256
BstMAI GTCTC 2 cut(s) 11, 159
BstMBI GATC 2 cut(s) 164, 253
BstMWI GCNNNNNNNGC 1 cut(s) 97
BstX2I RGATCY 1 cut(s) 253
BstYI RGATCY 1 cut(s) 253
BtsIMutI CAGTG 2 cut(s) 14, 307
Cac8I GCNNGC 1 cut(s) 51
CfoI GCGC 1 cut(s) 107
Cfr13I GGNCC 1 cut(s) 293
CviJI RGCY 5 cut(s) 22, 53, 91, 140, 176
CviKI_1 RGCY 5 cut(s) 22, 53, 91, 140, 176
DpnI GATC 2 cut(s) 166, 255
DpnII GATC 2 cut(s) 164, 253
Eam1104I CTCTTC 1 cut(s) 303
EarI CTCTTC 1 cut(s) 303
Eco24I GRGCYC 1 cut(s) 93
Eco47I GGWCC 1 cut(s) 293
EcoO109I RGGNCCY 1 cut(s) 293
EcoT38I GRGCYC 1 cut(s) 93
FalI AAGNNNNNCTT 1 cut(s) 282
FaqI GGGAC 1 cut(s) 119
FauI CCCGC 1 cut(s) 35
Fnu4HI GCNGC 1 cut(s) 235
FriOI GRGCYC 1 cut(s) 93
Fsp4HI GCNGC 1 cut(s) 235
FspBI CTAG 2 cut(s) 3, 207
GlaI GCGC 1 cut(s) 106
GluI GCNGC 1 cut(s) 235
GsaI CCCAGC 2 cut(s) 140, 176
GsuI CTGGAG 1 cut(s) 38
HhaI GCGC 1 cut(s) 107
Hin6I GCGC 1 cut(s) 105
HinP1I GCGC 1 cut(s) 105
Hpy188I TCNGA 1 cut(s) 37
Hpy188III TCNNGA 3 cut(s) 10, 57, 257
HpyAV CCTTC 2 cut(s) 254, 261
HpyCH4V TGCA 1 cut(s) 67
HpyF10VI GCNNNNNNNGC 1 cut(s) 97
HspAI GCGC 1 cut(s) 105
Kzo9I GATC 2 cut(s) 164, 253
LmnI GCTCC 2 cut(s) 19, 145
LpnPI CCDG 4 cut(s) 2, 150, 186, 270
MaeI CTAG 2 cut(s) 3, 207
MalI GATC 2 cut(s) 166, 255
MboI GATC 2 cut(s) 164, 253
MboII GAAGA 7 cut(s) 107, 174, 276, 283, 286, 290, 293
MflI RGATCY 1 cut(s) 253
MhlI GDGCHC 1 cut(s) 93
MluCI AATT 2 cut(s) 245, 282
MmeI TCCRAC 1 cut(s) 102
MnlI CCTC 7 cut(s) 33, 64, 103, 119, 154, 190, 306
MspA1I CMGCKG 1 cut(s) 234
MwoI GCNNNNNNNGC 1 cut(s) 97
NdeII GATC 2 cut(s) 164, 253
NlaIV GGNNCC 2 cut(s) 21, 238
PkrI GCNGC 1 cut(s) 236
PpuMI RGGWCCY 1 cut(s) 293
Psp5II RGGWCCY 1 cut(s) 293
PspFI CCCAGC 2 cut(s) 136, 172
PspN4I GGNNCC 2 cut(s) 21, 238
PspPI GGNCC 1 cut(s) 293
PspPPI RGGWCCY 1 cut(s) 293
PsuI RGATCY 1 cut(s) 253
SatI GCNGC 1 cut(s) 235
Sau3AI GATC 2 cut(s) 164, 253
Sau96I GGNCC 1 cut(s) 293
SduI GDGCHC 1 cut(s) 93
SetI ASST 3 cut(s) 142, 212, 298
SinI GGWCC 1 cut(s) 293
Sse9I AATT 2 cut(s) 245, 282
SsiI CCGC 2 cut(s) 28, 234
SspMI CTAG 2 cut(s) 3, 207
TaqI TCGA 2 cut(s) 58, 163
TasI AATT 2 cut(s) 245, 282
TauI GCSGC 1 cut(s) 237
TscAI CASTG 1 cut(s) 21
TspDTI ATGAA 2 cut(s) 107, 114
TspRI CASTG 1 cut(s) 21
VpaK11BI GGWCC 1 cut(s) 293
XapI RAATTY 1 cut(s) 282
XspI CTAG 2 cut(s) 3, 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.