Prupe.1G562400_v2.0.a1

GATA zinc finger

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Reverse (-)
45949124 .. 45950984
1861 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G562400.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 357 bp
GTATTTTCCAAATTTGCAGGTGATGATGCAGAACCACACATCTTCAAATCTCATATTCCATCAAAGAAGAGGTCAGAAGTGCCTATATCAGCAATTGAAAGCCTTAGGAGGGACCTCTTGAATGTGCTAAACTCTGTGGAGTTTTCCAACCCATCTGAATCGGCAGAGGATGTGCTCATCTATAATAATGCAAACAACCATCCATCTATAGCTGTTCATGAAATAGGGCTTGGAGCCATTCTTCTCAAACCACCAACTTCTCCTGCAGAGGAGACATCAGAGCCAGTGGACAAGGCTCCTGATGAGGAAGCTGCTACAAGAAACTCATCTAGTGACAAGGAGACAGTAAATAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

119

Amino Acids

12.8

Weight (kDa)

4.9

Isoelectric Point (pI)

71.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 8
Acc36I ACCTGC 1 cut(s) 8
AcsI RAATTY 1 cut(s) 11
AfiI CCNNNNNNNGG 1 cut(s) 109
AgsI TTSAA 3 cut(s) 46, 98, 121
AjuI GAANNNNNNNTTGG 2 cut(s) 213, 245
AluBI AGCT 2 cut(s) 212, 311
AluI AGCT 2 cut(s) 212, 311
Alw21I GWGCWC 1 cut(s) 177
Alw26I GTCTC 2 cut(s) 266, 335
ApeKI GCWGC 1 cut(s) 311
ApoI RAATTY 1 cut(s) 11
ArsI GACNNNNNNTTYG 2 cut(s) 56, 88
AspS9I GGNCC 1 cut(s) 112
AsuHPI GGTGA 1 cut(s) 32
AvaII GGWCC 1 cut(s) 112
AxyI CCTNAGG 1 cut(s) 104
Bbv12I GWGCWC 1 cut(s) 177
BbvI GCAGC 1 cut(s) 298
BccI CCATC 4 cut(s) 67, 160, 207, 211
BcoDI GTCTC 2 cut(s) 266, 335
BfaI CTAG 1 cut(s) 330
BfmI CTRYAG 2 cut(s) 207, 264
BfuAI ACCTGC 1 cut(s) 8
BisI GCNGC 1 cut(s) 312
BlsI GCNGC 1 cut(s) 313
Bme18I GGWCC 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 112
BmiI GGNNCC 3 cut(s) 113, 235, 297
BmsI GCATC 1 cut(s) 16
Bsc4I CCNNNNNNNGG 1 cut(s) 109
Bse1I ACTGG 1 cut(s) 284
Bse21I CCTNAGG 1 cut(s) 104
BseGI GGATG 2 cut(s) 175, 199
BseLI CCNNNNNNNGG 1 cut(s) 109
BseNI ACTGG 1 cut(s) 284
BseRI GAGGAG 1 cut(s) 284
BseXI GCAGC 1 cut(s) 298
BsiHKAI GWGCWC 1 cut(s) 177
BslFI GGGAC 1 cut(s) 125
BslI CCNNNNNNNGG 1 cut(s) 109
BsmAI GTCTC 2 cut(s) 266, 335
BsmFI GGGAC 1 cut(s) 125
Bsp1286I GDGCHC 1 cut(s) 177
BspHI TCATGA 1 cut(s) 217
BspLI GGNNCC 3 cut(s) 113, 235, 297
BspMAI CTGCAG 1 cut(s) 268
BspMI ACCTGC 1 cut(s) 8
BsrI ACTGG 1 cut(s) 284
Bst4CI ACNGT 1 cut(s) 346
Bst6I CTCTTC 1 cut(s) 62
BstDEI CTNAG 1 cut(s) 104
BstF5I GGATG 2 cut(s) 175, 199
BstMAI GTCTC 2 cut(s) 266, 335
BstSFI CTRYAG 2 cut(s) 207, 264
BstV1I GCAGC 1 cut(s) 298
Bsu36I CCTNAGG 1 cut(s) 104
BtsCI GGATG 2 cut(s) 175, 199
BtsIMutI CAGTG 1 cut(s) 291
BveI ACCTGC 1 cut(s) 8
CciI TCATGA 1 cut(s) 217
Cfr13I GGNCC 1 cut(s) 112
CviAII CATG 1 cut(s) 218
CviJI RGCY 7 cut(s) 102, 212, 229, 236, 283, 296, 311
CviKI_1 RGCY 7 cut(s) 102, 212, 229, 236, 283, 296, 311
DdeI CTNAG 1 cut(s) 104
Eam1104I CTCTTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 62
Eco47I GGWCC 1 cut(s) 112
Eco81I CCTNAGG 1 cut(s) 104
EcoO109I RGGNCCY 1 cut(s) 112
FaeI CATG 1 cut(s) 221
FaiI YATR 5 cut(s) 54, 86, 183, 209, 219
FaqI GGGAC 1 cut(s) 125
FatI CATG 1 cut(s) 217
Fnu4HI GCNGC 1 cut(s) 312
FokI GGATG 2 cut(s) 182, 186
Fsp4HI GCNGC 1 cut(s) 312
FspBI CTAG 1 cut(s) 330
GluI GCNGC 1 cut(s) 312
Hin1II CATG 1 cut(s) 221
HinfI GANTC 1 cut(s) 158
HphI GGTGA 1 cut(s) 32
Hpy166II GTNNAC 1 cut(s) 289
Hpy188I TCNGA 3 cut(s) 76, 157, 280
Hpy188III TCNNGA 3 cut(s) 118, 218, 299
Hpy8I GTNNAC 1 cut(s) 289
HpyCH4III ACNGT 1 cut(s) 346
HpyCH4V TGCA 4 cut(s) 17, 29, 191, 266
HpyF3I CTNAG 1 cut(s) 104
Hsp92II CATG 1 cut(s) 221
LmnI GCTCC 2 cut(s) 233, 301
LpnPI CCDG 4 cut(s) 3, 276, 297, 312
Lsp1109I GCAGC 1 cut(s) 298
LweI GCATC 1 cut(s) 16
MaeI CTAG 1 cut(s) 330
MaeIII GTNAC 1 cut(s) 332
MboII GAAGA 3 cut(s) 34, 79, 233
MfeI CAATTG 1 cut(s) 93
MhlI GDGCHC 1 cut(s) 177
MluCI AATT 2 cut(s) 11, 93
MmeI TCCRAC 1 cut(s) 171
MnlI CCTC 6 cut(s) 63, 102, 125, 160, 262, 298
MunI CAATTG 1 cut(s) 93
NlaIII CATG 1 cut(s) 221
NlaIV GGNNCC 3 cut(s) 113, 235, 297
NmuCI GTSAC 1 cut(s) 332
PagI TCATGA 1 cut(s) 217
PaqCI CACCTGC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 158
PkrI GCNGC 1 cut(s) 313
PpuMI RGGWCCY 1 cut(s) 112
Psp5II RGGWCCY 1 cut(s) 112
PspN4I GGNNCC 3 cut(s) 113, 235, 297
PspPI GGNCC 1 cut(s) 112
PspPPI RGGWCCY 1 cut(s) 112
PstI CTGCAG 1 cut(s) 268
SatI GCNGC 1 cut(s) 312
Sau96I GGNCC 1 cut(s) 112
SduI GDGCHC 1 cut(s) 177
SetI ASST 5 cut(s) 22, 74, 117, 214, 313
SfaNI GCATC 1 cut(s) 16
SfcI CTRYAG 2 cut(s) 207, 264
SinI GGWCC 1 cut(s) 112
Sse9I AATT 2 cut(s) 11, 93
SspMI CTAG 1 cut(s) 330
TaaI ACNGT 1 cut(s) 346
TasI AATT 2 cut(s) 11, 93
TfiI GAWTC 1 cut(s) 158
TscAI CASTG 1 cut(s) 291
TseFI GTSAC 1 cut(s) 332
TseI GCWGC 1 cut(s) 311
Tsp45I GTSAC 1 cut(s) 332
TspDTI ATGAA 2 cut(s) 206, 234
TspRI CASTG 1 cut(s) 291
VpaK11BI GGWCC 1 cut(s) 112
XapI RAATTY 1 cut(s) 11
XspI CTAG 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.