Prupe.1G563300_v2.0.a1

cellular manganese ion homeostasis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Reverse (-)
46023567 .. 46024172
606 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G563300.1_v2.0.a1.CDS.4

Sequence Viewer

Length: 384 bp
ATGGCTACCTCTGCAACTCATGAGAAAAGAGCAATTTTGGGAGCCAACGATGGATTGGTCTCTATTGCTTCGGTGATGATGGGTGTAGGGGCAGTCAAAAGAGATATCAAAGCCATGCTGCTTGCTGGATTCGCCGGCTTAGTTGCCGGGAGGAGAAAGCTGCCGAGTCCATTTCAAGAGAGCGTGGCGTCTGCGTTTTTGTTTTTGGTAGGTGGATTAGTCCCACTAATGGCAGCCGAGTTCGTCACCGATTACAAGTTGATGGTTATTGTGCTGGTTTCAGTGTCTAGCAAAACTTCTGCCGCAAGGTCTTGTAGTAGGATGTTGCTTGGAGGGTGGATGGCCATGGCCATTACTTATGCATGTTGGCGAGTCCTTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000041 GO:0000302 GO:0000322 GO:0000323 GO:0000324 GO:0000329 GO:0003674 GO:0005215 GO:0005381 GO:0005384 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006828 GO:0006873 GO:0006874 GO:0006875 GO:0006879 GO:0006880 GO:0006950 GO:0006979 GO:0008150 GO:0008324 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0012505 GO:0015075 GO:0015093 GO:0015318 GO:0015684 GO:0016020 GO:0016021 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030026 GO:0031090 GO:0031224 GO:0032870 GO:0033554 GO:0034220 GO:0034599 GO:0034614 GO:0034755 GO:0035690 GO:0042221 GO:0042493 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0051716 GO:0055065 GO:0055071 GO:0055072 GO:0055074 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070838 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071421 GO:0071495 GO:0071731 GO:0071732 GO:0072503 GO:0072507 GO:0072509 GO:0072511 GO:0097366 GO:0097577 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805 GO:0098852 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170 GO:1903874
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VIT1

Protein Analysis

128

Amino Acids

13.37

Weight (kDa)

10.02

Isoelectric Point (pI)

52.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 303
AcoI YGGCCR 2 cut(s) 342, 348
AcyI GRCGYC 1 cut(s) 188
AfiI CCNNNNNNNGG 1 cut(s) 229
AgsI TTSAA 1 cut(s) 176
AluBI AGCT 1 cut(s) 160
AluI AGCT 1 cut(s) 160
Alw26I GTCTC 1 cut(s) 64
AoxI GGCC 2 cut(s) 342, 348
ApeKI GCWGC 3 cut(s) 118, 160, 233
AsuC2I CCSGG 1 cut(s) 148
AsuHPI GGTGA 2 cut(s) 85, 238
BalI TGGCCA 2 cut(s) 344, 350
BbvI GCAGC 3 cut(s) 105, 147, 245
BccI CCATC 4 cut(s) 44, 73, 256, 334
BcnI CCSGG 1 cut(s) 148
BcoDI GTCTC 1 cut(s) 64
BfaI CTAG 1 cut(s) 288
BisI GCNGC 4 cut(s) 119, 161, 234, 303
BlsI GCNGC 4 cut(s) 120, 162, 235, 304
Bme1390I CCNGG 1 cut(s) 148
BmiI GGNNCC 1 cut(s) 43
BmrFI CCNGG 1 cut(s) 148
BpuMI CCSGG 1 cut(s) 148
BsaHI GRCGYC 1 cut(s) 188
BsaI GGTCTC 1 cut(s) 64
BsaJI CCNNGG 1 cut(s) 345
Bsc4I CCNNNNNNNGG 1 cut(s) 229
Bse118I RCCGGY 1 cut(s) 134
BseDI CCNNGG 1 cut(s) 345
BseGI GGATG 2 cut(s) 327, 345
BseLI CCNNNNNNNGG 1 cut(s) 229
BseRI GAGGAG 1 cut(s) 166
BseXI GCAGC 3 cut(s) 105, 147, 245
BshFI GGCC 2 cut(s) 344, 350
BsiSI CCGG 2 cut(s) 135, 147
BslFI GGGAC 1 cut(s) 206
BslI CCNNNNNNNGG 1 cut(s) 229
BsmAI GTCTC 1 cut(s) 64
BsmFI GGGAC 1 cut(s) 206
BsnI GGCC 2 cut(s) 344, 350
Bso31I GGTCTC 1 cut(s) 64
Bsp19I CCATGG 1 cut(s) 345
BspACI CCGC 1 cut(s) 303
BspANI GGCC 2 cut(s) 344, 350
BspHI TCATGA 1 cut(s) 19
BspLI GGNNCC 1 cut(s) 43
BspTNI GGTCTC 1 cut(s) 64
BsrFI RCCGGY 1 cut(s) 134
BssAI RCCGGY 1 cut(s) 134
BssECI CCNNGG 1 cut(s) 345
BssNI GRCGYC 1 cut(s) 188
BssT1I CCWWGG 1 cut(s) 345
BstACI GRCGYC 1 cut(s) 188
BstC8I GCNNGC 2 cut(s) 123, 136
BstDEI CTNAG 2 cut(s) 139, 377
BstDSI CCRYGG 1 cut(s) 345
BstF5I GGATG 2 cut(s) 327, 345
BstMAI GTCTC 1 cut(s) 64
BstMWI GCNNNNNNNGC 2 cut(s) 11, 131
BstNSI RCATGY 1 cut(s) 366
BstSCI CCNGG 1 cut(s) 146
BstV1I GCAGC 3 cut(s) 105, 147, 245
BsuRI GGCC 2 cut(s) 344, 350
BtgI CCRYGG 1 cut(s) 345
BtsCI GGATG 2 cut(s) 327, 345
BtsIMutI CAGTG 1 cut(s) 288
Cac8I GCNNGC 2 cut(s) 123, 136
CciI TCATGA 1 cut(s) 19
Cfr10I RCCGGY 1 cut(s) 134
CseI GACGC 1 cut(s) 177
CviAII CATG 4 cut(s) 20, 115, 346, 363
CviJI RGCY 8 cut(s) 5, 44, 113, 138, 160, 236, 344, 350
CviKI_1 RGCY 8 cut(s) 5, 44, 113, 138, 160, 236, 344, 350
DdeI CTNAG 2 cut(s) 139, 377
EaeI YGGCCR 2 cut(s) 342, 348
Eco130I CCWWGG 1 cut(s) 345
Eco31I GGTCTC 1 cut(s) 64
Eco32I GATATC 1 cut(s) 106
EcoRV GATATC 1 cut(s) 106
EcoT14I CCWWGG 1 cut(s) 345
EcoT22I ATGCAT 1 cut(s) 364
ErhI CCWWGG 1 cut(s) 345
FaeI CATG 4 cut(s) 23, 118, 349, 366
FaiI YATR 5 cut(s) 21, 116, 347, 360, 364
FaqI GGGAC 1 cut(s) 206
FatI CATG 4 cut(s) 19, 114, 345, 362
Fnu4HI GCNGC 4 cut(s) 119, 161, 234, 303
FokI GGATG 2 cut(s) 334, 352
Fsp4HI GCNGC 4 cut(s) 119, 161, 234, 303
FspBI CTAG 1 cut(s) 288
GluI GCNGC 4 cut(s) 119, 161, 234, 303
HaeIII GGCC 2 cut(s) 344, 350
HapII CCGG 2 cut(s) 135, 147
HgaI GACGC 1 cut(s) 177
Hin1I GRCGYC 1 cut(s) 188
Hin1II CATG 4 cut(s) 23, 118, 349, 366
HinfI GANTC 3 cut(s) 129, 166, 372
HpaII CCGG 2 cut(s) 135, 147
HphI GGTGA 2 cut(s) 85, 238
Hpy188III TCNNGA 2 cut(s) 20, 176
HpyCH4V TGCA 2 cut(s) 14, 362
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 131
HpyF3I CTNAG 2 cut(s) 139, 377
Hsp92I GRCGYC 1 cut(s) 188
Hsp92II CATG 4 cut(s) 23, 118, 349, 366
KroI GCCGGC 1 cut(s) 134
KroNI GCCGGC 1 cut(s) 136
LmnI GCTCC 1 cut(s) 41
LpnPI CCDG 4 cut(s) 111, 148, 160, 260
Lsp1109I GCAGC 3 cut(s) 105, 147, 245
MaeI CTAG 1 cut(s) 288
MaeIII GTNAC 1 cut(s) 244
MlsI TGGCCA 2 cut(s) 344, 350
MluCI AATT 1 cut(s) 33
MluNI TGGCCA 2 cut(s) 344, 350
MlyI GAGTC 2 cut(s) 175, 381
MnlI CCTC 3 cut(s) 19, 144, 326
Mox20I TGGCCA 2 cut(s) 344, 350
Mph1103I ATGCAT 1 cut(s) 364
MroNI GCCGGC 1 cut(s) 134
MscI TGGCCA 2 cut(s) 344, 350
Msp20I TGGCCA 2 cut(s) 344, 350
MspI CCGG 2 cut(s) 135, 147
MspR9I CCNGG 1 cut(s) 148
MwoI GCNNNNNNNGC 2 cut(s) 11, 131
NaeI GCCGGC 1 cut(s) 136
NciI CCSGG 1 cut(s) 148
NcoI CCATGG 1 cut(s) 345
NgoMIV GCCGGC 1 cut(s) 134
NlaIII CATG 4 cut(s) 23, 118, 349, 366
NlaIV GGNNCC 1 cut(s) 43
NmeAIII GCCGAG 2 cut(s) 189, 262
NmuCI GTSAC 1 cut(s) 244
NsiI ATGCAT 1 cut(s) 364
NspI RCATGY 1 cut(s) 366
PagI TCATGA 1 cut(s) 19
PdiI GCCGGC 1 cut(s) 136
PfeI GAWTC 1 cut(s) 129
PkrI GCNGC 4 cut(s) 120, 162, 235, 304
PleI GAGTC 2 cut(s) 174, 380
PpsI GAGTC 2 cut(s) 174, 380
PspN4I GGNNCC 1 cut(s) 43
SatI GCNGC 4 cut(s) 119, 161, 234, 303
SchI GAGTC 2 cut(s) 175, 381
ScrFI CCNGG 1 cut(s) 148
SetI ASST 4 cut(s) 11, 162, 214, 311
Sse9I AATT 1 cut(s) 33
SsiI CCGC 1 cut(s) 303
SspMI CTAG 1 cut(s) 288
StyD4I CCNGG 1 cut(s) 146
StyI CCWWGG 1 cut(s) 345
TasI AATT 1 cut(s) 33
TauI GCSGC 1 cut(s) 305
TfiI GAWTC 1 cut(s) 129
TscAI CASTG 1 cut(s) 288
TseFI GTSAC 1 cut(s) 244
TseI GCWGC 3 cut(s) 118, 160, 233
Tsp45I GTSAC 1 cut(s) 244
TspRI CASTG 1 cut(s) 288
XceI RCATGY 1 cut(s) 366
XcmI CCANNNNNNNNNTGG 1 cut(s) 52
XspI CTAG 1 cut(s) 288
Zsp2I ATGCAT 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.