Prupe.1G566900_v2.0.a1

Thaumatin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0029154
Physical Location & Seq
Reverse (-)
46270712 .. 46272238
1527 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G566900.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 867 bp
ATGGCTTACCATCCCAATGCCCTTCTTGGATCCTTGTTCGTCACCATTCTAATAGCATGCGGGGCTAAGTTATATGCAAGTGCAAAGACCTTCACCATAGTAAATGAGTGCAAGGAGACAATATGGCCTGGCATAACACACAGTGAAAACTTCAGTGGCAGTGGTTTTACATTGAAGCAAGGCCAGTCTACAGTTTATACAGCTCCAGGTGACTGGAATGGTCGAATATGGGCTCGAACCGGCTGCAGTTTTGACAAGAATGGCAATGGCAAATGCCAAACAGGTAGCTGCGGCACCACCATCAACTGTACAGGCCCCGGCAGCCCACCTGCCTCAATTGCCGAATTTACACTCGGCCAGGAGATTGATTACTATGATGTTAGCCTGGTGGATGGATTTAATTTGCCCGTAATTGTTAAACCTACTAACAATGGTAAAGGCAATTGCAGCACTGCTGGTTGTGATAGGGACTTGAGGCAGAGCTGCCCGTCAGAGCTCGCAGCTAAGGCCGAAGGAAAAGTCATTGCTTGCCGGAGTGCATGCAACGTGTTCAACACCGATGAATACTGCTGTAGAGGGACATTTGGAAACCCTCAGACATGTCTACCTACTAATTATTCAAGGAGTTTTAAACAAGCTTGCCCTGCAGCATATAGTTTTGCATATGATGACCCTACCAGTATTATAACATGCTCTGGTGCAGACTTCATTGTCACCTTCTGCGCATCAAGGAACCAAACGGTGTGCTCTTATCATGATAAGCAGCTTGTTTGCAATGGATCAAAGGAATTAAAAGCACTCTCTCAAAGATGGTGGCCATTGATGCTCGCATTCCCCTTGATTCTCAGTTTCCAGTCTATGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

289

Amino Acids

31.11

Weight (kDa)

7.77

Isoelectric Point (pI)

41.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029154)

Species Orthologous Gene IDs
prunus_persica Prupe.1G566900_v2.0.a1 Prupe.1G566900_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 686
AarI CACCTGC 1 cut(s) 337
AasI GACNNNNNNGTC 1 cut(s) 710
Acc16I TGCGCA 1 cut(s) 724
Acc36I ACCTGC 1 cut(s) 337
AccB1I GGYRCC 1 cut(s) 293
AccI GTMKAC 2 cut(s) 188, 604
AciI CCGC 2 cut(s) 60, 291
AclWI GGATC 3 cut(s) 24, 37, 787
AcoI YGGCCR 2 cut(s) 355, 815
AcsI RAATTY 1 cut(s) 344
AcuI CTGAAG 1 cut(s) 136
AdeI CACNNNGTG 1 cut(s) 143
AfaI GTAC 1 cut(s) 310
AflIII ACRYGT 2 cut(s) 546, 599
AgsI TTSAA 3 cut(s) 175, 553, 621
AjnI CCWGG 4 cut(s) 127, 205, 357, 384
AluBI AGCT 7 cut(s) 203, 288, 483, 496, 503, 638, 766
AluI AGCT 7 cut(s) 203, 288, 483, 496, 503, 638, 766
Alw21I GWGCWC 2 cut(s) 498, 749
Alw26I GTCTC 1 cut(s) 110
AlwI GGATC 3 cut(s) 24, 37, 787
AoxI GGCC 6 cut(s) 125, 181, 313, 355, 507, 815
ApeKI GCWGC 8 cut(s) 243, 288, 321, 447, 483, 500, 647, 763
ApoI RAATTY 1 cut(s) 344
ArsI GACNNNNNNTTYG 2 cut(s) 504, 536
AspLEI GCGC 1 cut(s) 725
AspS9I GGNCC 1 cut(s) 314
AsuC2I CCSGG 1 cut(s) 318
AsuHPI GGTGA 4 cut(s) 34, 85, 221, 706
BalI TGGCCA 1 cut(s) 817
BamHI GGATCC 1 cut(s) 29
BanI GGYRCC 1 cut(s) 293
BanII GRGCYC 2 cut(s) 235, 498
Bbv12I GWGCWC 2 cut(s) 498, 749
BbvI GCAGC 8 cut(s) 230, 275, 333, 459, 470, 512, 659, 775
BccI CCATC 4 cut(s) 18, 308, 386, 804
BcgI CGANNNNNNTGC 2 cut(s) 225, 259
BciT130I CCWGG 4 cut(s) 129, 207, 359, 386
BcnI CCSGG 1 cut(s) 318
BcoDI GTCTC 1 cut(s) 110
BfmI CTRYAG 4 cut(s) 189, 244, 571, 645
BfuAI ACCTGC 1 cut(s) 337
BisI GCNGC 9 cut(s) 244, 289, 292, 322, 448, 484, 501, 648, 764
BlsI GCNGC 9 cut(s) 245, 290, 293, 323, 449, 485, 502, 649, 765
Bme1390I CCNGG 5 cut(s) 129, 207, 318, 359, 386
BmgT120I GGNCC 1 cut(s) 314
BmiI GGNNCC 4 cut(s) 31, 295, 316, 734
BmrFI CCNGG 5 cut(s) 129, 207, 318, 359, 386
BmsI GCATC 2 cut(s) 734, 813
BpmI CTGGAG 1 cut(s) 189
Bpu10I CCTNAGC 1 cut(s) 504
BpuEI CTTGAG 1 cut(s) 493
BpuMI CCSGG 1 cut(s) 318
BsaJI CCNNGG 1 cut(s) 316
Bse118I RCCGGY 1 cut(s) 239
Bse1I ACTGG 4 cut(s) 184, 218, 678, 853
Bse3DI GCAATG 3 cut(s) 271, 522, 781
BseBI CCWGG 4 cut(s) 129, 207, 359, 386
BseDI CCNNGG 1 cut(s) 316
BseGI GGATG 2 cut(s) 10, 397
BseMI GCAATG 3 cut(s) 271, 522, 781
BseMII CTCAG 2 cut(s) 608, 859
BseNI ACTGG 4 cut(s) 184, 218, 678, 853
BseXI GCAGC 8 cut(s) 230, 275, 333, 459, 470, 512, 659, 775
BsgI GTGCAG 1 cut(s) 720
BshFI GGCC 6 cut(s) 127, 183, 315, 357, 509, 817
BshNI GGYRCC 1 cut(s) 293
BsiHKAI GWGCWC 2 cut(s) 498, 749
BsiSI CCGG 3 cut(s) 240, 318, 532
BslFI GGGAC 2 cut(s) 482, 592
BsmAI GTCTC 1 cut(s) 110
BsmFI GGGAC 2 cut(s) 482, 592
BsmI GAATGC 1 cut(s) 830
BsnI GGCC 6 cut(s) 127, 183, 315, 357, 509, 817
Bsp1286I GDGCHC 3 cut(s) 235, 498, 749
Bsp1407I TGTACA 1 cut(s) 308
Bsp143I GATC 2 cut(s) 29, 779
BspACI CCGC 2 cut(s) 60, 291
BspANI GGCC 6 cut(s) 127, 183, 315, 357, 509, 817
BspCNI CTCAG 2 cut(s) 607, 858
BspHI TCATGA 1 cut(s) 754
BspLI GGNNCC 4 cut(s) 31, 295, 316, 734
BspMAI CTGCAG 2 cut(s) 248, 649
BspMI ACCTGC 1 cut(s) 337
BspPI GGATC 3 cut(s) 24, 37, 787
BspT107I GGYRCC 1 cut(s) 293
BsrDI GCAATG 3 cut(s) 271, 522, 781
BsrFI RCCGGY 1 cut(s) 239
BsrGI TGTACA 1 cut(s) 308
BsrI ACTGG 4 cut(s) 184, 218, 678, 853
BssAI RCCGGY 1 cut(s) 239
BssECI CCNNGG 1 cut(s) 316
BssMI GATC 2 cut(s) 29, 779
Bst2UI CCWGG 4 cut(s) 129, 207, 359, 386
Bst4CI ACNGT 4 cut(s) 143, 193, 308, 742
BstAUI TGTACA 1 cut(s) 308
BstC8I GCNNGC 6 cut(s) 58, 498, 529, 541, 640, 828
BstDEI CTNAG 4 cut(s) 66, 504, 594, 845
BstF5I GGATG 2 cut(s) 10, 397
BstHHI GCGC 1 cut(s) 725
BstKTI GATC 2 cut(s) 32, 782
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 2 cut(s) 29, 779
BstMWI GCNNNNNNNGC 7 cut(s) 62, 321, 338, 447, 506, 644, 823
BstNI CCWGG 4 cut(s) 129, 207, 359, 386
BstNSI RCATGY 4 cut(s) 60, 543, 603, 693
BstSCI CCNGG 5 cut(s) 127, 205, 316, 357, 384
BstSFI CTRYAG 4 cut(s) 189, 244, 571, 645
BstV1I GCAGC 8 cut(s) 230, 275, 333, 459, 470, 512, 659, 775
BstX2I RGATCY 1 cut(s) 29
BstXI CCANNNNNNTGG 1 cut(s) 213
BstYI RGATCY 1 cut(s) 29
BsuRI GGCC 6 cut(s) 127, 183, 315, 357, 509, 817
BtsCI GGATG 2 cut(s) 10, 397
BtsI GCAGTG 2 cut(s) 166, 450
BtsIMutI CAGTG 4 cut(s) 148, 160, 166, 450
BveI ACCTGC 1 cut(s) 337
Cac8I GCNNGC 6 cut(s) 58, 498, 529, 541, 640, 828
CciI TCATGA 1 cut(s) 754
CfoI GCGC 1 cut(s) 725
Cfr10I RCCGGY 1 cut(s) 239
Cfr13I GGNCC 1 cut(s) 314
Csp6I GTAC 1 cut(s) 309
CspCI CAANNNNNGTGG 2 cut(s) 794, 829
CviAII CATG 5 cut(s) 57, 540, 600, 690, 755
CviQI GTAC 1 cut(s) 309
DdeI CTNAG 4 cut(s) 66, 504, 594, 845
DpnI GATC 2 cut(s) 31, 781
DpnII GATC 2 cut(s) 29, 779
DraI TTTAAA 1 cut(s) 631
DraIII CACNNNGTG 1 cut(s) 143
DrdI GACNNNNNNGTC 1 cut(s) 710
DseDI GACNNNNNNGTC 1 cut(s) 710
EaeI YGGCCR 2 cut(s) 355, 815
Ecl136II GAGCTC 1 cut(s) 496
Eco24I GRGCYC 2 cut(s) 235, 498
Eco53kI GAGCTC 1 cut(s) 496
Eco57I CTGAAG 1 cut(s) 136
EcoICRI GAGCTC 1 cut(s) 496
EcoO109I RGGNCCY 1 cut(s) 314
EcoRII CCWGG 4 cut(s) 127, 205, 357, 384
EcoT38I GRGCYC 2 cut(s) 235, 498
FaeI CATG 5 cut(s) 60, 543, 603, 693, 758
FaqI GGGAC 2 cut(s) 482, 592
FatI CATG 5 cut(s) 56, 539, 599, 689, 754
FauI CCCGC 1 cut(s) 53
FauNDI CATATG 1 cut(s) 664
FblI GTMKAC 2 cut(s) 188, 604
Fnu4HI GCNGC 9 cut(s) 244, 289, 292, 322, 448, 484, 501, 648, 764
FokI GGATG 1 cut(s) 404
FriOI GRGCYC 2 cut(s) 235, 498
Fsp4HI GCNGC 9 cut(s) 244, 289, 292, 322, 448, 484, 501, 648, 764
FspI TGCGCA 1 cut(s) 724
GlaI GCGC 1 cut(s) 724
GluI GCNGC 9 cut(s) 244, 289, 292, 322, 448, 484, 501, 648, 764
GsuI CTGGAG 1 cut(s) 189
HaeIII GGCC 6 cut(s) 127, 183, 315, 357, 509, 817
HapII CCGG 3 cut(s) 240, 318, 532
HhaI GCGC 1 cut(s) 725
Hin1II CATG 5 cut(s) 60, 543, 603, 693, 758
Hin6I GCGC 1 cut(s) 723
HinP1I GCGC 1 cut(s) 723
HindIII AAGCTT 1 cut(s) 636
HinfI GANTC 1 cut(s) 841
HpaII CCGG 3 cut(s) 240, 318, 532
HphI GGTGA 4 cut(s) 34, 85, 221, 706
Hpy166II GTNNAC 2 cut(s) 189, 605
Hpy188I TCNGA 2 cut(s) 493, 597
Hpy188III TCNNGA 1 cut(s) 755
Hpy8I GTNNAC 2 cut(s) 189, 605
HpyAV CCTTC 4 cut(s) 32, 100, 506, 727
HpyCH4III ACNGT 4 cut(s) 143, 193, 308, 742
HpyCH4IV ACGT 1 cut(s) 546
HpyF10VI GCNNNNNNNGC 7 cut(s) 62, 321, 338, 447, 506, 644, 823
HpyF3I CTNAG 4 cut(s) 66, 504, 594, 845
HpySE526I ACGT 1 cut(s) 546
Hsp92II CATG 5 cut(s) 60, 543, 603, 693, 758
HspAI GCGC 1 cut(s) 723
Kzo9I GATC 2 cut(s) 29, 779
LmnI GCTCC 1 cut(s) 208
Lsp1109I GCAGC 8 cut(s) 230, 275, 333, 459, 470, 512, 659, 775
LweI GCATC 2 cut(s) 734, 813
MaeII ACGT 1 cut(s) 546
MaeIII GTNAC 3 cut(s) 40, 209, 712
MalI GATC 2 cut(s) 31, 781
MboI GATC 2 cut(s) 29, 779
MfeI CAATTG 2 cut(s) 336, 442
MflI RGATCY 1 cut(s) 29
MhlI GDGCHC 3 cut(s) 235, 498, 749
MlsI TGGCCA 1 cut(s) 817
MluCI AATT 7 cut(s) 336, 344, 400, 411, 442, 613, 788
MluNI TGGCCA 1 cut(s) 817
MnlI CCTC 4 cut(s) 343, 468, 569, 603
Mox20I TGGCCA 1 cut(s) 817
MscI TGGCCA 1 cut(s) 817
MseI TTAA 4 cut(s) 399, 417, 630, 791
MslI CAYNNNNRTG 1 cut(s) 15
Msp20I TGGCCA 1 cut(s) 817
MspI CCGG 3 cut(s) 240, 318, 532
MspR9I CCNGG 5 cut(s) 129, 207, 318, 359, 386
MunI CAATTG 2 cut(s) 336, 442
Mva1269I GAATGC 1 cut(s) 830
MvaI CCWGG 4 cut(s) 129, 207, 359, 386
MwoI GCNNNNNNNGC 7 cut(s) 62, 321, 338, 447, 506, 644, 823
NciI CCSGG 1 cut(s) 318
NdeI CATATG 1 cut(s) 664
NdeII GATC 2 cut(s) 29, 779
NlaIII CATG 5 cut(s) 60, 543, 603, 693, 758
NlaIV GGNNCC 4 cut(s) 31, 295, 316, 734
NmeAIII GCCGAG 1 cut(s) 333
NmuCI GTSAC 3 cut(s) 40, 209, 712
NsbI TGCGCA 1 cut(s) 724
NspI RCATGY 4 cut(s) 60, 543, 603, 693
PaeI GCATGC 2 cut(s) 60, 543
PagI TCATGA 1 cut(s) 754
PaqCI CACCTGC 1 cut(s) 337
PciI ACATGT 1 cut(s) 599
PctI GAATGC 1 cut(s) 830
PfeI GAWTC 1 cut(s) 841
PkrI GCNGC 9 cut(s) 245, 290, 293, 323, 449, 485, 502, 649, 765
PscI ACATGT 1 cut(s) 599
PsiI TTATAA 1 cut(s) 686
Psp124BI GAGCTC 1 cut(s) 498
Psp6I CCWGG 4 cut(s) 127, 205, 357, 384
PspGI CCWGG 4 cut(s) 127, 205, 357, 384
PspN4I GGNNCC 4 cut(s) 31, 295, 316, 734
PspPI GGNCC 1 cut(s) 314
PstI CTGCAG 2 cut(s) 248, 649
PsuI RGATCY 1 cut(s) 29
RsaI GTAC 1 cut(s) 310
RsaNI GTAC 1 cut(s) 309
RseI CAYNNNNRTG 1 cut(s) 15
SacI GAGCTC 1 cut(s) 498
SaqAI TTAA 4 cut(s) 399, 417, 630, 791
SatI GCNGC 9 cut(s) 244, 289, 292, 322, 448, 484, 501, 648, 764
Sau3AI GATC 2 cut(s) 29, 779
Sau96I GGNCC 1 cut(s) 314
ScrFI CCNGG 5 cut(s) 129, 207, 318, 359, 386
SduI GDGCHC 3 cut(s) 235, 498, 749
SfaNI GCATC 2 cut(s) 734, 813
SfcI CTRYAG 4 cut(s) 189, 244, 571, 645
SmiMI CAYNNNNRTG 1 cut(s) 15
SmlI CTYRAG 1 cut(s) 472
SmoI CTYRAG 1 cut(s) 472
SphI GCATGC 2 cut(s) 60, 543
Sse9I AATT 7 cut(s) 336, 344, 400, 411, 442, 613, 788
SsiI CCGC 2 cut(s) 60, 291
SstI GAGCTC 1 cut(s) 498
StyD4I CCNGG 5 cut(s) 127, 205, 316, 357, 384
TaaI ACNGT 4 cut(s) 143, 193, 308, 742
TaiI ACGT 1 cut(s) 549
TaqI TCGA 2 cut(s) 223, 235
TasI AATT 7 cut(s) 336, 344, 400, 411, 442, 613, 788
TatI WGTACW 1 cut(s) 308
TauI GCSGC 1 cut(s) 294
TfiI GAWTC 1 cut(s) 841
Tru1I TTAA 4 cut(s) 399, 417, 630, 791
Tru9I TTAA 4 cut(s) 399, 417, 630, 791
TscAI CASTG 4 cut(s) 148, 160, 166, 457
TseFI GTSAC 3 cut(s) 40, 209, 712
TseI GCWGC 8 cut(s) 243, 288, 321, 447, 483, 500, 647, 763
Tsp45I GTSAC 3 cut(s) 40, 209, 712
TspDTI ATGAA 2 cut(s) 576, 697
TspRI CASTG 4 cut(s) 148, 160, 166, 457
XapI RAATTY 1 cut(s) 344
XceI RCATGY 4 cut(s) 60, 543, 603, 693
XmiI GTMKAC 2 cut(s) 188, 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.