Prupe.1G569100_v2.0.a1

Ribosomal RNA small subunit methyltransferase NEP1-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Reverse (-)
46392970 .. 46393185
216 bp
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UTR
Exon/CDS
Intron
Prupe.1G569100.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 216 bp
ATGGTTATGTCTCTTGTTTGTTCTAGGACTGAAAATAGAAAAATGAAGAGACATGCCTTAAGGCCATGCTCAGGGCGTAATTCGAATTCTAGATTTGGAGGGATCAAACAAGGTGAAGATGAACAGAATAATGAAGATTCTATGTACCAACTTCTTGGGATTCCACCTACTCTTTCCAATCAGAACATGAACCGTGGAGTTACTTTTGTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

72

Amino Acids

8.04

Weight (kDa)

9.69

Isoelectric Point (pI)

57.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 110
AcsI RAATTY 1 cut(s) 85
AfaI GTAC 1 cut(s) 146
AfiI CCNNNNNNNGG 1 cut(s) 71
AflII CTTAAG 1 cut(s) 58
Alw26I GTCTC 2 cut(s) 15, 43
AlwI GGATC 1 cut(s) 110
AoxI GGCC 1 cut(s) 62
ApoI RAATTY 1 cut(s) 85
AsuHPI GGTGA 1 cut(s) 125
AsuII TTCGAA 1 cut(s) 83
BcoDI GTCTC 2 cut(s) 15, 43
BfaI CTAG 2 cut(s) 24, 90
BfrI CTTAAG 1 cut(s) 58
Bpu10I CCTNAGC 1 cut(s) 70
Bpu14I TTCGAA 1 cut(s) 83
BsaJI CCNNGG 1 cut(s) 193
Bsc4I CCNNNNNNNGG 1 cut(s) 71
BseDI CCNNGG 1 cut(s) 193
BseLI CCNNNNNNNGG 1 cut(s) 71
BseMII CTCAG 1 cut(s) 84
BshFI GGCC 1 cut(s) 64
BslI CCNNNNNNNGG 1 cut(s) 71
BsmAI GTCTC 2 cut(s) 15, 43
BsnI GGCC 1 cut(s) 64
Bsp119I TTCGAA 1 cut(s) 83
Bsp143I GATC 1 cut(s) 102
BspANI GGCC 1 cut(s) 64
BspCNI CTCAG 1 cut(s) 83
BspPI GGATC 1 cut(s) 110
BspT104I TTCGAA 1 cut(s) 83
BspTI CTTAAG 1 cut(s) 58
BssECI CCNNGG 1 cut(s) 193
BssMI GATC 1 cut(s) 102
Bst4CI ACNGT 1 cut(s) 194
Bst6I CTCTTC 1 cut(s) 41
BstAFI CTTAAG 1 cut(s) 58
BstBI TTCGAA 1 cut(s) 83
BstDEI CTNAG 1 cut(s) 70
BstDSI CCRYGG 1 cut(s) 193
BstKTI GATC 1 cut(s) 105
BstMAI GTCTC 2 cut(s) 15, 43
BstMBI GATC 1 cut(s) 102
BstNSI RCATGY 1 cut(s) 56
BstXI CCANNNNNNTGG 1 cut(s) 155
BsuRI GGCC 1 cut(s) 64
BtgI CCRYGG 1 cut(s) 193
Csp6I GTAC 1 cut(s) 145
CviAII CATG 3 cut(s) 53, 66, 187
CviJI RGCY 1 cut(s) 64
CviKI_1 RGCY 1 cut(s) 64
CviQI GTAC 1 cut(s) 145
DdeI CTNAG 1 cut(s) 70
DpnI GATC 1 cut(s) 104
DpnII GATC 1 cut(s) 102
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
EcoRI GAATTC 1 cut(s) 85
FaeI CATG 3 cut(s) 56, 69, 190
FaiI YATR 5 cut(s) 8, 54, 67, 143, 188
FatI CATG 3 cut(s) 52, 65, 186
FspBI CTAG 2 cut(s) 24, 90
HaeIII GGCC 1 cut(s) 64
Hin1II CATG 3 cut(s) 56, 69, 190
HinfI GANTC 2 cut(s) 137, 160
HphI GGTGA 1 cut(s) 125
Hpy188I TCNGA 1 cut(s) 183
Hpy188III TCNNGA 1 cut(s) 90
HpyCH4III ACNGT 1 cut(s) 194
HpyF3I CTNAG 1 cut(s) 70
Hsp92II CATG 3 cut(s) 56, 69, 190
Kzo9I GATC 1 cut(s) 102
LpnPI CCDG 1 cut(s) 57
MaeI CTAG 2 cut(s) 24, 90
MaeIII GTNAC 1 cut(s) 199
MalI GATC 1 cut(s) 104
MboI GATC 1 cut(s) 102
MboII GAAGA 3 cut(s) 58, 128, 146
MluCI AATT 2 cut(s) 79, 85
MnlI CCTC 1 cut(s) 92
MseI TTAA 1 cut(s) 59
MspCI CTTAAG 1 cut(s) 58
NdeII GATC 1 cut(s) 102
NlaIII CATG 3 cut(s) 56, 69, 190
NspI RCATGY 1 cut(s) 56
NspV TTCGAA 1 cut(s) 83
PfeI GAWTC 2 cut(s) 137, 160
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
SaqAI TTAA 1 cut(s) 59
Sau3AI GATC 1 cut(s) 102
SetI ASST 2 cut(s) 115, 169
SfuI TTCGAA 1 cut(s) 83
SmlI CTYRAG 1 cut(s) 58
SmoI CTYRAG 1 cut(s) 58
Sse9I AATT 2 cut(s) 79, 85
SspMI CTAG 2 cut(s) 24, 90
TaaI ACNGT 1 cut(s) 194
TaqI TCGA 1 cut(s) 83
TasI AATT 2 cut(s) 79, 85
TfiI GAWTC 2 cut(s) 137, 160
Tru1I TTAA 1 cut(s) 59
Tru9I TTAA 1 cut(s) 59
TspDTI ATGAA 4 cut(s) 59, 135, 147, 203
Vha464I CTTAAG 1 cut(s) 58
XapI RAATTY 1 cut(s) 85
XbaI TCTAGA 1 cut(s) 89
XceI RCATGY 1 cut(s) 56
XspI CTAG 2 cut(s) 24, 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.