Prupe.1G572300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Forward (+)
46660431 .. 46662036
1606 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G572300.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 972 bp
ATGATGGATCCTTCATGCACCTCAACTTCTGTCAGTGGCTTCTACAACTTTCTCACTCATGAACTCAACAATCTTGATCAATCTTTCCTCTCCCATAGTTTCATGTCAATCCAATTCCTTCAGAAGGTACTCTCATCTCTCAAGTCCTTCCATTCTCAGTTGACCACTTTGGTTCAAAAGCTTCACTTACCCATAGGAGAGAAGTGGCTCGATGAGTACATGGATGAAAGCTCCAGGCTCTGGGAAGCTTGCAATGTTCTTAAATTAGGAGTCTCTTGCATGGAAAATGTTTTCGCAGCTGGAGCCAATGTCCTGTCCTCCACAGATGAGTTCCACTACTACTTGAATGAACAAACTTCTAACCAGGTTATCCGGGCAGTAAGTGCATACCAAATGGAAATTATTGGTTTGGAACATGATAATAAGGCCTTGATGGAAACAAGAGTTGAGCAGCTATCACTACGCATCAATGAAAACATTGTCTCAATGGGGTCCAAGTTCAATGGGTTCAGTGGCTTTCGTGGCGTCATGTATGCAATGAGGAACGTTAGCTCATTGCTTTTGATGATCCTGCTAAGCGGGATTGTATATTATTTGCCAGGATCAAGTTTTCAAGAGGAAGGAGGGCTGGAAGGCAGTGTGATATTTGGCTCAAATTTCATGGTTTCAGTAGCGAGATTGCAGCGAAGAGTGGCGAATGTGTTCGAGCAGATCCCAGGGCCGCCTCATGGATTGCTTCTTCATGAGTTCCGGGAAACGAAATCTTTGATGGAGGAGGTGAGAGGTGAGTTGGAGAGAATGGTGGAGCATGAAGCAGAGATTCATGATATCCAAGATAGTGTCGACAAGTTGAAAAGTTGCTTTGGGTTGTTGAGAAGTGGGGTTGAGGCTATAATTGAGCAGCTTGATGACTTCTTTGATGAAATAGTGGAGGGAAGGAAGAAGCTTTTGGACATGTGCACTCATAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BPS1

Protein Analysis

324

Amino Acids

36.65

Weight (kDa)

5.12

Isoelectric Point (pI)

45.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 240
AccI GTMKAC 1 cut(s) 843
AciI CCGC 2 cut(s) 579, 722
AclI AACGTT 1 cut(s) 546
AclWI GGATC 5 cut(s) 2, 15, 562, 610, 706
AcsI RAATTY 1 cut(s) 655
AcuI CTGAAG 1 cut(s) 104
AcyI GRCGYC 1 cut(s) 525
AfaI GTAC 2 cut(s) 129, 218
AfiI CCNNNNNNNGG 3 cut(s) 124, 240, 728
AflIII ACRYGT 1 cut(s) 954
AgsI TTSAA 5 cut(s) 176, 346, 502, 614, 853
AjnI CCWGG 4 cut(s) 233, 363, 598, 715
AjuI GAANNNNNNNTTGG 2 cut(s) 932, 964
AluBI AGCT 8 cut(s) 181, 231, 248, 299, 454, 552, 904, 946
AluI AGCT 8 cut(s) 181, 231, 248, 299, 454, 552, 904, 946
Alw21I GWGCWC 1 cut(s) 962
Alw26I GTCTC 2 cut(s) 277, 487
Alw44I GTGCAC 1 cut(s) 958
AlwI GGATC 5 cut(s) 2, 15, 562, 610, 706
AlwNI CAGNNNCTG 1 cut(s) 240
AoxI GGCC 2 cut(s) 426, 719
ApaLI GTGCAC 1 cut(s) 958
ApeKI GCWGC 4 cut(s) 296, 451, 682, 901
ApoI RAATTY 1 cut(s) 655
Asp700I GAANNNNTTC 1 cut(s) 701
AspS9I GGNCC 2 cut(s) 492, 719
AsuC2I CCSGG 2 cut(s) 374, 752
AsuHPI GGTGA 2 cut(s) 790, 797
AvaII GGWCC 1 cut(s) 492
BaeGI GKGCMC 1 cut(s) 962
BamHI GGATCC 1 cut(s) 7
Bbv12I GWGCWC 1 cut(s) 962
BbvI GCAGC 4 cut(s) 308, 463, 694, 913
BccI CCATC 2 cut(s) 427, 763
BciT130I CCWGG 4 cut(s) 235, 365, 600, 717
BclI TGATCA 1 cut(s) 76
BcnI CCSGG 2 cut(s) 374, 752
BcoDI GTCTC 2 cut(s) 277, 487
BisI GCNGC 5 cut(s) 297, 452, 683, 722, 902
BlpI GCTNAGC 1 cut(s) 575
BlsI GCNGC 5 cut(s) 298, 453, 684, 723, 903
Bme1390I CCNGG 6 cut(s) 235, 365, 374, 600, 717, 752
Bme18I GGWCC 1 cut(s) 492
BmgT120I GGNCC 2 cut(s) 492, 719
BmiI GGNNCC 3 cut(s) 9, 304, 493
BmrFI CCNGG 6 cut(s) 235, 365, 374, 600, 717, 752
BmsI GCATC 1 cut(s) 474
BpmI CTGGAG 2 cut(s) 217, 321
Bpu1102I GCTNAGC 1 cut(s) 575
BpuEI CTTGAG 1 cut(s) 125
BpuMI CCSGG 2 cut(s) 374, 752
BsaHI GRCGYC 1 cut(s) 525
BsaJI CCNNGG 2 cut(s) 715, 716
BsaXI ACNNNNNCTCC 2 cut(s) 294, 324
Bsc4I CCNNNNNNNGG 3 cut(s) 124, 240, 728
Bse3DI GCAATG 3 cut(s) 259, 543, 554
BseBI CCWGG 4 cut(s) 235, 365, 600, 717
BseDI CCNNGG 2 cut(s) 715, 716
BseGI GGATG 1 cut(s) 229
BseLI CCNNNNNNNGG 3 cut(s) 124, 240, 728
BseMI GCAATG 3 cut(s) 259, 543, 554
BseMII CTCAG 1 cut(s) 170
BseRI GAGGAG 1 cut(s) 788
BseSI GKGCMC 1 cut(s) 962
BseXI GCAGC 4 cut(s) 308, 463, 694, 913
BshFI GGCC 2 cut(s) 428, 721
BsiHKAI GWGCWC 1 cut(s) 962
BsiSI CCGG 2 cut(s) 373, 751
BslI CCNNNNNNNGG 3 cut(s) 124, 240, 728
BsmAI GTCTC 2 cut(s) 277, 487
BsnI GGCC 2 cut(s) 428, 721
Bsp1286I GDGCHC 1 cut(s) 962
Bsp143I GATC 5 cut(s) 7, 76, 567, 602, 711
Bsp1720I GCTNAGC 1 cut(s) 575
BspACI CCGC 2 cut(s) 579, 722
BspANI GGCC 2 cut(s) 428, 721
BspCNI CTCAG 1 cut(s) 169
BspHI TCATGA 3 cut(s) 58, 742, 823
BspLI GGNNCC 3 cut(s) 9, 304, 493
BspPI GGATC 5 cut(s) 2, 15, 562, 610, 706
BsrDI GCAATG 3 cut(s) 259, 543, 554
BssECI CCNNGG 2 cut(s) 715, 716
BssMI GATC 5 cut(s) 7, 76, 567, 602, 711
BssNI GRCGYC 1 cut(s) 525
Bst2UI CCWGG 4 cut(s) 235, 365, 600, 717
Bst6I CTCTTC 1 cut(s) 682
BstACI GRCGYC 1 cut(s) 525
BstAPI GCANNNNNTGC 1 cut(s) 383
BstC8I GCNNGC 1 cut(s) 250
BstDEI CTNAG 2 cut(s) 156, 575
BstENI CCTNNNNNAGG 1 cut(s) 122
BstF5I GGATG 1 cut(s) 229
BstKTI GATC 5 cut(s) 10, 79, 570, 605, 714
BstMAI GTCTC 2 cut(s) 277, 487
BstMBI GATC 5 cut(s) 7, 76, 567, 602, 711
BstMWI GCNNNNNNNGC 3 cut(s) 302, 383, 522
BstNI CCWGG 4 cut(s) 235, 365, 600, 717
BstNSI RCATGY 1 cut(s) 958
BstSCI CCNGG 6 cut(s) 233, 363, 372, 598, 715, 750
BstSLI GKGCMC 1 cut(s) 962
BstV1I GCAGC 4 cut(s) 308, 463, 694, 913
BstX2I RGATCY 2 cut(s) 7, 711
BstYI RGATCY 2 cut(s) 7, 711
BsuRI GGCC 2 cut(s) 428, 721
BtsCI GGATG 1 cut(s) 229
BtsI GCAGTG 1 cut(s) 643
BtsIMutI CAGTG 3 cut(s) 40, 517, 643
Cac8I GCNNGC 1 cut(s) 250
CaiI CAGNNNCTG 1 cut(s) 240
CciI TCATGA 3 cut(s) 58, 742, 823
Cfr13I GGNCC 2 cut(s) 492, 719
CseI GACGC 1 cut(s) 514
CsiI ACCWGGT 1 cut(s) 363
Csp6I GTAC 2 cut(s) 128, 217
CviQI GTAC 2 cut(s) 128, 217
DdeI CTNAG 2 cut(s) 156, 575
DpnI GATC 5 cut(s) 9, 78, 569, 604, 713
DpnII GATC 5 cut(s) 7, 76, 567, 602, 711
Eam1104I CTCTTC 1 cut(s) 682
EarI CTCTTC 1 cut(s) 682
Eco147I AGGCCT 1 cut(s) 428
Eco32I GATATC 1 cut(s) 829
Eco47I GGWCC 1 cut(s) 492
Eco57I CTGAAG 1 cut(s) 104
EcoNI CCTNNNNNAGG 1 cut(s) 122
EcoRII CCWGG 4 cut(s) 233, 363, 598, 715
EcoRV GATATC 1 cut(s) 829
FalI AAGNNNNNCTT 2 cut(s) 170, 202
FauI CCCGC 1 cut(s) 572
FbaI TGATCA 1 cut(s) 76
FblI GTMKAC 1 cut(s) 843
Fnu4HI GCNGC 5 cut(s) 297, 452, 683, 722, 902
FokI GGATG 1 cut(s) 236
Fsp4HI GCNGC 5 cut(s) 297, 452, 683, 722, 902
GluI GCNGC 5 cut(s) 297, 452, 683, 722, 902
GsuI CTGGAG 2 cut(s) 217, 321
HaeIII GGCC 2 cut(s) 428, 721
HapII CCGG 2 cut(s) 373, 751
HgaI GACGC 1 cut(s) 514
Hin1I GRCGYC 1 cut(s) 525
HincII GTYRAC 2 cut(s) 162, 844
HindII GTYRAC 2 cut(s) 162, 844
HindIII AAGCTT 3 cut(s) 179, 246, 944
HinfI GANTC 2 cut(s) 270, 820
HpaII CCGG 2 cut(s) 373, 751
HphI GGTGA 2 cut(s) 790, 797
Hpy166II GTNNAC 3 cut(s) 162, 844, 960
Hpy188I TCNGA 1 cut(s) 123
Hpy188III TCNNGA 5 cut(s) 59, 74, 614, 743, 824
Hpy8I GTNNAC 3 cut(s) 162, 844, 960
HpyAV CCTTC 7 cut(s) 21, 118, 128, 157, 614, 626, 930
HpyCH4IV ACGT 1 cut(s) 546
HpyCH4V TGCA 7 cut(s) 18, 252, 279, 386, 536, 682, 960
HpyF10VI GCNNNNNNNGC 3 cut(s) 302, 383, 522
HpyF3I CTNAG 2 cut(s) 156, 575
HpySE526I ACGT 1 cut(s) 546
Hsp92I GRCGYC 1 cut(s) 525
Ksp22I TGATCA 1 cut(s) 76
Kzo9I GATC 5 cut(s) 7, 76, 567, 602, 711
LmnI GCTCC 3 cut(s) 236, 302, 805
Lsp1109I GCAGC 4 cut(s) 308, 463, 694, 913
LweI GCATC 1 cut(s) 474
MabI ACCWGGT 1 cut(s) 363
MaeII ACGT 1 cut(s) 546
MalI GATC 5 cut(s) 9, 78, 569, 604, 713
MboI GATC 5 cut(s) 7, 76, 567, 602, 711
MboII GAAGA 3 cut(s) 699, 731, 952
MflI RGATCY 2 cut(s) 7, 711
MhlI GDGCHC 1 cut(s) 962
MluCI AATT 5 cut(s) 113, 263, 399, 655, 894
MlyI GAGTC 1 cut(s) 279
MmeI TCCRAC 1 cut(s) 771
MroXI GAANNNNTTC 1 cut(s) 701
MseI TTAA 1 cut(s) 261
MspA1I CMGCKG 1 cut(s) 299
MspI CCGG 2 cut(s) 373, 751
MspR9I CCNGG 6 cut(s) 235, 365, 374, 600, 717, 752
MvaI CCWGG 4 cut(s) 235, 365, 600, 717
MwoI GCNNNNNNNGC 3 cut(s) 302, 383, 522
NciI CCSGG 2 cut(s) 374, 752
NdeII GATC 5 cut(s) 7, 76, 567, 602, 711
NlaIV GGNNCC 3 cut(s) 9, 304, 493
NspI RCATGY 1 cut(s) 958
PagI TCATGA 3 cut(s) 58, 742, 823
PasI CCCWGGG 1 cut(s) 716
PceI AGGCCT 1 cut(s) 428
PciI ACATGT 1 cut(s) 954
PdmI GAANNNNTTC 1 cut(s) 701
PfeI GAWTC 1 cut(s) 820
PflMI CCANNNNNTGG 1 cut(s) 240
PfoI TCCNGGA 1 cut(s) 750
PkrI GCNGC 5 cut(s) 298, 453, 684, 723, 903
PleI GAGTC 1 cut(s) 278
PpsI GAGTC 1 cut(s) 278
PscI ACATGT 1 cut(s) 954
Psp1406I AACGTT 1 cut(s) 546
Psp6I CCWGG 4 cut(s) 233, 363, 598, 715
PspGI CCWGG 4 cut(s) 233, 363, 598, 715
PspN4I GGNNCC 3 cut(s) 9, 304, 493
PspPI GGNCC 2 cut(s) 492, 719
PstNI CAGNNNCTG 1 cut(s) 240
PsuI RGATCY 2 cut(s) 7, 711
PvuII CAGCTG 1 cut(s) 299
RsaI GTAC 2 cut(s) 129, 218
RsaNI GTAC 2 cut(s) 128, 217
SalI GTCGAC 1 cut(s) 842
SaqAI TTAA 1 cut(s) 261
SatI GCNGC 5 cut(s) 297, 452, 683, 722, 902
Sau3AI GATC 5 cut(s) 7, 76, 567, 602, 711
Sau96I GGNCC 2 cut(s) 492, 719
SchI GAGTC 1 cut(s) 279
ScrFI CCNGG 6 cut(s) 235, 365, 374, 600, 717, 752
SduI GDGCHC 1 cut(s) 962
SexAI ACCWGGT 1 cut(s) 363
SfaNI GCATC 1 cut(s) 474
SinI GGWCC 1 cut(s) 492
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
Sse9I AATT 5 cut(s) 113, 263, 399, 655, 894
SseBI AGGCCT 1 cut(s) 428
SsiI CCGC 2 cut(s) 579, 722
StuI AGGCCT 1 cut(s) 428
StyD4I CCNGG 6 cut(s) 233, 363, 372, 598, 715, 750
TaiI ACGT 1 cut(s) 549
TaqI TCGA 3 cut(s) 210, 705, 843
TasI AATT 5 cut(s) 113, 263, 399, 655, 894
TatI WGTACW 1 cut(s) 216
TauI GCSGC 1 cut(s) 724
TfiI GAWTC 1 cut(s) 820
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TscAI CASTG 3 cut(s) 40, 517, 643
TseI GCWGC 4 cut(s) 296, 451, 682, 901
TspRI CASTG 3 cut(s) 40, 517, 643
Van91I CCANNNNNTGG 1 cut(s) 240
VneI GTGCAC 1 cut(s) 958
VpaK11BI GGWCC 1 cut(s) 492
XagI CCTNNNNNAGG 1 cut(s) 122
XapI RAATTY 1 cut(s) 655
XceI RCATGY 1 cut(s) 958
XmiI GTMKAC 1 cut(s) 843
XmnI GAANNNNTTC 1 cut(s) 701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.