Prupe.1G572700_v2.0.a1

Protein prenyltransferase alpha subunit repeat

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Forward (+)
46676695 .. 46679510
2816 bp
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UTR
Exon/CDS
Intron
Prupe.1G572700.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 207 bp
ATGCCCAGGGGTGTCAGTGTGACGAATTATTGGGAAGCTTTTCTGATTTTTTTTTTTTTTTTGATGAAAGCTTTTCTGATTTTTAAAAGCTTGAGGTTGATGCAATTAGACATTGCGGGGAATGCAATTGCTGGTGAAAATTTCAAGTCATTTTTGGTCAAGGTAGTTCCTTCACTTCAGTGGCTGGATGGTGATAAATTGCATTAA

Protein Analysis

69

Amino Acids

7.87

Weight (kDa)

9.3

Isoelectric Point (pI)

9.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 116
AcsI RAATTY 1 cut(s) 139
AcuI CTGAAG 1 cut(s) 161
AgsI TTSAA 1 cut(s) 145
AjnI CCWGG 1 cut(s) 5
AleI CACNNNNGTG 1 cut(s) 178
AluBI AGCT 3 cut(s) 38, 71, 90
AluI AGCT 3 cut(s) 38, 71, 90
AlwNI CAGNNNCTG 1 cut(s) 184
ApoI RAATTY 1 cut(s) 139
Asp700I GAANNNNTTC 1 cut(s) 39
AsuHPI GGTGA 2 cut(s) 146, 203
BccI CCATC 1 cut(s) 182
BciT130I CCWGG 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 7
BmrFI CCNGG 1 cut(s) 7
BmsI GCATC 1 cut(s) 90
BpuEI CTTGAG 1 cut(s) 112
BsaJI CCNNGG 2 cut(s) 5, 6
Bse3DI GCAATG 1 cut(s) 111
BseBI CCWGG 1 cut(s) 7
BseDI CCNNGG 2 cut(s) 5, 6
BseGI GGATG 1 cut(s) 193
BseMI GCAATG 1 cut(s) 111
BsmI GAATGC 1 cut(s) 127
BspACI CCGC 1 cut(s) 116
BsrDI GCAATG 1 cut(s) 111
BssECI CCNNGG 2 cut(s) 5, 6
Bst2UI CCWGG 1 cut(s) 7
BstF5I GGATG 1 cut(s) 193
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstNI CCWGG 1 cut(s) 7
BstSCI CCNGG 1 cut(s) 5
BtsCI GGATG 1 cut(s) 193
BtsIMutI CAGTG 2 cut(s) 22, 185
CaiI CAGNNNCTG 1 cut(s) 184
CviJI RGCY 4 cut(s) 38, 71, 90, 184
CviKI_1 RGCY 4 cut(s) 38, 71, 90, 184
DraI TTTAAA 1 cut(s) 85
Eco57I CTGAAG 1 cut(s) 161
EcoRII CCWGG 1 cut(s) 5
FauI CCCGC 1 cut(s) 109
FokI GGATG 1 cut(s) 200
HindIII AAGCTT 3 cut(s) 36, 69, 88
HphI GGTGA 2 cut(s) 146, 203
Hpy188I TCNGA 2 cut(s) 45, 78
HpyAV CCTTC 1 cut(s) 180
HpyCH4V TGCA 3 cut(s) 103, 125, 202
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
LpnPI CCDG 3 cut(s) 19, 117, 170
LweI GCATC 1 cut(s) 90
MaeIII GTNAC 1 cut(s) 19
MfeI CAATTG 1 cut(s) 126
MluCI AATT 5 cut(s) 25, 104, 126, 139, 197
MnlI CCTC 1 cut(s) 87
MroXI GAANNNNTTC 1 cut(s) 39
MseI TTAA 2 cut(s) 84, 205
MslI CAYNNNNRTG 1 cut(s) 178
MspR9I CCNGG 1 cut(s) 7
MunI CAATTG 1 cut(s) 126
Mva1269I GAATGC 1 cut(s) 127
MvaI CCWGG 1 cut(s) 7
MwoI GCNNNNNNNGC 1 cut(s) 122
NmuCI GTSAC 1 cut(s) 19
OliI CACNNNNGTG 1 cut(s) 178
PasI CCCWGGG 1 cut(s) 6
PctI GAATGC 1 cut(s) 127
PdmI GAANNNNTTC 1 cut(s) 39
Psp6I CCWGG 1 cut(s) 5
PspGI CCWGG 1 cut(s) 5
PstNI CAGNNNCTG 1 cut(s) 184
RseI CAYNNNNRTG 1 cut(s) 178
SaqAI TTAA 2 cut(s) 84, 205
ScrFI CCNGG 1 cut(s) 7
SetI ASST 5 cut(s) 40, 73, 92, 98, 165
SfaNI GCATC 1 cut(s) 90
SgeI CNNG 8 cut(s) 18, 19, 103, 129, 144, 157, 172, 197
SmiMI CAYNNNNRTG 1 cut(s) 178
SmlI CTYRAG 1 cut(s) 91
SmoI CTYRAG 1 cut(s) 91
Sse9I AATT 5 cut(s) 25, 104, 126, 139, 197
SsiI CCGC 1 cut(s) 116
StyD4I CCNGG 1 cut(s) 5
TasI AATT 5 cut(s) 25, 104, 126, 139, 197
Tru1I TTAA 2 cut(s) 84, 205
Tru9I TTAA 2 cut(s) 84, 205
TscAI CASTG 2 cut(s) 22, 185
TseFI GTSAC 1 cut(s) 19
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 1 cut(s) 80
TspRI CASTG 2 cut(s) 22, 185
XapI RAATTY 1 cut(s) 139
XmnI GAANNNNTTC 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.