Prupe.1G578100_v2.0.a1

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Forward (+)
47055848 .. 47058082
2235 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G578100.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 600 bp
ATGCCAAACAGAAGCTTGGACACTCTTCTATTTGATCCAGCGCGGAGACCTGAGCTTGATTGGGGCAGACGCTTCAATATTATTCAGAGAGGGCTTCTTTATCTCCACCGTGATTCTTATTTGAAAGTAATACATAGAGATTTGAAGGTCAGTAATATTCTCTTGGATGAGCAAATGAACCCAAAAATTTCAGCTTTTGGATTGGCACGTATCATTCAAGGGACACAGAATATAACAAATACTCAGAAGGTTGTGGGAACACTTGGCTATATGTCTCCGGAGTATGCCATGGGCGGGATATTTTCTGAAAAATCTGATGTCTATAGCTTCGGAGTCTTGATATTGGAGATTATTAGCAGCATGAAGAATACCAGCTTCTATTACTATGAACAACATCTAGGTTTCCTAGCTTATGTAAGTTCACACTCTAAATCATATAAATTGTTAAACAATCTATATGAAGCTAAATACATACATACATACATACATATATATATATATATATATATGAAATTTTGTCAGGCATGGCACTCATGGAATGAAGGCAGGGGATTGGAGTTGGTTGATGAAATATTGGCAGATTCATATTCCTCATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

200

Amino Acids

23.21

Weight (kDa)

7.82

Isoelectric Point (pI)

51.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 43
AccIII TCCGGA 1 cut(s) 277
AciI CCGC 2 cut(s) 43, 294
AclWI GGATC 1 cut(s) 29
AcsI RAATTY 2 cut(s) 186, 512
AfiI CCNNNNNNNGG 1 cut(s) 294
AgsI TTSAA 4 cut(s) 76, 124, 145, 218
AluBI AGCT 7 cut(s) 15, 55, 194, 327, 375, 410, 464
AluI AGCT 7 cut(s) 15, 55, 194, 327, 375, 410, 464
Alw26I GTCTC 2 cut(s) 40, 279
AlwI GGATC 1 cut(s) 29
Aor13HI TCCGGA 1 cut(s) 277
ApeKI GCWGC 1 cut(s) 357
ApoI RAATTY 2 cut(s) 186, 512
AspLEI GCGC 1 cut(s) 43
BbvI GCAGC 1 cut(s) 369
BcoDI GTCTC 2 cut(s) 40, 279
BfaI CTAG 2 cut(s) 398, 407
BfmI CTRYAG 1 cut(s) 322
BisI GCNGC 1 cut(s) 358
BlsI GCNGC 1 cut(s) 359
Bpu10I CCTNAGC 1 cut(s) 51
BsaAI YACGTR 1 cut(s) 209
BsaI GGTCTC 1 cut(s) 40
BsaJI CCNNGG 1 cut(s) 288
BsaWI WCCGGW 1 cut(s) 277
Bsc4I CCNNNNNNNGG 1 cut(s) 294
BseAI TCCGGA 1 cut(s) 277
BseDI CCNNGG 1 cut(s) 288
BseGI GGATG 1 cut(s) 172
BseLI CCNNNNNNNGG 1 cut(s) 294
BseMII CTCAG 2 cut(s) 42, 257
BseXI GCAGC 1 cut(s) 369
Bsh1236I CGCG 1 cut(s) 43
BsiSI CCGG 1 cut(s) 278
BslFI GGGAC 1 cut(s) 235
BslI CCNNNNNNNGG 1 cut(s) 294
BsmAI GTCTC 2 cut(s) 40, 279
BsmFI GGGAC 1 cut(s) 235
Bso31I GGTCTC 1 cut(s) 40
Bsp13I TCCGGA 1 cut(s) 277
Bsp143I GATC 1 cut(s) 34
Bsp19I CCATGG 1 cut(s) 288
BspACI CCGC 2 cut(s) 43, 294
BspCNI CTCAG 2 cut(s) 43, 256
BspEI TCCGGA 1 cut(s) 277
BspFNI CGCG 1 cut(s) 43
BspPI GGATC 1 cut(s) 29
BspTNI GGTCTC 1 cut(s) 40
BssECI CCNNGG 1 cut(s) 288
BssMI GATC 1 cut(s) 34
BssT1I CCWWGG 1 cut(s) 288
Bst4CI ACNGT 1 cut(s) 110
Bst6I CTCTTC 1 cut(s) 30
BstBAI YACGTR 1 cut(s) 209
BstDEI CTNAG 2 cut(s) 51, 243
BstDSI CCRYGG 1 cut(s) 288
BstF5I GGATG 1 cut(s) 172
BstFNI CGCG 1 cut(s) 43
BstHHI GCGC 1 cut(s) 43
BstKTI GATC 1 cut(s) 37
BstMAI GTCTC 2 cut(s) 40, 279
BstMBI GATC 1 cut(s) 34
BstSFI CTRYAG 1 cut(s) 322
BstUI CGCG 1 cut(s) 43
BstV1I GCAGC 1 cut(s) 369
BtgI CCRYGG 1 cut(s) 288
BtsCI GGATG 1 cut(s) 172
CfoI GCGC 1 cut(s) 43
CseI GACGC 1 cut(s) 78
CviAII CATG 4 cut(s) 289, 361, 525, 534
CviJI RGCY 9 cut(s) 15, 55, 94, 194, 267, 327, 375, 410, 464
CviKI_1 RGCY 9 cut(s) 15, 55, 94, 194, 267, 327, 375, 410, 464
DdeI CTNAG 2 cut(s) 51, 243
DpnI GATC 1 cut(s) 36
DpnII GATC 1 cut(s) 34
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 288
Eco31I GGTCTC 1 cut(s) 40
EcoT14I CCWWGG 1 cut(s) 288
ErhI CCWWGG 1 cut(s) 288
FaeI CATG 4 cut(s) 292, 364, 528, 537
FaqI GGGAC 1 cut(s) 235
FatI CATG 4 cut(s) 288, 360, 524, 533
FauI CCCGC 1 cut(s) 287
Fnu4HI GCNGC 1 cut(s) 358
FokI GGATG 1 cut(s) 179
Fsp4HI GCNGC 1 cut(s) 358
FspBI CTAG 2 cut(s) 398, 407
GlaI GCGC 1 cut(s) 42
GluI GCNGC 1 cut(s) 358
HapII CCGG 1 cut(s) 278
HgaI GACGC 1 cut(s) 78
HhaI GCGC 1 cut(s) 43
Hin1II CATG 4 cut(s) 292, 364, 528, 537
Hin6I GCGC 1 cut(s) 41
HinP1I GCGC 1 cut(s) 41
HindIII AAGCTT 1 cut(s) 13
HinfI GANTC 3 cut(s) 113, 333, 581
HpaII CCGG 1 cut(s) 278
Hpy166II GTNNAC 1 cut(s) 422
Hpy188I TCNGA 5 cut(s) 87, 246, 307, 316, 332
Hpy188III TCNNGA 2 cut(s) 278, 337
Hpy8I GTNNAC 1 cut(s) 422
HpyAV CCTTC 3 cut(s) 139, 241, 536
HpyCH4III ACNGT 1 cut(s) 110
HpyCH4IV ACGT 1 cut(s) 208
HpyF3I CTNAG 2 cut(s) 51, 243
HpySE526I ACGT 1 cut(s) 208
Hsp92II CATG 4 cut(s) 292, 364, 528, 537
HspAI GCGC 1 cut(s) 41
Kpn2I TCCGGA 1 cut(s) 277
Kzo9I GATC 1 cut(s) 34
LpnPI CCDG 6 cut(s) 51, 63, 291, 385, 506, 532
Lsp1109I GCAGC 1 cut(s) 369
MaeI CTAG 2 cut(s) 398, 407
MaeII ACGT 1 cut(s) 208
MalI GATC 1 cut(s) 36
MboI GATC 1 cut(s) 34
MboII GAAGA 2 cut(s) 17, 376
MluCI AATT 3 cut(s) 186, 440, 512
MlyI GAGTC 1 cut(s) 342
MnlI CCTC 1 cut(s) 83
MroI TCCGGA 1 cut(s) 277
MseI TTAA 1 cut(s) 446
MspI CCGG 1 cut(s) 278
MvnI CGCG 1 cut(s) 43
NcoI CCATGG 1 cut(s) 288
NdeII GATC 1 cut(s) 34
NlaIII CATG 4 cut(s) 292, 364, 528, 537
PfeI GAWTC 2 cut(s) 113, 581
PkrI GCNGC 1 cut(s) 359
PleI GAGTC 1 cut(s) 341
PpsI GAGTC 1 cut(s) 341
Ppu21I YACGTR 1 cut(s) 209
SaqAI TTAA 1 cut(s) 446
SatI GCNGC 1 cut(s) 358
Sau3AI GATC 1 cut(s) 34
SchI GAGTC 1 cut(s) 342
SfcI CTRYAG 1 cut(s) 322
Sse9I AATT 3 cut(s) 186, 440, 512
SsiI CCGC 2 cut(s) 43, 294
SspI AATATT 3 cut(s) 79, 157, 573
SspMI CTAG 2 cut(s) 398, 407
StyI CCWWGG 1 cut(s) 288
TaaI ACNGT 1 cut(s) 110
TaiI ACGT 1 cut(s) 211
TasI AATT 3 cut(s) 186, 440, 512
TfiI GAWTC 2 cut(s) 113, 581
Tru1I TTAA 1 cut(s) 446
Tru9I TTAA 1 cut(s) 446
TseI GCWGC 1 cut(s) 357
TspDTI ATGAA 8 cut(s) 191, 377, 402, 474, 524, 555, 573, 582
XapI RAATTY 2 cut(s) 186, 512
XspI CTAG 2 cut(s) 398, 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.