Prupe.1G585500_v2.0.a1

rRNA-processing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Reverse (-)
47537353 .. 47539708
2356 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G585500.1_v2.0.a1.CDS.3

Sequence Viewer

Length: 267 bp
ATGTTAGATACCCATGAATGGATGAGACTAGCAGCTGTGGGCAACTTTTGTTTTCGGGGTCCAAACCCGCTTTCGTGTAAGAAGAAAAAGACTCAGAAAAACCCAGATCATTCGGGACAAGGAAAGGATGGAGATGCTACTTTGAGGAGTCGTAAGAAGCGGAATAGGTCACGGAAAGGCAAAAGGCTAAAAGTTTTGAAATTTGGCCAATTAAGGTTGAATGAGCACGCTGTACTTCAGTCATCATTCTTGTCCAATTTTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fcf1

Protein Analysis

89

Amino Acids

10.11

Weight (kDa)

11.07

Isoelectric Point (pI)

35.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 68, 160
AcoI YGGCCR 1 cut(s) 205
AcsI RAATTY 1 cut(s) 200
AcuI CTGAAG 1 cut(s) 221
AfaI GTAC 1 cut(s) 234
AfiI CCNNNNNNNGG 1 cut(s) 18
AgsI TTSAA 2 cut(s) 199, 220
AjuI GAANNNNNNNTTGG 2 cut(s) 55, 87
AluBI AGCT 1 cut(s) 35
AluI AGCT 1 cut(s) 35
Alw21I GWGCWC 1 cut(s) 228
Alw26I GTCTC 1 cut(s) 19
AoxI GGCC 1 cut(s) 205
ApeKI GCWGC 1 cut(s) 32
ApoI RAATTY 1 cut(s) 200
AspS9I GGNCC 1 cut(s) 59
AvaII GGWCC 1 cut(s) 59
BalI TGGCCA 1 cut(s) 207
Bbv12I GWGCWC 1 cut(s) 228
BbvI GCAGC 1 cut(s) 44
BccI CCATC 1 cut(s) 122
BcoDI GTCTC 1 cut(s) 19
BfaI CTAG 1 cut(s) 29
BisI GCNGC 1 cut(s) 33
BlsI GCNGC 1 cut(s) 34
Bme18I GGWCC 1 cut(s) 59
BmgT120I GGNCC 1 cut(s) 59
BmiI GGNNCC 1 cut(s) 60
BmsI GCATC 1 cut(s) 124
Bsc4I CCNNNNNNNGG 1 cut(s) 18
BseGI GGATG 2 cut(s) 27, 133
BseLI CCNNNNNNNGG 1 cut(s) 18
BseMII CTCAG 1 cut(s) 107
BseRI GAGGAG 1 cut(s) 160
BseXI GCAGC 1 cut(s) 44
BshFI GGCC 1 cut(s) 207
BsiHKAI GWGCWC 1 cut(s) 228
BslFI GGGAC 1 cut(s) 129
BslI CCNNNNNNNGG 1 cut(s) 18
BsmAI GTCTC 1 cut(s) 19
BsmFI GGGAC 1 cut(s) 129
BsnI GGCC 1 cut(s) 207
Bsp1286I GDGCHC 1 cut(s) 228
Bsp143I GATC 1 cut(s) 106
BspACI CCGC 2 cut(s) 68, 160
BspANI GGCC 1 cut(s) 207
BspCNI CTCAG 1 cut(s) 106
BspLI GGNNCC 1 cut(s) 60
BssMI GATC 1 cut(s) 106
BstC8I GCNNGC 1 cut(s) 228
BstDEI CTNAG 1 cut(s) 93
BstF5I GGATG 2 cut(s) 27, 133
BstKTI GATC 1 cut(s) 109
BstMAI GTCTC 1 cut(s) 19
BstMBI GATC 1 cut(s) 106
BstV1I GCAGC 1 cut(s) 44
BsuRI GGCC 1 cut(s) 207
BtsCI GGATG 2 cut(s) 27, 133
Cac8I GCNNGC 1 cut(s) 228
Cfr13I GGNCC 1 cut(s) 59
Csp6I GTAC 1 cut(s) 233
CviAII CATG 1 cut(s) 14
CviJI RGCY 3 cut(s) 35, 187, 207
CviKI_1 RGCY 3 cut(s) 35, 187, 207
CviQI GTAC 1 cut(s) 233
DdeI CTNAG 1 cut(s) 93
DpnI GATC 1 cut(s) 108
DpnII GATC 1 cut(s) 106
EaeI YGGCCR 1 cut(s) 205
Eco47I GGWCC 1 cut(s) 59
Eco57I CTGAAG 1 cut(s) 221
FaeI CATG 1 cut(s) 17
FaiI YATR 1 cut(s) 15
FaqI GGGAC 1 cut(s) 129
FatI CATG 1 cut(s) 13
FauI CCCGC 1 cut(s) 75
Fnu4HI GCNGC 1 cut(s) 33
FokI GGATG 2 cut(s) 34, 140
Fsp4HI GCNGC 1 cut(s) 33
FspBI CTAG 1 cut(s) 29
GluI GCNGC 1 cut(s) 33
HaeIII GGCC 1 cut(s) 207
Hin1II CATG 1 cut(s) 17
HinfI GANTC 2 cut(s) 91, 148
Hpy188I TCNGA 1 cut(s) 96
Hpy188III TCNNGA 1 cut(s) 114
HpyF3I CTNAG 1 cut(s) 93
Hsp92II CATG 1 cut(s) 17
Kzo9I GATC 1 cut(s) 106
LpnPI CCDG 1 cut(s) 117
Lsp1109I GCAGC 1 cut(s) 44
LweI GCATC 1 cut(s) 124
MaeI CTAG 1 cut(s) 29
MaeIII GTNAC 1 cut(s) 168
MalI GATC 1 cut(s) 108
MboI GATC 1 cut(s) 106
MboII GAAGA 1 cut(s) 94
MhlI GDGCHC 1 cut(s) 228
MlsI TGGCCA 1 cut(s) 207
MluCI AATT 4 cut(s) 200, 209, 256, 262
MluNI TGGCCA 1 cut(s) 207
MlyI GAGTC 2 cut(s) 85, 157
MnlI CCTC 1 cut(s) 138
Mox20I TGGCCA 1 cut(s) 207
MscI TGGCCA 1 cut(s) 207
MseI TTAA 2 cut(s) 212, 261
Msp20I TGGCCA 1 cut(s) 207
MspA1I CMGCKG 1 cut(s) 35
NdeII GATC 1 cut(s) 106
NlaIII CATG 1 cut(s) 17
NlaIV GGNNCC 1 cut(s) 60
NmuCI GTSAC 1 cut(s) 168
PkrI GCNGC 1 cut(s) 34
PleI GAGTC 2 cut(s) 85, 156
PpsI GAGTC 2 cut(s) 85, 156
PspN4I GGNNCC 1 cut(s) 60
PspPI GGNCC 1 cut(s) 59
PvuII CAGCTG 1 cut(s) 35
RsaI GTAC 1 cut(s) 234
RsaNI GTAC 1 cut(s) 233
SaqAI TTAA 2 cut(s) 212, 261
SatI GCNGC 1 cut(s) 33
Sau3AI GATC 1 cut(s) 106
Sau96I GGNCC 1 cut(s) 59
SchI GAGTC 2 cut(s) 85, 157
SduI GDGCHC 1 cut(s) 228
SetI ASST 3 cut(s) 37, 170, 218
SfaNI GCATC 1 cut(s) 124
SinI GGWCC 1 cut(s) 59
Sse9I AATT 4 cut(s) 200, 209, 256, 262
SsiI CCGC 2 cut(s) 68, 160
SspMI CTAG 1 cut(s) 29
TasI AATT 4 cut(s) 200, 209, 256, 262
TatI WGTACW 1 cut(s) 232
Tru1I TTAA 2 cut(s) 212, 261
Tru9I TTAA 2 cut(s) 212, 261
TseFI GTSAC 1 cut(s) 168
TseI GCWGC 1 cut(s) 32
Tsp45I GTSAC 1 cut(s) 168
TspDTI ATGAA 1 cut(s) 30
TspGWI ACGGA 1 cut(s) 187
VpaK11BI GGWCC 1 cut(s) 59
XapI RAATTY 1 cut(s) 200
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.