Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

4318854 .. 4319494

Gene Structure 641 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G039700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGAACGAAAGGTCTATTAATTGGATGACGGAGATAGTGGAAATGGAGAAACTGACTGATTATACATGTAATCCGGAATATATATCCGAATGGCATAGGCTCATGACTGAACAAGAAACATTCATCCAAAGGGTCTTGCGTGACGCTGAGATAAACATAAATGTAAAGCGAATTGGGATGGTTGAAGTTGAGCTCAACAAAATGCCGAAAAAGCTGTCATTTGTTGCTGAGGCCATGACTGCTGTTATGCAGATCATTGGAACATCCAAAGAATCACTTAAGAAAATTCTTGTGAGGGGAGAATTTGATGAGTTCCCGGATGACAAACACATGCTTTGCAAGGCCAGGCTTGTTGAGATGCTCAATAAGTGCTCAGATCAGCTTCACGAGGGCAATGTGAGTGACCCCAAAAGTAATTTCTTACTGGAGGAGATTGCGATTTTGGAGGAGGCAAAAGGTATCAACCTTCCTAATTTGTTCCGTGCAATGCTTTTCTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007005 GO:0008017 GO:0008092 GO:0008150 GO:0009987 GO:0015631 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0044424 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04139 ko04214 ko04217 ko04621 ko04668 ko05162 ko05164 ko05165 map04139 map04214 map04217 map04621 map04668 map05162 map05164 map05165

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

167

Amino Acids

19.35

Weight (kDa)

5.11

Isoelectric Point (pI)

39.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	73
AcsI	RAATTY	2 cut(s)	285, 302
AflII	CTTAAG	1 cut(s)	278
AflIII	ACRYGT	1 cut(s)	65
AgsI	TTSAA	1 cut(s)	185
AjnI	CCWGG	1 cut(s)	344
AjuI	GAANNNNNNNTTGG	2 cut(s)	401, 433
AluBI	AGCT	3 cut(s)	193, 214, 382
AluI	AGCT	3 cut(s)	193, 214, 382
Alw21I	GWGCWC	2 cut(s)	195, 374
Aor13HI	TCCGGA	1 cut(s)	73
AoxI	GGCC	2 cut(s)	231, 342
ApoI	RAATTY	2 cut(s)	285, 302
ArsI	GACNNNNNNTTYG	2 cut(s)	200, 232
AseI	ATTAAT	1 cut(s)	18
AsuC2I	CCSGG	1 cut(s)	317
BanII	GRGCYC	1 cut(s)	195
BauI	CACGAG	1 cut(s)	386
Bbv12I	GWGCWC	2 cut(s)	195, 374
BbvCI	CCTCAGC	1 cut(s)	228
BccI	CCATC	1 cut(s)	172
BciT130I	CCWGG	1 cut(s)	346
BcnI	CCSGG	1 cut(s)	317
BfrI	CTTAAG	1 cut(s)	278
Bme1390I	CCNGG	2 cut(s)	317, 346
BmrFI	CCNGG	2 cut(s)	317, 346
BmsI	GCATC	1 cut(s)	348
BpmI	CTGGAG	1 cut(s)	446
Bpu10I	CCTNAGC	1 cut(s)	228
BpuMI	CCSGG	1 cut(s)	317
BsaWI	WCCGGW	1 cut(s)	73
Bse1I	ACTGG	1 cut(s)	429
Bse3DI	GCAATG	2 cut(s)	400, 492
BseAI	TCCGGA	1 cut(s)	73
BseBI	CCWGG	1 cut(s)	346
BseGI	GGATG	5 cut(s)	30, 123, 183, 263, 325
BseMI	GCAATG	2 cut(s)	400, 492
BseMII	CTCAG	3 cut(s)	138, 219, 387
BseNI	ACTGG	1 cut(s)	429
BseRI	GAGGAG	2 cut(s)	443, 461
BshFI	GGCC	2 cut(s)	233, 344
BsiHKAI	GWGCWC	2 cut(s)	195, 374
BsiSI	CCGG	2 cut(s)	74, 317
BsnI	GGCC	2 cut(s)	233, 344
Bsp1286I	GDGCHC	2 cut(s)	195, 374
Bsp13I	TCCGGA	1 cut(s)	73
Bsp143I	GATC	2 cut(s)	252, 376
BspANI	GGCC	2 cut(s)	233, 344
BspCNI	CTCAG	3 cut(s)	139, 220, 386
BspEI	TCCGGA	1 cut(s)	73
BspHI	TCATGA	1 cut(s)	102
BspTI	CTTAAG	1 cut(s)	278
BsrDI	GCAATG	2 cut(s)	400, 492
BsrI	ACTGG	1 cut(s)	429
BssMI	GATC	2 cut(s)	252, 376
BssSI	CACGAG	1 cut(s)	386
Bst2BI	CACGAG	1 cut(s)	386
Bst2UI	CCWGG	1 cut(s)	346
BstAFI	CTTAAG	1 cut(s)	278
BstDEI	CTNAG	3 cut(s)	147, 228, 373
BstF5I	GGATG	5 cut(s)	30, 123, 183, 263, 325
BstKTI	GATC	2 cut(s)	255, 379
BstMBI	GATC	2 cut(s)	252, 376
BstMWI	GCNNNNNNNGC	2 cut(s)	211, 239
BstNI	CCWGG	1 cut(s)	346
BstNSI	RCATGY	2 cut(s)	69, 334
BstSCI	CCNGG	2 cut(s)	315, 344
BsuRI	GGCC	2 cut(s)	233, 344
BtsCI	GGATG	5 cut(s)	30, 123, 183, 263, 325
CciI	TCATGA	1 cut(s)	102
CseI	GACGC	1 cut(s)	152
CviAII	CATG	4 cut(s)	66, 103, 235, 331
CviJI	RGCY	7 cut(s)	100, 193, 214, 233, 344, 349, 382
CviKI_1	RGCY	7 cut(s)	100, 193, 214, 233, 344, 349, 382
DdeI	CTNAG	3 cut(s)	147, 228, 373
DpnI	GATC	2 cut(s)	254, 378
DpnII	GATC	2 cut(s)	252, 376
Ecl136II	GAGCTC	1 cut(s)	193
Eco24I	GRGCYC	1 cut(s)	195
Eco53kI	GAGCTC	1 cut(s)	193
EcoICRI	GAGCTC	1 cut(s)	193
EcoRII	CCWGG	1 cut(s)	344
EcoT38I	GRGCYC	1 cut(s)	195
FaeI	CATG	4 cut(s)	69, 106, 238, 334
FalI	AAGNNNNNCTT	2 cut(s)	261, 293
FatI	CATG	4 cut(s)	65, 102, 234, 330
FokI	GGATG	5 cut(s)	37, 110, 190, 250, 332
FriOI	GRGCYC	1 cut(s)	195
GsuI	CTGGAG	1 cut(s)	446
HaeIII	GGCC	2 cut(s)	233, 344
HapII	CCGG	2 cut(s)	74, 317
HgaI	GACGC	1 cut(s)	152
Hin1II	CATG	4 cut(s)	69, 106, 238, 334
HinfI	GANTC	1 cut(s)	272
HpaII	CCGG	2 cut(s)	74, 317
Hpy188I	TCNGA	2 cut(s)	88, 376
Hpy188III	TCNNGA	3 cut(s)	74, 103, 386
HpyAV	CCTTC	1 cut(s)	476
HpyCH4V	TGCA	3 cut(s)	250, 339, 485
HpyF10VI	GCNNNNNNNGC	2 cut(s)	211, 239
HpyF3I	CTNAG	3 cut(s)	147, 228, 373
Hsp92II	CATG	4 cut(s)	69, 106, 238, 334
Kpn2I	TCCGGA	1 cut(s)	73
Kzo9I	GATC	2 cut(s)	252, 376
LpnPI	CCDG	5 cut(s)	87, 330, 331, 358, 410
LweI	GCATC	1 cut(s)	348
MaeIII	GTNAC	2 cut(s)	140, 401
MalI	GATC	2 cut(s)	254, 378
MboI	GATC	2 cut(s)	252, 376
MhlI	GDGCHC	2 cut(s)	195, 374
MluCI	AATT	6 cut(s)	19, 171, 285, 302, 415, 472
MnlI	CCTC	6 cut(s)	223, 288, 382, 421, 439, 442
MroI	TCCGGA	1 cut(s)	73
MseI	TTAA	2 cut(s)	18, 279
MspCI	CTTAAG	1 cut(s)	278
MspI	CCGG	2 cut(s)	74, 317
MspR9I	CCNGG	2 cut(s)	317, 346
MvaI	CCWGG	1 cut(s)	346
MwoI	GCNNNNNNNGC	2 cut(s)	211, 239
NciI	CCSGG	1 cut(s)	317
NdeII	GATC	2 cut(s)	252, 376
NlaIII	CATG	4 cut(s)	69, 106, 238, 334
NmuCI	GTSAC	2 cut(s)	140, 401
NspI	RCATGY	2 cut(s)	69, 334
PagI	TCATGA	1 cut(s)	102
PciI	ACATGT	1 cut(s)	65
PfeI	GAWTC	1 cut(s)	272
PfoI	TCCNGGA	1 cut(s)	315
PscI	ACATGT	1 cut(s)	65
PshBI	ATTAAT	1 cut(s)	18
Psp124BI	GAGCTC	1 cut(s)	195
Psp6I	CCWGG	1 cut(s)	344
PspGI	CCWGG	1 cut(s)	344
SacI	GAGCTC	1 cut(s)	195
SaqAI	TTAA	2 cut(s)	18, 279
Sau3AI	GATC	2 cut(s)	252, 376
ScrFI	CCNGG	2 cut(s)	317, 346
SduI	GDGCHC	2 cut(s)	195, 374
SetI	ASST	6 cut(s)	14, 195, 216, 384, 460, 468
SfaNI	GCATC	1 cut(s)	348
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
Sse9I	AATT	6 cut(s)	19, 171, 285, 302, 415, 472
SstI	GAGCTC	1 cut(s)	195
StyD4I	CCNGG	2 cut(s)	315, 344
TasI	AATT	6 cut(s)	19, 171, 285, 302, 415, 472
TfiI	GAWTC	1 cut(s)	272
Tru1I	TTAA	2 cut(s)	18, 279
Tru9I	TTAA	2 cut(s)	18, 279
TseFI	GTSAC	2 cut(s)	140, 401
Tsp45I	GTSAC	2 cut(s)	140, 401
TspDTI	ATGAA	2 cut(s)	17, 112
TspGWI	ACGGA	2 cut(s)	44, 470
Vha464I	CTTAAG	1 cut(s)	278
VspI	ATTAAT	1 cut(s)	18
XapI	RAATTY	2 cut(s)	285, 302
XceI	RCATGY	2 cut(s)	69, 334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.