Prupe.2G129400_v2.0.a1

DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
N/A
Physical Location & Seq
Reverse (-)
18654263 .. 18655251
989 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G129400.1

Sequence Viewer

Length: 621 bp
ATGTTAGGAGATGAAAAAAGTAGCTTGGAATCTGATTTTGCTCTGTTGGATACCATTCACCAACATCTTCTTGATGATAATTATTTCCATGGCACTCTCATGGCAAGTCTTTTCCCAAATATCCCACCAGCAGTGGAGGATTTGGGAAAACTTAGCATAGTGGTTCCTGGTGAGTCTTCTGAGTCTTCCTCATGGAGTCCACCCAACCAAAACGGCGTCGCTGAGCCAGCGCCCCCTACGTGCGCCGACACAACTGAGGTAAAAAATAATGTCCAGCCAAAGCTTGCGGCACGTGAAACCCACGCGCCTCCTAGAGGGAGGCAAAATTACAGGGGAGTGCGGCAGAGGCCTTGGGGGAAATACGCGGCGGAGATTAGGGATCCGGCTAAAAATGGCGCAAGGATGTGGCTCGGGACCTACGAAACGGCTGAGGATGCGGCTTTGGCTTATGATCGAGCCGCCTTTAAGATACGCGGCTCGAAGGCTCTTCTGAATTTTCCGCACCTCATTGGCTCAGATGATGATGCATGCGACCGGGCCAGAGTGACTTCCACGCGCCGCTATCGAGAGAGTTGTGATTCATTGGCATTTTCGTCGGATGGTGGCTCACCGAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

207

Amino Acids

22.56

Weight (kDa)

5.97

Isoelectric Point (pI)

43.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 305, 365, 474, 556
AciI CCGC 9 cut(s) 287, 340, 365, 368, 437, 459, 474, 500, 559
AclWI GGATC 2 cut(s) 374, 387
AcsI RAATTY 1 cut(s) 493
AcvI CACGTG 1 cut(s) 293
AcyI GRCGYC 1 cut(s) 216
AfiI CCNNNNNNNGG 1 cut(s) 314
AjnI CCWGG 1 cut(s) 166
AluBI AGCT 2 cut(s) 24, 283
AluI AGCT 2 cut(s) 24, 283
AlwI GGATC 2 cut(s) 374, 387
Ama87I CYCGRG 1 cut(s) 410
AoxI GGCC 2 cut(s) 347, 537
ApoI RAATTY 1 cut(s) 493
AspLEI GCGC 5 cut(s) 232, 245, 307, 398, 558
AspS9I GGNCC 2 cut(s) 414, 537
AsuC2I CCSGG 1 cut(s) 536
AsuHPI GGTGA 3 cut(s) 50, 182, 600
AvaI CYCGRG 1 cut(s) 410
AvaII GGWCC 1 cut(s) 414
BamHI GGATCC 1 cut(s) 379
BbrPI CACGTG 1 cut(s) 293
BbsI GAAGAC 2 cut(s) 168, 177
BbvCI CCTCAGC 1 cut(s) 429
BccI CCATC 1 cut(s) 593
BceAI ACGGC 2 cut(s) 229, 441
BcgI CGANNNNNNTGC 2 cut(s) 576, 610
BciT130I CCWGG 1 cut(s) 168
BciVI GTATCC 1 cut(s) 43
BcnI CCSGG 1 cut(s) 536
BfaI CTAG 1 cut(s) 312
BfoI RGCGCY 1 cut(s) 233
BfuI GTATCC 1 cut(s) 43
BisI GCNGC 7 cut(s) 288, 341, 366, 438, 459, 475, 559
BlpI GCTNAGC 1 cut(s) 222
BlsI GCNGC 7 cut(s) 289, 342, 367, 439, 460, 476, 560
Bme1390I CCNGG 2 cut(s) 168, 536
Bme18I GGWCC 1 cut(s) 414
BmeT110I CYCGRG 1 cut(s) 410
BmgT120I GGNCC 2 cut(s) 414, 537
BmiI GGNNCC 3 cut(s) 165, 381, 415
BmrFI CCNGG 2 cut(s) 168, 536
BmsI GCATC 2 cut(s) 424, 514
BpiI GAAGAC 2 cut(s) 168, 177
BplI GAGNNNNNCTC 2 cut(s) 173, 205
Bpu10I CCTNAGC 1 cut(s) 429
Bpu1102I GCTNAGC 1 cut(s) 222
BpuMI CCSGG 1 cut(s) 536
BsaAI YACGTR 2 cut(s) 240, 293
BsaHI GRCGYC 1 cut(s) 216
BsaJI CCNNGG 2 cut(s) 88, 350
Bsc4I CCNNNNNNNGG 1 cut(s) 314
BseBI CCWGG 1 cut(s) 168
BseDI CCNNGG 2 cut(s) 88, 350
BseGI GGATG 3 cut(s) 408, 439, 604
BseLI CCNNNNNNNGG 1 cut(s) 314
BseMII CTCAG 5 cut(s) 171, 213, 246, 420, 528
Bsh1236I CGCG 4 cut(s) 305, 365, 474, 556
Bsh1285I CGRYCG 1 cut(s) 535
BshFI GGCC 2 cut(s) 349, 539
BsiEI CGRYCG 1 cut(s) 535
BsiHKCI CYCGRG 1 cut(s) 410
BsiSI CCGG 2 cut(s) 383, 535
BslFI GGGAC 1 cut(s) 427
BslI CCNNNNNNNGG 1 cut(s) 314
BsmFI GGGAC 1 cut(s) 427
BsnI GGCC 2 cut(s) 349, 539
BsoBI CYCGRG 1 cut(s) 410
Bsp143I GATC 2 cut(s) 379, 451
Bsp1720I GCTNAGC 1 cut(s) 222
Bsp19I CCATGG 1 cut(s) 88
BspACI CCGC 9 cut(s) 287, 340, 365, 368, 437, 459, 474, 500, 559
BspANI GGCC 2 cut(s) 349, 539
BspCNI CTCAG 5 cut(s) 172, 214, 247, 421, 527
BspFNI CGCG 4 cut(s) 305, 365, 474, 556
BspLI GGNNCC 3 cut(s) 165, 381, 415
BspPI GGATC 2 cut(s) 374, 387
BspQI GCTCTTC 1 cut(s) 492
BssECI CCNNGG 2 cut(s) 88, 350
BssMI GATC 2 cut(s) 379, 451
BssNI GRCGYC 1 cut(s) 216
BssT1I CCWWGG 2 cut(s) 88, 350
Bst2UI CCWGG 1 cut(s) 168
Bst6I CTCTTC 1 cut(s) 492
BstACI GRCGYC 1 cut(s) 216
BstBAI YACGTR 2 cut(s) 240, 293
BstC8I GCNNGC 3 cut(s) 228, 285, 529
BstDEI CTNAG 6 cut(s) 152, 180, 222, 255, 429, 514
BstDSI CCRYGG 1 cut(s) 88
BstENI CCTNNNNNAGG 1 cut(s) 312
BstF5I GGATG 3 cut(s) 408, 439, 604
BstFNI CGCG 4 cut(s) 305, 365, 474, 556
BstH2I RGCGCY 1 cut(s) 233
BstHHI GCGC 5 cut(s) 232, 245, 307, 398, 558
BstKTI GATC 2 cut(s) 382, 454
BstMBI GATC 2 cut(s) 379, 451
BstMCI CGRYCG 1 cut(s) 535
BstMWI GCNNNNNNNGC 4 cut(s) 227, 346, 434, 443
BstNI CCWGG 1 cut(s) 168
BstNSI RCATGY 1 cut(s) 531
BstSCI CCNGG 2 cut(s) 166, 534
BstUI CGCG 4 cut(s) 305, 365, 474, 556
BstV2I GAAGAC 2 cut(s) 168, 177
BstX2I RGATCY 1 cut(s) 379
BstYI RGATCY 1 cut(s) 379
BsuI GTATCC 1 cut(s) 43
BsuRI GGCC 2 cut(s) 349, 539
BtgI CCRYGG 1 cut(s) 88
BtsCI GGATG 3 cut(s) 408, 439, 604
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 1 cut(s) 138
Cac8I GCNNGC 3 cut(s) 228, 285, 529
CfoI GCGC 5 cut(s) 232, 245, 307, 398, 558
Cfr13I GGNCC 2 cut(s) 414, 537
CseI GACGC 1 cut(s) 205
CviAII CATG 4 cut(s) 89, 100, 192, 528
DdeI CTNAG 6 cut(s) 152, 180, 222, 255, 429, 514
DpnI GATC 2 cut(s) 381, 453
DpnII GATC 2 cut(s) 379, 451
Eam1104I CTCTTC 1 cut(s) 492
EarI CTCTTC 1 cut(s) 492
EciI GGCGGA 1 cut(s) 383
Eco130I CCWWGG 2 cut(s) 88, 350
Eco147I AGGCCT 1 cut(s) 349
Eco47I GGWCC 1 cut(s) 414
Eco72I CACGTG 1 cut(s) 293
Eco88I CYCGRG 1 cut(s) 410
EcoNI CCTNNNNNAGG 1 cut(s) 312
EcoO109I RGGNCCY 1 cut(s) 414
EcoRII CCWGG 1 cut(s) 166
EcoT14I CCWWGG 2 cut(s) 88, 350
EcoT22I ATGCAT 1 cut(s) 529
ErhI CCWWGG 2 cut(s) 88, 350
FaeI CATG 4 cut(s) 92, 103, 195, 531
FaiI YATR 6 cut(s) 90, 101, 158, 193, 450, 529
FaqI GGGAC 1 cut(s) 427
FatI CATG 4 cut(s) 88, 99, 191, 527
Fnu4HI GCNGC 7 cut(s) 288, 341, 366, 438, 459, 475, 559
FokI GGATG 3 cut(s) 415, 446, 611
Fsp4HI GCNGC 7 cut(s) 288, 341, 366, 438, 459, 475, 559
FspBI CTAG 1 cut(s) 312
GlaI GCGC 5 cut(s) 231, 244, 306, 397, 557
GluI GCNGC 7 cut(s) 288, 341, 366, 438, 459, 475, 559
HaeII RGCGCY 1 cut(s) 233
HaeIII GGCC 2 cut(s) 349, 539
HapII CCGG 2 cut(s) 383, 535
HgaI GACGC 1 cut(s) 205
HhaI GCGC 5 cut(s) 232, 245, 307, 398, 558
Hin1I GRCGYC 1 cut(s) 216
Hin1II CATG 4 cut(s) 92, 103, 195, 531
Hin6I GCGC 5 cut(s) 230, 243, 305, 396, 556
HinP1I GCGC 5 cut(s) 230, 243, 305, 396, 556
HindIII AAGCTT 1 cut(s) 281
HinfI GANTC 5 cut(s) 29, 173, 182, 196, 578
HpaII CCGG 2 cut(s) 383, 535
HphI GGTGA 3 cut(s) 50, 182, 600
Hpy166II GTNNAC 1 cut(s) 200
Hpy188I TCNGA 5 cut(s) 34, 181, 492, 517, 598
Hpy188III TCNNGA 3 cut(s) 71, 412, 566
Hpy8I GTNNAC 1 cut(s) 200
Hpy99I CGWCG 2 cut(s) 221, 598
HpyAV CCTTC 1 cut(s) 475
HpyCH4IV ACGT 2 cut(s) 239, 292
HpyCH4V TGCA 1 cut(s) 527
HpyF10VI GCNNNNNNNGC 4 cut(s) 227, 346, 434, 443
HpyF3I CTNAG 6 cut(s) 152, 180, 222, 255, 429, 514
HpySE526I ACGT 2 cut(s) 239, 292
Hsp92I GRCGYC 1 cut(s) 216
Hsp92II CATG 4 cut(s) 92, 103, 195, 531
HspAI GCGC 5 cut(s) 230, 243, 305, 396, 556
Kzo9I GATC 2 cut(s) 379, 451
LguI GCTCTTC 1 cut(s) 492
LpnPI CCDG 9 cut(s) 141, 153, 180, 240, 287, 316, 396, 548, 553
LweI GCATC 2 cut(s) 424, 514
MaeI CTAG 1 cut(s) 312
MaeII ACGT 2 cut(s) 239, 292
MaeIII GTNAC 1 cut(s) 544
MalI GATC 2 cut(s) 381, 453
MboI GATC 2 cut(s) 379, 451
MboII GAAGA 4 cut(s) 59, 168, 177, 479
MflI RGATCY 1 cut(s) 379
MluCI AATT 3 cut(s) 79, 325, 493
MlyI GAGTC 3 cut(s) 182, 191, 205
MmeI TCCRAC 2 cut(s) 27, 576
MnlI CCTC 9 cut(s) 130, 199, 250, 308, 312, 318, 339, 424, 515
Mph1103I ATGCAT 1 cut(s) 529
MseI TTAA 1 cut(s) 465
MslI CAYNNNNRTG 1 cut(s) 98
MspI CCGG 2 cut(s) 383, 535
MspR9I CCNGG 2 cut(s) 168, 536
MvaI CCWGG 1 cut(s) 168
MvnI CGCG 4 cut(s) 305, 365, 474, 556
MwoI GCNNNNNNNGC 4 cut(s) 227, 346, 434, 443
NciI CCSGG 1 cut(s) 536
NcoI CCATGG 1 cut(s) 88
NdeII GATC 2 cut(s) 379, 451
NlaIII CATG 4 cut(s) 92, 103, 195, 531
NlaIV GGNNCC 3 cut(s) 165, 381, 415
NmuCI GTSAC 1 cut(s) 544
NsiI ATGCAT 1 cut(s) 529
NspI RCATGY 1 cut(s) 531
PaeI GCATGC 1 cut(s) 531
PceI AGGCCT 1 cut(s) 349
PciSI GCTCTTC 1 cut(s) 492
PcsI WCGNNNNNNNCGW 1 cut(s) 417
PfeI GAWTC 2 cut(s) 29, 578
PkrI GCNGC 7 cut(s) 289, 342, 367, 439, 460, 476, 560
PleI GAGTC 3 cut(s) 181, 190, 204
PmaCI CACGTG 1 cut(s) 293
PmlI CACGTG 1 cut(s) 293
PpsI GAGTC 3 cut(s) 181, 190, 204
Ppu21I YACGTR 2 cut(s) 240, 293
PpuMI RGGWCCY 1 cut(s) 414
Psp5II RGGWCCY 1 cut(s) 414
Psp6I CCWGG 1 cut(s) 166
PspCI CACGTG 1 cut(s) 293
PspGI CCWGG 1 cut(s) 166
PspN4I GGNNCC 3 cut(s) 165, 381, 415
PspPI GGNCC 2 cut(s) 414, 537
PspPPI RGGWCCY 1 cut(s) 414
PsuI RGATCY 1 cut(s) 379
RseI CAYNNNNRTG 1 cut(s) 98
SapI GCTCTTC 1 cut(s) 492
SaqAI TTAA 1 cut(s) 465
SatI GCNGC 7 cut(s) 288, 341, 366, 438, 459, 475, 559
Sau3AI GATC 2 cut(s) 379, 451
Sau96I GGNCC 2 cut(s) 414, 537
SchI GAGTC 3 cut(s) 182, 191, 205
ScrFI CCNGG 2 cut(s) 168, 536
SetI ASST 7 cut(s) 26, 242, 261, 285, 295, 419, 507
SfaNI GCATC 2 cut(s) 424, 514
SinI GGWCC 1 cut(s) 414
SmiMI CAYNNNNRTG 1 cut(s) 98
SphI GCATGC 1 cut(s) 531
Sse9I AATT 3 cut(s) 79, 325, 493
SseBI AGGCCT 1 cut(s) 349
SsiI CCGC 9 cut(s) 287, 340, 365, 368, 437, 459, 474, 500, 559
SspMI CTAG 1 cut(s) 312
StuI AGGCCT 1 cut(s) 349
StyD4I CCNGG 2 cut(s) 166, 534
StyI CCWWGG 2 cut(s) 88, 350
TaiI ACGT 2 cut(s) 242, 295
TaqI TCGA 3 cut(s) 454, 479, 565
TasI AATT 3 cut(s) 79, 325, 493
TauI GCSGC 7 cut(s) 290, 343, 368, 440, 461, 477, 561
TfiI GAWTC 2 cut(s) 29, 578
Tru1I TTAA 1 cut(s) 465
Tru9I TTAA 1 cut(s) 465
TscAI CASTG 1 cut(s) 138
TseFI GTSAC 1 cut(s) 544
Tsp45I GTSAC 1 cut(s) 544
TspDTI ATGAA 2 cut(s) 27, 570
TspRI CASTG 1 cut(s) 138
VpaK11BI GGWCC 1 cut(s) 414
XagI CCTNNNNNAGG 1 cut(s) 312
XapI RAATTY 1 cut(s) 493
XceI RCATGY 1 cut(s) 531
XspI CTAG 1 cut(s) 312
Zsp2I ATGCAT 1 cut(s) 529
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.