Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

19731808 .. 19732291

Gene Structure 484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G140700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGGTTCATTGCAAAGATCATCTATGTCATTTAGGAGGCAAGGCTCCTCCGGCCGCATTTGGGAGGATAGGGTTCCAGTATTCGATCAAAAGCCGACTTCCTTTTCTGGTCCCATTTGCCCTACCTTCTCTGGTCCAATTCGCCCTCCCTTCTCTGGCGTCAAAAGTTTAGAACACCATCCAAATTTCGACAAAAAATTTCAGGAACGAGAGTTTGTTGATTCAAATTACGCACGAGGTTCACCTTCACCTTCTAAGCAAGAAAATAAGGTGGCTCAAAGGTGTTTTCTTGCTTCTTTCTTTGGGCGATGCATGGGTTCTCCTACTGCTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009555 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010033 GO:0010224 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033036 GO:0033037 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051179 GO:0051252 GO:0051253 GO:0052545 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1900376 GO:1900377 GO:1901363 GO:1901700 GO:1902679 GO:1903085 GO:1903086 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2000762 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

112

Amino Acids

12.41

Weight (kDa)

9.93

Isoelectric Point (pI)

68.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	55
AcoI	YGGCCR	1 cut(s)	52
AcsI	RAATTY	2 cut(s)	184, 197
AcyI	GRCGYC	1 cut(s)	159
AfiI	CCNNNNNNNGG	2 cut(s)	61, 155
AgsI	TTSAA	1 cut(s)	225
AoxI	GGCC	1 cut(s)	52
ApeKI	GCWGC	1 cut(s)	329
ApoI	RAATTY	2 cut(s)	184, 197
AspS9I	GGNCC	2 cut(s)	110, 134
AsuHPI	GGTGA	2 cut(s)	234, 240
AvaII	GGWCC	2 cut(s)	110, 134
BauI	CACGAG	1 cut(s)	234
BbvI	GCAGC	1 cut(s)	316
BccI	CCATC	1 cut(s)	186
BfaI	CTAG	1 cut(s)	334
BisI	GCNGC	2 cut(s)	55, 330
BlsI	GCNGC	2 cut(s)	56, 331
Bme18I	GGWCC	2 cut(s)	110, 134
BmgT120I	GGNCC	2 cut(s)	110, 134
BmiI	GGNNCC	3 cut(s)	46, 75, 112
BmsI	GCATC	1 cut(s)	299
BsaHI	GRCGYC	1 cut(s)	159
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 155
Bse1I	ACTGG	1 cut(s)	77
Bse3DI	GCAATG	1 cut(s)	8
BseGI	GGATG	1 cut(s)	178
BseLI	CCNNNNNNNGG	2 cut(s)	61, 155
BseMI	GCAATG	1 cut(s)	8
BseNI	ACTGG	1 cut(s)	77
BseRI	GAGGAG	1 cut(s)	37
BseX3I	CGGCCG	1 cut(s)	52
BseXI	GCAGC	1 cut(s)	316
Bsh1285I	CGRYCG	1 cut(s)	55
BshFI	GGCC	1 cut(s)	54
BsiEI	CGRYCG	1 cut(s)	55
BsiSI	CCGG	1 cut(s)	51
BslFI	GGGAC	1 cut(s)	96
BslI	CCNNNNNNNGG	2 cut(s)	61, 155
BsmFI	GGGAC	1 cut(s)	96
BsnI	GGCC	1 cut(s)	54
Bsp143I	GATC	2 cut(s)	17, 85
BspACI	CCGC	1 cut(s)	55
BspANI	GGCC	1 cut(s)	54
BspLI	GGNNCC	3 cut(s)	46, 75, 112
BsrDI	GCAATG	1 cut(s)	8
BsrI	ACTGG	1 cut(s)	77
BssMI	GATC	2 cut(s)	17, 85
BssNI	GRCGYC	1 cut(s)	159
BssSI	CACGAG	1 cut(s)	234
Bst2BI	CACGAG	1 cut(s)	234
BstACI	GRCGYC	1 cut(s)	159
BstDEI	CTNAG	1 cut(s)	255
BstF5I	GGATG	1 cut(s)	178
BstKTI	GATC	2 cut(s)	20, 88
BstMBI	GATC	2 cut(s)	17, 85
BstMCI	CGRYCG	1 cut(s)	55
BstMWI	GCNNNNNNNGC	1 cut(s)	51
BstV1I	GCAGC	1 cut(s)	316
BstZI	CGGCCG	1 cut(s)	52
BsuRI	GGCC	1 cut(s)	54
BtgZI	GCGATG	1 cut(s)	322
BtsCI	GGATG	1 cut(s)	178
Cfr13I	GGNCC	2 cut(s)	110, 134
CseI	GACGC	1 cut(s)	148
CviAII	CATG	1 cut(s)	313
CviJI	RGCY	4 cut(s)	45, 54, 94, 275
CviKI_1	RGCY	4 cut(s)	45, 54, 94, 275
DdeI	CTNAG	1 cut(s)	255
DpnI	GATC	2 cut(s)	19, 87
DpnII	GATC	2 cut(s)	17, 85
EaeI	YGGCCR	1 cut(s)	52
EagI	CGGCCG	1 cut(s)	52
EclXI	CGGCCG	1 cut(s)	52
Eco47I	GGWCC	2 cut(s)	110, 134
Eco52I	CGGCCG	1 cut(s)	52
EcoT22I	ATGCAT	1 cut(s)	314
FaeI	CATG	1 cut(s)	316
FaiI	YATR	2 cut(s)	26, 314
FaqI	GGGAC	1 cut(s)	96
FatI	CATG	1 cut(s)	312
Fnu4HI	GCNGC	2 cut(s)	55, 330
FokI	GGATG	1 cut(s)	165
Fsp4HI	GCNGC	2 cut(s)	55, 330
FspBI	CTAG	1 cut(s)	334
GluI	GCNGC	2 cut(s)	55, 330
HaeIII	GGCC	1 cut(s)	54
HapII	CCGG	1 cut(s)	51
HgaI	GACGC	1 cut(s)	148
Hin1I	GRCGYC	1 cut(s)	159
Hin1II	CATG	1 cut(s)	316
HinfI	GANTC	1 cut(s)	221
HpaII	CCGG	1 cut(s)	51
HphI	GGTGA	2 cut(s)	234, 240
Hpy166II	GTNNAC	1 cut(s)	242
Hpy188III	TCNNGA	1 cut(s)	203
Hpy8I	GTNNAC	1 cut(s)	242
HpyAV	CCTTC	4 cut(s)	136, 160, 255, 261
HpyCH4V	TGCA	2 cut(s)	13, 312
HpyF10VI	GCNNNNNNNGC	1 cut(s)	51
HpyF3I	CTNAG	1 cut(s)	255
Hsp92I	GRCGYC	1 cut(s)	159
Hsp92II	CATG	1 cut(s)	316
Kzo9I	GATC	2 cut(s)	17, 85
LmnI	GCTCC	1 cut(s)	50
LpnPI	CCDG	6 cut(s)	64, 90, 93, 117, 141, 188
Lsp1109I	GCAGC	1 cut(s)	316
LweI	GCATC	1 cut(s)	299
MaeI	CTAG	1 cut(s)	334
MalI	GATC	2 cut(s)	19, 87
MboI	GATC	2 cut(s)	17, 85
MluCI	AATT	4 cut(s)	138, 184, 197, 226
MnlI	CCTC	5 cut(s)	30, 58, 58, 156, 230
Mph1103I	ATGCAT	1 cut(s)	314
MspI	CCGG	1 cut(s)	51
MwoI	GCNNNNNNNGC	1 cut(s)	51
NdeII	GATC	2 cut(s)	17, 85
NlaIII	CATG	1 cut(s)	316
NlaIV	GGNNCC	3 cut(s)	46, 75, 112
NsiI	ATGCAT	1 cut(s)	314
PfeI	GAWTC	1 cut(s)	221
PkrI	GCNGC	2 cut(s)	56, 331
PspN4I	GGNNCC	3 cut(s)	46, 75, 112
PspPI	GGNCC	2 cut(s)	110, 134
SatI	GCNGC	2 cut(s)	55, 330
Sau3AI	GATC	2 cut(s)	17, 85
Sau96I	GGNCC	2 cut(s)	110, 134
SetI	ASST	6 cut(s)	128, 241, 247, 253, 273, 284
SfaNI	GCATC	1 cut(s)	299
SinI	GGWCC	2 cut(s)	110, 134
Sse9I	AATT	4 cut(s)	138, 184, 197, 226
SsiI	CCGC	1 cut(s)	55
SspMI	CTAG	1 cut(s)	334
TaqI	TCGA	2 cut(s)	84, 189
TasI	AATT	4 cut(s)	138, 184, 197, 226
TauI	GCSGC	1 cut(s)	57
TfiI	GAWTC	1 cut(s)	221
TseI	GCWGC	1 cut(s)	329
VpaK11BI	GGWCC	2 cut(s)	110, 134
XapI	RAATTY	2 cut(s)	184, 197
XspI	CTAG	1 cut(s)	334
Zsp2I	ATGCAT	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.