Prupe.2G201500_v2.0.a1
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
N/A
Physical Location & Seq
Reverse (-)
23815459 .. 23815917
459 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G201500.1

Sequence Viewer

Length: 207 bp
ATGAGCAGCAGCGGCGGCACAACAGATGGAGGGGTTTCAGTGCCGATGGGCCTACTACCCGGATTTAGGTTCTCTCCCACCGAAGAGGAACTGCTTTCCTTCTACTTGAAGAAGAAGATAGCGGGCGAGGACTCTGAATTCAGCGACATCATCCCTGAATCAACGTGTGCGAGCGCGAGCCTCGTGATCTGCCTGGTAACCCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

69

Amino Acids

7.16

Weight (kDa)

4.44

Isoelectric Point (pI)

64.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 176
AciI CCGC 3 cut(s) 12, 15, 122
AcsI RAATTY 1 cut(s) 137
AfiI CCNNNNNNNGG 1 cut(s) 66
AflIII ACRYGT 1 cut(s) 164
AgsI TTSAA 1 cut(s) 109
AjnI CCWGG 1 cut(s) 192
AoxI GGCC 1 cut(s) 49
ApeKI GCWGC 2 cut(s) 6, 9
ApoI RAATTY 1 cut(s) 137
AspLEI GCGC 1 cut(s) 176
AspS9I GGNCC 1 cut(s) 49
AsuC2I CCSGG 1 cut(s) 60
BauI CACGAG 1 cut(s) 182
BbvI GCAGC 2 cut(s) 18, 21
BccI CCATC 2 cut(s) 20, 40
BciT130I CCWGG 1 cut(s) 194
BcnI CCSGG 1 cut(s) 60
BisI GCNGC 4 cut(s) 7, 10, 13, 16
BlsI GCNGC 4 cut(s) 8, 11, 14, 17
Bme1390I CCNGG 2 cut(s) 60, 194
BmgT120I GGNCC 1 cut(s) 49
BmrFI CCNGG 2 cut(s) 60, 194
BpuMI CCSGG 1 cut(s) 60
Bsc4I CCNNNNNNNGG 1 cut(s) 66
BseBI CCWGG 1 cut(s) 194
BseGI GGATG 1 cut(s) 150
BseLI CCNNNNNNNGG 1 cut(s) 66
BseXI GCAGC 2 cut(s) 18, 21
Bsh1236I CGCG 1 cut(s) 176
BshFI GGCC 1 cut(s) 51
BsiSI CCGG 1 cut(s) 60
BslI CCNNNNNNNGG 1 cut(s) 66
BsnI GGCC 1 cut(s) 51
Bsp143I GATC 1 cut(s) 186
BspACI CCGC 3 cut(s) 12, 15, 122
BspANI GGCC 1 cut(s) 51
BspFNI CGCG 1 cut(s) 176
BssMI GATC 1 cut(s) 186
BssSI CACGAG 1 cut(s) 182
Bst2BI CACGAG 1 cut(s) 182
Bst2UI CCWGG 1 cut(s) 194
Bst6I CTCTTC 1 cut(s) 78
BstC8I GCNNGC 3 cut(s) 124, 172, 178
BstEII GGTNACC 1 cut(s) 196
BstF5I GGATG 1 cut(s) 150
BstFNI CGCG 1 cut(s) 176
BstHHI GCGC 1 cut(s) 176
BstKTI GATC 1 cut(s) 189
BstMBI GATC 1 cut(s) 186
BstMWI GCNNNNNNNGC 2 cut(s) 12, 15
BstNI CCWGG 1 cut(s) 194
BstPI GGTNACC 1 cut(s) 196
BstSCI CCNGG 2 cut(s) 58, 192
BstUI CGCG 1 cut(s) 176
BstV1I GCAGC 2 cut(s) 18, 21
BsuRI GGCC 1 cut(s) 51
BtsCI GGATG 1 cut(s) 150
BtsIMutI CAGTG 1 cut(s) 45
Cac8I GCNNGC 3 cut(s) 124, 172, 178
CfoI GCGC 1 cut(s) 176
Cfr13I GGNCC 1 cut(s) 49
CviJI RGCY 2 cut(s) 51, 180
CviKI_1 RGCY 2 cut(s) 51, 180
DpnI GATC 1 cut(s) 188
DpnII GATC 1 cut(s) 186
Eam1104I CTCTTC 1 cut(s) 78
EarI CTCTTC 1 cut(s) 78
Eco91I GGTNACC 1 cut(s) 196
EcoO65I GGTNACC 1 cut(s) 196
EcoRI GAATTC 1 cut(s) 137
EcoRII CCWGG 1 cut(s) 192
FauI CCCGC 1 cut(s) 115
Fnu4HI GCNGC 4 cut(s) 7, 10, 13, 16
FokI GGATG 1 cut(s) 137
Fsp4HI GCNGC 4 cut(s) 7, 10, 13, 16
GlaI GCGC 1 cut(s) 175
GluI GCNGC 4 cut(s) 7, 10, 13, 16
HaeIII GGCC 1 cut(s) 51
HapII CCGG 1 cut(s) 60
HhaI GCGC 1 cut(s) 176
Hin6I GCGC 1 cut(s) 174
HinP1I GCGC 1 cut(s) 174
HinfI GANTC 2 cut(s) 131, 158
HpaII CCGG 1 cut(s) 60
Hpy188I TCNGA 1 cut(s) 136
Hpy188III TCNNGA 1 cut(s) 184
HpyAV CCTTC 1 cut(s) 109
HpyCH4IV ACGT 1 cut(s) 164
HpyF10VI GCNNNNNNNGC 2 cut(s) 12, 15
HpySE526I ACGT 1 cut(s) 164
HspAI GCGC 1 cut(s) 174
Kzo9I GATC 1 cut(s) 186
LpnPI CCDG 3 cut(s) 73, 168, 179
Lsp1109I GCAGC 2 cut(s) 18, 21
MaeII ACGT 1 cut(s) 164
MaeIII GTNAC 1 cut(s) 196
MalI GATC 1 cut(s) 188
MboI GATC 1 cut(s) 186
MboII GAAGA 4 cut(s) 95, 121, 124, 127
MluCI AATT 1 cut(s) 137
MlyI GAGTC 1 cut(s) 125
MnlI CCTC 4 cut(s) 23, 79, 121, 191
MseI TTAA 1 cut(s) 205
MspA1I CMGCKG 1 cut(s) 12
MspI CCGG 1 cut(s) 60
MspR9I CCNGG 2 cut(s) 60, 194
MvaI CCWGG 1 cut(s) 194
MvnI CGCG 1 cut(s) 176
MwoI GCNNNNNNNGC 2 cut(s) 12, 15
NciI CCSGG 1 cut(s) 60
NdeII GATC 1 cut(s) 186
PfeI GAWTC 1 cut(s) 158
PkrI GCNGC 4 cut(s) 8, 11, 14, 17
PleI GAGTC 1 cut(s) 125
PpsI GAGTC 1 cut(s) 125
Psp6I CCWGG 1 cut(s) 192
PspEI GGTNACC 1 cut(s) 196
PspGI CCWGG 1 cut(s) 192
PspPI GGNCC 1 cut(s) 49
SaqAI TTAA 1 cut(s) 205
SatI GCNGC 4 cut(s) 7, 10, 13, 16
Sau3AI GATC 1 cut(s) 186
Sau96I GGNCC 1 cut(s) 49
SchI GAGTC 1 cut(s) 125
ScrFI CCNGG 2 cut(s) 60, 194
SetI ASST 2 cut(s) 71, 167
Sse9I AATT 1 cut(s) 137
SsiI CCGC 3 cut(s) 12, 15, 122
StyD4I CCNGG 2 cut(s) 58, 192
TaiI ACGT 1 cut(s) 167
TasI AATT 1 cut(s) 137
TauI GCSGC 2 cut(s) 15, 18
TfiI GAWTC 1 cut(s) 158
Tru1I TTAA 1 cut(s) 205
Tru9I TTAA 1 cut(s) 205
TscAI CASTG 1 cut(s) 45
TseI GCWGC 2 cut(s) 6, 9
TspRI CASTG 1 cut(s) 45
XapI RAATTY 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.