Prupe.3G005500_v2.0.a1

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
N/A
Physical Location & Seq
Forward (+)
325186 .. 326334
1149 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G005500.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 831 bp
ATGAGTGAAAGGGAAAGAGACTATCTTCTTCTTCCTCTGCCTATTACTCTTGTCATCATCTTATGTTTCTCAGCAATTACCCGCGTTGATTGTGAGTGCATAAAAAGGCCGGTCATATTTAACTTTGGTGATTCCAATTCCGATACAGGTGGTTTTTTCGATGGACTTGGAATTAATTTTGGACCTCCTAATGTACATATTTTCTACCATCATCATTACCACCATCACCACCACCACCACGAGCATCGTGAGCCAGCAGGCCAATTATGTGATGGACGATTAATAATTAATTTTCTTTGTGCAAGTTTGCAAACCCATTATTTGACCCCATATCTTGAATATTTGGGGCCAAATTTCTCAGACGGAGCTAACTTTGCAATCAGTGGTTCATCCACTCTTCCTAGACATCTGCCCTTTAGTTTGGACGTTCAATATATATACCAACATGGTGGTATATATTTTTGGGTGCACAATACTGGACCGCTGGGTTGCTTACCCCAAAAGCTTGCCGGAACTGCCTCAAACGCCGGAAATTTTGATGACCATGGCTGCCTCAAGTTTCTCAGTGACGCTGCAAAAGCATTTAACAAGCAATTGCACACTCTGTGTGAAGAACACAGATCACAAATGGGGAGGGCTATTATTGTGTACGTGGATATATATGCCATCAAATACGACCTCATAGCCAATTCAGCTAAATATGGATCAAAGTTCATAAGCTGGGATGGAGTTCACTATACCGAAGCCGCCAACAAAAATTTTGCCTCGAAAATACTGTCTACTAATTATTCCACTCCTCCAATAAAGTTGGACTATTTCTGCAATGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

277

Amino Acids

31.11

Weight (kDa)

6.56

Isoelectric Point (pI)

36.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 779
AccII CGCG 1 cut(s) 84
AciI CCGC 3 cut(s) 82, 482, 747
AclWI GGATC 1 cut(s) 712
AcsI RAATTY 3 cut(s) 352, 532, 757
AdeI CACNNNGTG 1 cut(s) 606
AfaI GTAC 2 cut(s) 195, 650
AgsI TTSAA 2 cut(s) 338, 431
AluBI AGCT 4 cut(s) 368, 505, 695, 720
AluI AGCT 4 cut(s) 368, 505, 695, 720
Alw21I GWGCWC 1 cut(s) 471
Alw26I GTCTC 1 cut(s) 12
Alw44I GTGCAC 1 cut(s) 467
AlwI GGATC 1 cut(s) 712
AoxI GGCC 3 cut(s) 107, 259, 347
ApaLI GTGCAC 1 cut(s) 467
ApeKI GCWGC 2 cut(s) 549, 572
ApoI RAATTY 3 cut(s) 352, 532, 757
ArsI GACNNNNNNTTYG 2 cut(s) 761, 793
AseI ATTAAT 3 cut(s) 174, 281, 288
AspS9I GGNCC 3 cut(s) 182, 347, 479
AsuHPI GGTGA 2 cut(s) 140, 218
AvaII GGWCC 2 cut(s) 182, 479
BaeGI GKGCMC 1 cut(s) 471
BauI CACGAG 1 cut(s) 239
Bbv12I GWGCWC 1 cut(s) 471
BbvI GCAGC 2 cut(s) 536, 559
BccI CCATC 6 cut(s) 155, 216, 231, 266, 674, 719
BcoDI GTCTC 1 cut(s) 12
BfaI CTAG 1 cut(s) 402
BisI GCNGC 3 cut(s) 550, 573, 747
BlsI GCNGC 3 cut(s) 551, 574, 748
Bme18I GGWCC 2 cut(s) 182, 479
BmgT120I GGNCC 3 cut(s) 182, 347, 479
BmiI GGNNCC 1 cut(s) 348
BmsI GCATC 1 cut(s) 253
BpuEI CTTGAG 1 cut(s) 539
BsaAI YACGTR 1 cut(s) 652
BsaJI CCNNGG 1 cut(s) 544
Bse118I RCCGGY 1 cut(s) 109
Bse1I ACTGG 1 cut(s) 481
Bse3DI GCAATG 1 cut(s) 829
BseDI CCNNGG 1 cut(s) 544
BseGI GGATG 2 cut(s) 389, 730
BseMI GCAATG 1 cut(s) 829
BseMII CTCAG 3 cut(s) 84, 372, 577
BseNI ACTGG 1 cut(s) 481
BseRI GAGGAG 1 cut(s) 786
BseSI GKGCMC 1 cut(s) 471
BseXI GCAGC 2 cut(s) 536, 559
BseYI CCCAGC 2 cut(s) 484, 720
Bsh1236I CGCG 1 cut(s) 84
BshFI GGCC 3 cut(s) 109, 261, 349
BsiHKAI GWGCWC 1 cut(s) 471
BsiSI CCGG 3 cut(s) 110, 510, 528
BsmAI GTCTC 1 cut(s) 12
BsnI GGCC 3 cut(s) 109, 261, 349
Bsp1286I GDGCHC 1 cut(s) 471
Bsp1407I TGTACA 1 cut(s) 193
Bsp143I GATC 2 cut(s) 620, 704
Bsp19I CCATGG 1 cut(s) 544
BspACI CCGC 3 cut(s) 82, 482, 747
BspANI GGCC 3 cut(s) 109, 261, 349
BspCNI CTCAG 3 cut(s) 83, 371, 576
BspFNI CGCG 1 cut(s) 84
BspLI GGNNCC 1 cut(s) 348
BspPI GGATC 1 cut(s) 712
BsrDI GCAATG 1 cut(s) 829
BsrFI RCCGGY 1 cut(s) 109
BsrGI TGTACA 1 cut(s) 193
BsrI ACTGG 1 cut(s) 481
BssAI RCCGGY 1 cut(s) 109
BssECI CCNNGG 1 cut(s) 544
BssMI GATC 2 cut(s) 620, 704
BssSI CACGAG 1 cut(s) 239
BssT1I CCWWGG 1 cut(s) 544
Bst2BI CACGAG 1 cut(s) 239
Bst4CI ACNGT 1 cut(s) 777
Bst6I CTCTTC 1 cut(s) 402
BstAUI TGTACA 1 cut(s) 193
BstBAI YACGTR 1 cut(s) 652
BstC8I GCNNGC 3 cut(s) 255, 259, 507
BstDEI CTNAG 3 cut(s) 70, 358, 563
BstDSI CCRYGG 1 cut(s) 544
BstF5I GGATG 2 cut(s) 389, 730
BstFNI CGCG 1 cut(s) 84
BstKTI GATC 2 cut(s) 623, 707
BstMAI GTCTC 1 cut(s) 12
BstMBI GATC 2 cut(s) 620, 704
BstMWI GCNNNNNNNGC 6 cut(s) 250, 374, 515, 524, 578, 692
BstSLI GKGCMC 1 cut(s) 471
BstUI CGCG 1 cut(s) 84
BstV1I GCAGC 2 cut(s) 536, 559
BstXI CCANNNNNNTGG 1 cut(s) 449
BsuRI GGCC 3 cut(s) 109, 261, 349
BtgI CCRYGG 1 cut(s) 544
BtsCI GGATG 2 cut(s) 389, 730
BtsIMutI CAGTG 2 cut(s) 388, 571
Cac8I GCNNGC 3 cut(s) 255, 259, 507
Cfr10I RCCGGY 1 cut(s) 109
Cfr13I GGNCC 3 cut(s) 182, 347, 479
CseI GACGC 1 cut(s) 578
Csp6I GTAC 2 cut(s) 194, 649
CviAII CATG 2 cut(s) 446, 545
CviQI GTAC 2 cut(s) 194, 649
DdeI CTNAG 3 cut(s) 70, 358, 563
DpnI GATC 2 cut(s) 622, 706
DpnII GATC 2 cut(s) 620, 704
DraIII CACNNNGTG 1 cut(s) 606
Eam1104I CTCTTC 1 cut(s) 402
EarI CTCTTC 1 cut(s) 402
Eco130I CCWWGG 1 cut(s) 544
Eco47I GGWCC 2 cut(s) 182, 479
EcoT14I CCWWGG 1 cut(s) 544
ErhI CCWWGG 1 cut(s) 544
FaeI CATG 2 cut(s) 449, 548
FatI CATG 2 cut(s) 445, 544
FauI CCCGC 1 cut(s) 89
FblI GTMKAC 1 cut(s) 779
Fnu4HI GCNGC 3 cut(s) 550, 573, 747
FokI GGATG 2 cut(s) 376, 737
Fsp4HI GCNGC 3 cut(s) 550, 573, 747
FspBI CTAG 1 cut(s) 402
GluI GCNGC 3 cut(s) 550, 573, 747
GsaI CCCAGC 2 cut(s) 488, 724
HaeIII GGCC 3 cut(s) 109, 261, 349
HapII CCGG 3 cut(s) 110, 510, 528
HgaI GACGC 1 cut(s) 578
Hin1II CATG 2 cut(s) 449, 548
HindIII AAGCTT 1 cut(s) 503
HinfI GANTC 1 cut(s) 131
HpaII CCGG 3 cut(s) 110, 510, 528
HphI GGTGA 2 cut(s) 140, 218
Hpy166II GTNNAC 4 cut(s) 469, 649, 733, 780
Hpy188I TCNGA 2 cut(s) 142, 361
Hpy188III TCNNGA 2 cut(s) 248, 335
Hpy8I GTNNAC 4 cut(s) 469, 649, 733, 780
HpyCH4III ACNGT 1 cut(s) 777
HpyCH4IV ACGT 2 cut(s) 426, 651
HpyCH4V TGCA 8 cut(s) 99, 302, 310, 377, 469, 575, 598, 822
HpyF10VI GCNNNNNNNGC 6 cut(s) 250, 374, 515, 524, 578, 692
HpyF3I CTNAG 3 cut(s) 70, 358, 563
HpySE526I ACGT 2 cut(s) 426, 651
Hsp92II CATG 2 cut(s) 449, 548
Kzo9I GATC 2 cut(s) 620, 704
LmnI GCTCC 1 cut(s) 365
LpnPI CCDG 9 cut(s) 123, 132, 243, 267, 462, 470, 523, 541, 706
Lsp1109I GCAGC 2 cut(s) 536, 559
LweI GCATC 1 cut(s) 253
MaeI CTAG 1 cut(s) 402
MaeII ACGT 2 cut(s) 426, 651
MaeIII GTNAC 1 cut(s) 566
MalI GATC 2 cut(s) 622, 706
MboI GATC 2 cut(s) 620, 704
MboII GAAGA 5 cut(s) 17, 20, 23, 389, 623
MfeI CAATTG 1 cut(s) 593
MhlI GDGCHC 1 cut(s) 471
MmeI TCCRAC 1 cut(s) 789
MnlI CCTC 8 cut(s) 45, 195, 529, 563, 627, 689, 775, 807
MseI TTAA 5 cut(s) 120, 174, 281, 288, 585
MspA1I CMGCKG 1 cut(s) 484
MspI CCGG 3 cut(s) 110, 510, 528
MunI CAATTG 1 cut(s) 593
MvnI CGCG 1 cut(s) 84
MwoI GCNNNNNNNGC 6 cut(s) 250, 374, 515, 524, 578, 692
NcoI CCATGG 1 cut(s) 544
NdeII GATC 2 cut(s) 620, 704
NlaIII CATG 2 cut(s) 449, 548
NlaIV GGNNCC 1 cut(s) 348
NmuCI GTSAC 1 cut(s) 566
PfeI GAWTC 1 cut(s) 131
PkrI GCNGC 3 cut(s) 551, 574, 748
Ppu21I YACGTR 1 cut(s) 652
PshBI ATTAAT 3 cut(s) 174, 281, 288
PspFI CCCAGC 2 cut(s) 484, 720
PspN4I GGNNCC 1 cut(s) 348
PspPI GGNCC 3 cut(s) 182, 347, 479
RsaI GTAC 2 cut(s) 195, 650
RsaNI GTAC 2 cut(s) 194, 649
SaqAI TTAA 5 cut(s) 120, 174, 281, 288, 585
SatI GCNGC 3 cut(s) 550, 573, 747
Sau3AI GATC 2 cut(s) 620, 704
Sau96I GGNCC 3 cut(s) 182, 347, 479
SduI GDGCHC 1 cut(s) 471
SetI ASST 9 cut(s) 151, 187, 370, 429, 507, 654, 681, 697, 722
SfaNI GCATC 1 cut(s) 253
SinI GGWCC 2 cut(s) 182, 479
SmlI CTYRAG 1 cut(s) 554
SmoI CTYRAG 1 cut(s) 554
SsiI CCGC 3 cut(s) 82, 482, 747
SspI AATATT 1 cut(s) 341
SspMI CTAG 1 cut(s) 402
StyI CCWWGG 1 cut(s) 544
TaaI ACNGT 1 cut(s) 777
TaiI ACGT 2 cut(s) 429, 654
TaqI TCGA 2 cut(s) 159, 767
TatI WGTACW 1 cut(s) 193
TauI GCSGC 1 cut(s) 749
TfiI GAWTC 1 cut(s) 131
Tru1I TTAA 5 cut(s) 120, 174, 281, 288, 585
Tru9I TTAA 5 cut(s) 120, 174, 281, 288, 585
TscAI CASTG 2 cut(s) 388, 571
TseFI GTSAC 1 cut(s) 566
TseI GCWGC 2 cut(s) 549, 572
Tsp45I GTSAC 1 cut(s) 566
TspDTI ATGAA 2 cut(s) 378, 703
TspGWI ACGGA 1 cut(s) 378
TspRI CASTG 2 cut(s) 388, 571
VneI GTGCAC 1 cut(s) 467
VpaK11BI GGWCC 2 cut(s) 182, 479
VspI ATTAAT 3 cut(s) 174, 281, 288
XapI RAATTY 3 cut(s) 352, 532, 757
XcmI CCANNNNNNNNNTGG 1 cut(s) 269
XmiI GTMKAC 1 cut(s) 779
XspI CTAG 1 cut(s) 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.