Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

344737 .. 349155

Gene Structure 4419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G005800.1_v2.0.a1.CDS.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGCATGAATTGGCTTACAAGACTGACGGCATAAGTTATATCCGGTCTAGTAATGGTGAGATATATAAGCTTACCCACCAGTCTTTGGTAGTAACTTTTATCACTAAAAGGCTCTCCTTCCAAGTCCAACTTCTATTTGCTATCAAGAGGTGCACAGAACAGAAGATATGGAAAGTCATTAAAGAAAACAAAGATCTTGATCTTCCTGCTCACGAGGTCATGGTGGTTACTGTACGTTGTAAAAAGATTGCCAATGAGAAGTATGATGCACAGGCTACATATTTTGATGAAGGTGTCAGAACTAGGAAGCGTGAGCAGCTTGAAGAAAAATTGCTGCAACTTGTCCAACCTGCGTTCCAAGCTTTGCTGGGACATATAAGATCTGGTTCTCTGGATAAGTTCAAGGGAGCATTTGATAAGACCTTGAACGGTGAGGAGGCATTTTCAGTGGCTGCTTGTAATTGCTCTGAGTCATTTATGGCTCTATTTGATGAAGGATGTGCAGCAAACTGGGACACATCTAAAGTAAGGGATCAACTTAAACGCGATATAGAAGCCCATATTGCTTCAGTTTGTGCCGCCAAGCTATCTGAACTTACTGCACTTTATGAGGAAGAATTTGAGTGGAAGAAGAAACTAAAAGGGAATAAGAAAAATTGGAGGATGCCTTATCAAGACCGGTTGGAAGCCCTTCTAGATGGAGTTAATGGTGAAACCTGGCCTTCAATAAGAAATCTTTTCCGGCGTGAGACAGAATCAGCTGTCTCTGGGATCTCTAGTGCATCTTCGGGTTTTGATATGGATGAACAATCCAAGGGCAAAACACTTACAAGTCTGGAGGCATATGCAATAGTCCGTTTGGAGGACTATGCTGCTGATAATATTGAGAATACTTTATCCCTTGCCTTGATGGCTTCCACAAATGCTGCTGCTGAAGATAGGAGTATCACAACAGCTGACCCACTGGCTTCAAGCACTTGGCAAGAGGTTTCCTCCTCAAAAACATTGATCAAACCTGTCGAGTGCAAATCCTTGTGGAGGCAATTCAAGCGATGGAGTGAACACAGTGTTTCTATGGCTGTTACTGCACAAGTTGGCATAGATTCAAAATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000902 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005886 GO:0006810 GO:0006888 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009832 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0017076 GO:0019001 GO:0022622 GO:0030029 GO:0030036 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032989 GO:0035639 GO:0036094 GO:0040007 GO:0042546 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060560 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0090558 GO:0090627 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:0099402 GO:1901265 GO:1901363 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RHD3

Protein Analysis

372

Amino Acids

41.9

Weight (kDa)

6.63

Isoelectric Point (pI)

46.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	358
AccB7I	CCANNNNNTGG	1 cut(s)	85
AccII	CGCG	1 cut(s)	546
AciI	CCGC	1 cut(s)	579
AclWI	GGATC	2 cut(s)	540, 779
AcsI	RAATTY	2 cut(s)	617, 1109
AcuI	CTGAAG	2 cut(s)	552, 954
AfaI	GTAC	1 cut(s)	234
AfiI	CCNNNNNNNGG	3 cut(s)	85, 862, 1038
AgeI	ACCGGT	1 cut(s)	678
AgsI	TTSAA	7 cut(s)	323, 403, 427, 726, 972, 1048, 1107
AjnI	CCWGG	1 cut(s)	716
AjuI	GAANNNNNNNTTGG	2 cut(s)	114, 146
AluBI	AGCT	6 cut(s)	70, 319, 362, 586, 761, 956
AluI	AGCT	6 cut(s)	70, 319, 362, 586, 761, 956
Alw21I	GWGCWC	1 cut(s)	155
Alw26I	GTCTC	2 cut(s)	743, 769
Alw44I	GTGCAC	1 cut(s)	151
AlwI	GGATC	2 cut(s)	540, 779
AlwNI	CAGNNNCTG	1 cut(s)	452
AoxI	GGCC	1 cut(s)	719
ApaLI	GTGCAC	1 cut(s)	151
ApeKI	GCWGC	7 cut(s)	316, 334, 452, 503, 872, 926, 929
ApoI	RAATTY	2 cut(s)	617, 1109
AsiGI	ACCGGT	1 cut(s)	678
Asp700I	GAANNNNTTC	1 cut(s)	690
AsuHPI	GGTGA	3 cut(s)	68, 443, 722
BaeGI	GKGCMC	1 cut(s)	155
BauI	CACGAG	1 cut(s)	212
Bbv12I	GWGCWC	1 cut(s)	155
BbvI	GCAGC	7 cut(s)	321, 328, 439, 515, 859, 913, 916
BccI	CCATC	3 cut(s)	692, 904, 1047
BceAI	ACGGC	1 cut(s)	43
BciT130I	CCWGG	1 cut(s)	718
BclI	TGATCA	1 cut(s)	1008
BcoDI	GTCTC	2 cut(s)	743, 769
BfaI	CTAG	4 cut(s)	48, 303, 695, 777
BfuAI	ACCTGC	1 cut(s)	358
BglI	GCCNNNNNGGC	1 cut(s)	911
BglII	AGATCT	2 cut(s)	193, 380
BisI	GCNGC	8 cut(s)	317, 335, 453, 504, 579, 873, 927, 930
BlsI	GCNGC	8 cut(s)	318, 336, 454, 505, 580, 874, 928, 931
Bme1390I	CCNGG	1 cut(s)	718
BmrFI	CCNGG	1 cut(s)	718
BmrI	ACTGGG	1 cut(s)	520
BmsI	GCATC	3 cut(s)	256, 654, 791
BmuI	ACTGGG	1 cut(s)	520
BplI	GAGNNNNNCTC	2 cut(s)	977, 1009
BpmI	CTGGAG	1 cut(s)	857
BsaBI	GATNNNNATC	1 cut(s)	198
BsaJI	CCNNGG	1 cut(s)	813
BsaWI	WCCGGW	2 cut(s)	42, 678
Bsc4I	CCNNNNNNNGG	3 cut(s)	85, 862, 1038
Bse118I	RCCGGY	1 cut(s)	678
Bse1I	ACTGG	3 cut(s)	79, 515, 969
Bse8I	GATNNNNATC	1 cut(s)	198
BseBI	CCWGG	1 cut(s)	718
BseDI	CCNNGG	1 cut(s)	813
BseGI	GGATG	3 cut(s)	503, 669, 808
BseJI	GATNNNNATC	1 cut(s)	198
BseLI	CCNNNNNNNGG	3 cut(s)	85, 862, 1038
BseMII	CTCAG	1 cut(s)	459
BseNI	ACTGG	3 cut(s)	79, 515, 969
BseRI	GAGGAG	2 cut(s)	449, 985
BseSI	GKGCMC	1 cut(s)	155
BseXI	GCAGC	7 cut(s)	321, 328, 439, 515, 859, 913, 916
BseYI	CCCAGC	1 cut(s)	367
BsgI	GTGCAG	3 cut(s)	522, 585, 1071
Bsh1236I	CGCG	1 cut(s)	546
BshFI	GGCC	1 cut(s)	721
BshTI	ACCGGT	1 cut(s)	678
BsiHKAI	GWGCWC	1 cut(s)	155
BsiSI	CCGG	3 cut(s)	43, 679, 742
BslFI	GGGAC	2 cut(s)	384, 527
BslI	CCNNNNNNNGG	3 cut(s)	85, 862, 1038
BsmAI	GTCTC	2 cut(s)	743, 769
BsmFI	GGGAC	2 cut(s)	384, 527
BsnI	GGCC	1 cut(s)	721
Bsp1286I	GDGCHC	1 cut(s)	155
Bsp143I	GATC	6 cut(s)	193, 199, 380, 532, 771, 1008
BspACI	CCGC	1 cut(s)	579
BspANI	GGCC	1 cut(s)	721
BspCNI	CTCAG	1 cut(s)	460
BspFNI	CGCG	1 cut(s)	546
BspMI	ACCTGC	1 cut(s)	358
BspPI	GGATC	2 cut(s)	540, 779
BsrFI	RCCGGY	1 cut(s)	678
BsrI	ACTGG	3 cut(s)	79, 515, 969
BssAI	RCCGGY	1 cut(s)	678
BssECI	CCNNGG	1 cut(s)	813
BssMI	GATC	6 cut(s)	193, 199, 380, 532, 771, 1008
BssSI	CACGAG	1 cut(s)	212
BssT1I	CCWWGG	1 cut(s)	813
Bst2BI	CACGAG	1 cut(s)	212
Bst2UI	CCWGG	1 cut(s)	718
Bst4CI	ACNGT	3 cut(s)	232, 431, 1067
BstDEI	CTNAG	1 cut(s)	468
BstENI	CCTNNNNNAGG	1 cut(s)	1036
BstF5I	GGATG	3 cut(s)	503, 669, 808
BstFNI	CGCG	1 cut(s)	546
BstKTI	GATC	6 cut(s)	196, 202, 383, 535, 774, 1011
BstMAI	GTCTC	2 cut(s)	743, 769
BstMBI	GATC	6 cut(s)	193, 199, 380, 532, 771, 1008
BstMWI	GCNNNNNNNGC	6 cut(s)	316, 359, 563, 911, 1048, 1085
BstNI	CCWGG	1 cut(s)	718
BstSCI	CCNGG	1 cut(s)	716
BstSLI	GKGCMC	1 cut(s)	155
BstUI	CGCG	1 cut(s)	546
BstV1I	GCAGC	7 cut(s)	321, 328, 439, 515, 859, 913, 916
BstX2I	RGATCY	3 cut(s)	193, 380, 771
BstYI	RGATCY	3 cut(s)	193, 380, 771
BsuRI	GGCC	1 cut(s)	721
BtgZI	GCGATG	1 cut(s)	1066
BtsCI	GGATG	3 cut(s)	503, 669, 808
BtsIMutI	CAGTG	3 cut(s)	453, 962, 1072
BveI	ACCTGC	1 cut(s)	358
CaiI	CAGNNNCTG	1 cut(s)	452
Cfr10I	RCCGGY	1 cut(s)	678
Csp6I	GTAC	1 cut(s)	233
CspAI	ACCGGT	1 cut(s)	678
CviAII	CATG	2 cut(s)	5, 220
CviQI	GTAC	1 cut(s)	233
DdeI	CTNAG	1 cut(s)	468
DpnI	GATC	6 cut(s)	195, 201, 382, 534, 773, 1010
DpnII	GATC	6 cut(s)	193, 199, 380, 532, 771, 1008
Eco130I	CCWWGG	1 cut(s)	813
Eco57I	CTGAAG	2 cut(s)	552, 954
EcoNI	CCTNNNNNAGG	1 cut(s)	1036
EcoRII	CCWGG	1 cut(s)	716
EcoT14I	CCWWGG	1 cut(s)	813
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	813
FaeI	CATG	2 cut(s)	8, 223
FalI	AAGNNNNNCTT	2 cut(s)	114, 146
FaqI	GGGAC	2 cut(s)	384, 527
FatI	CATG	2 cut(s)	4, 219
FauNDI	CATATG	1 cut(s)	844
FbaI	TGATCA	1 cut(s)	1008
Fnu4HI	GCNGC	8 cut(s)	317, 335, 453, 504, 579, 873, 927, 930
FokI	GGATG	3 cut(s)	510, 676, 815
Fsp4HI	GCNGC	8 cut(s)	317, 335, 453, 504, 579, 873, 927, 930
FspBI	CTAG	4 cut(s)	48, 303, 695, 777
GluI	GCNGC	8 cut(s)	317, 335, 453, 504, 579, 873, 927, 930
GsaI	CCCAGC	1 cut(s)	371
GsuI	CTGGAG	1 cut(s)	857
HaeIII	GGCC	1 cut(s)	721
HapII	CCGG	3 cut(s)	43, 679, 742
Hin1II	CATG	2 cut(s)	8, 223
HindIII	AAGCTT	2 cut(s)	68, 360
HinfI	GANTC	3 cut(s)	470, 755, 1103
HpaII	CCGG	3 cut(s)	43, 679, 742
HphI	GGTGA	3 cut(s)	68, 443, 722
Hpy166II	GTNNAC	2 cut(s)	153, 1061
Hpy188I	TCNGA	3 cut(s)	299, 469, 592
Hpy188III	TCNNGA	7 cut(s)	145, 197, 212, 392, 674, 695, 836
Hpy8I	GTNNAC	2 cut(s)	153, 1061
HpyAV	CCTTC	5 cut(s)	127, 284, 488, 701, 732
HpyCH4III	ACNGT	3 cut(s)	232, 431, 1067
HpyCH4IV	ACGT	1 cut(s)	235
HpyF10VI	GCNNNNNNNGC	6 cut(s)	316, 359, 563, 911, 1048, 1085
HpyF3I	CTNAG	1 cut(s)	468
HpySE526I	ACGT	1 cut(s)	235
Hsp92II	CATG	2 cut(s)	8, 223
Ksp22I	TGATCA	1 cut(s)	1008
Kzo9I	GATC	6 cut(s)	193, 199, 380, 532, 771, 1008
LmnI	GCTCC	1 cut(s)	407
Lsp1109I	GCAGC	7 cut(s)	321, 328, 439, 515, 859, 913, 916
LweI	GCATC	3 cut(s)	256, 654, 791
MaeI	CTAG	4 cut(s)	48, 303, 695, 777
MaeII	ACGT	1 cut(s)	235
MaeIII	GTNAC	3 cut(s)	91, 226, 1081
MalI	GATC	6 cut(s)	195, 201, 382, 534, 773, 1010
MboI	GATC	6 cut(s)	193, 199, 380, 532, 771, 1008
MboII	GAAGA	8 cut(s)	175, 194, 335, 626, 640, 643, 777, 947
MflI	RGATCY	3 cut(s)	193, 380, 771
MhlI	GDGCHC	1 cut(s)	155
MluCI	AATT	7 cut(s)	8, 329, 460, 617, 655, 1043, 1109
MlyI	GAGTC	1 cut(s)	479
MmeI	TCCRAC	3 cut(s)	151, 370, 663
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	690
MseI	TTAA	3 cut(s)	180, 540, 705
MspA1I	CMGCKG	2 cut(s)	761, 956
MspI	CCGG	3 cut(s)	43, 679, 742
MspR9I	CCNGG	1 cut(s)	718
MvaI	CCWGG	1 cut(s)	718
MvnI	CGCG	1 cut(s)	546
MwoI	GCNNNNNNNGC	6 cut(s)	316, 359, 563, 911, 1048, 1085
NdeI	CATATG	1 cut(s)	844
NdeII	GATC	6 cut(s)	193, 199, 380, 532, 771, 1008
NlaIII	CATG	2 cut(s)	8, 223
NsiI	ATGCAT	1 cut(s)	6
PdmI	GAANNNNTTC	1 cut(s)	690
PfeI	GAWTC	2 cut(s)	755, 1103
PflMI	CCANNNNNTGG	1 cut(s)	85
PinAI	ACCGGT	1 cut(s)	678
PkrI	GCNGC	8 cut(s)	318, 336, 454, 505, 580, 874, 928, 931
PleI	GAGTC	1 cut(s)	478
PpsI	GAGTC	1 cut(s)	478
Psp6I	CCWGG	1 cut(s)	716
PspFI	CCCAGC	1 cut(s)	367
PspGI	CCWGG	1 cut(s)	716
PstNI	CAGNNNCTG	1 cut(s)	452
PsuI	RGATCY	3 cut(s)	193, 380, 771
PvuII	CAGCTG	2 cut(s)	761, 956
RsaI	GTAC	1 cut(s)	234
RsaNI	GTAC	1 cut(s)	233
SaqAI	TTAA	3 cut(s)	180, 540, 705
SatI	GCNGC	8 cut(s)	317, 335, 453, 504, 579, 873, 927, 930
Sau3AI	GATC	6 cut(s)	193, 199, 380, 532, 771, 1008
SchI	GAGTC	1 cut(s)	479
ScrFI	CCNGG	1 cut(s)	718
SduI	GDGCHC	1 cut(s)	155
SfaNI	GCATC	3 cut(s)	256, 654, 791
Sse9I	AATT	7 cut(s)	8, 329, 460, 617, 655, 1043, 1109
SsiI	CCGC	1 cut(s)	579
SspI	AATATT	1 cut(s)	883
SspMI	CTAG	4 cut(s)	48, 303, 695, 777
StyD4I	CCNGG	1 cut(s)	716
StyI	CCWWGG	1 cut(s)	813
TaaI	ACNGT	3 cut(s)	232, 431, 1067
TaiI	ACGT	1 cut(s)	238
TaqI	TCGA	1 cut(s)	1020
TasI	AATT	7 cut(s)	8, 329, 460, 617, 655, 1043, 1109
TauI	GCSGC	1 cut(s)	581
TfiI	GAWTC	2 cut(s)	755, 1103
Tru1I	TTAA	3 cut(s)	180, 540, 705
Tru9I	TTAA	3 cut(s)	180, 540, 705
TscAI	CASTG	3 cut(s)	453, 969, 1072
TseI	GCWGC	7 cut(s)	316, 334, 452, 503, 872, 926, 929
TspDTI	ATGAA	4 cut(s)	21, 303, 507, 819
TspGWI	ACGGA	1 cut(s)	845
TspRI	CASTG	3 cut(s)	453, 969, 1072
Van91I	CCANNNNNTGG	1 cut(s)	85
VneI	GTGCAC	1 cut(s)	151
XagI	CCTNNNNNAGG	1 cut(s)	1036
XapI	RAATTY	2 cut(s)	617, 1109
XbaI	TCTAGA	1 cut(s)	694
XmnI	GAANNNNTTC	1 cut(s)	690
XspI	CTAG	4 cut(s)	48, 303, 695, 777
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.