Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

386105 .. 387852

Gene Structure 1748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G006400.1_v2.0.a1.CDS.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGCCATCCTCAAAAAAGAAGAAAAGTACACCAAATGATACTAGTGTCAAGCCTGAAGCTCTGAAACGCATGTTGACTAATGAGGAGAAGGCTAAACTGACCATGGAGTTGGAGGCTTTGATGGACGCAGAAGTGCCTCTAAATATTGTTAATTTCCTACAAGAGCACAGTCATAGTGAAGGGCAAACCAATGATGATGAGATCGAGGTTGACCTTGAAGCTTTTAGTGATGATACCTTGTTTACTTTACGGAAGCTTTTGGATGACCATCTGCTGGAGAAACAGAAAAGGCAGGCGAAAGCTGAACCTTGTGAAATGGAGATTCTTAATGAGTCAGGAAGGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0008150 GO:0009266 GO:0009267 GO:0009409 GO:0009605 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0033993 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051365 GO:0051716 GO:0060255 GO:0065007 GO:0071496 GO:0080090 GO:0097305 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

116

Amino Acids

13.14

Weight (kDa)

4.81

Isoelectric Point (pI)

43.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	274
AcuI	CTGAAG	1 cut(s)	75
AfaI	GTAC	1 cut(s)	28
AfiI	CCNNNNNNNGG	1 cut(s)	274
AgsI	TTSAA	1 cut(s)	218
AhlI	ACTAGT	1 cut(s)	41
AluBI	AGCT	4 cut(s)	59, 221, 256, 302
AluI	AGCT	4 cut(s)	59, 221, 256, 302
Alw21I	GWGCWC	1 cut(s)	168
BaeI	ACNNNNGTAYC	2 cut(s)	30, 63
Bbv12I	GWGCWC	1 cut(s)	168
BccI	CCATC	3 cut(s)	13, 115, 276
BcuI	ACTAGT	1 cut(s)	41
BfaI	CTAG	1 cut(s)	42
BpmI	CTGGAG	1 cut(s)	296
BsaBI	GATNNNNATC	1 cut(s)	267
BsaJI	CCNNGG	1 cut(s)	102
Bsc4I	CCNNNNNNNGG	1 cut(s)	274
Bse8I	GATNNNNATC	1 cut(s)	267
BseDI	CCNNGG	1 cut(s)	102
BseGI	GGATG	2 cut(s)	5, 268
BseJI	GATNNNNATC	1 cut(s)	267
BseLI	CCNNNNNNNGG	1 cut(s)	274
BseRI	GAGGAG	1 cut(s)	98
BsiHKAI	GWGCWC	1 cut(s)	168
BslI	CCNNNNNNNGG	1 cut(s)	274
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp143I	GATC	1 cut(s)	201
Bsp19I	CCATGG	1 cut(s)	102
BssECI	CCNNGG	1 cut(s)	102
BssMI	GATC	1 cut(s)	201
BssT1I	CCWWGG	1 cut(s)	102
Bst4CI	ACNGT	1 cut(s)	170
BstC8I	GCNNGC	1 cut(s)	294
BstDSI	CCRYGG	1 cut(s)	102
BstF5I	GGATG	2 cut(s)	5, 268
BstKTI	GATC	1 cut(s)	204
BstMBI	GATC	1 cut(s)	201
BstNSI	RCATGY	1 cut(s)	73
BstXI	CCANNNNNNTGG	1 cut(s)	109
BtgI	CCRYGG	1 cut(s)	102
BtsCI	GGATG	2 cut(s)	5, 268
Cac8I	GCNNGC	1 cut(s)	294
CseI	GACGC	1 cut(s)	134
Csp6I	GTAC	1 cut(s)	27
CviAII	CATG	2 cut(s)	70, 103
CviJI	RGCY	7 cut(s)	52, 59, 92, 116, 221, 256, 302
CviKI_1	RGCY	7 cut(s)	52, 59, 92, 116, 221, 256, 302
CviQI	GTAC	1 cut(s)	27
DpnI	GATC	1 cut(s)	203
DpnII	GATC	1 cut(s)	201
Eco130I	CCWWGG	1 cut(s)	102
Eco57I	CTGAAG	1 cut(s)	75
EcoT14I	CCWWGG	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	102
FaeI	CATG	2 cut(s)	73, 106
FaiI	YATR	3 cut(s)	71, 104, 174
FatI	CATG	2 cut(s)	69, 102
FokI	GGATG	1 cut(s)	275
FspBI	CTAG	1 cut(s)	42
GsuI	CTGGAG	1 cut(s)	296
HgaI	GACGC	1 cut(s)	134
Hin1II	CATG	2 cut(s)	73, 106
HincII	GTYRAC	2 cut(s)	75, 211
HindII	GTYRAC	2 cut(s)	75, 211
HindIII	AAGCTT	2 cut(s)	219, 254
HinfI	GANTC	2 cut(s)	322, 332
Hpy166II	GTNNAC	4 cut(s)	29, 75, 211, 243
Hpy188I	TCNGA	1 cut(s)	63
Hpy188III	TCNNGA	1 cut(s)	336
Hpy8I	GTNNAC	4 cut(s)	29, 75, 211, 243
HpyAV	CCTTC	3 cut(s)	82, 173, 333
HpyCH4III	ACNGT	1 cut(s)	170
Hsp92II	CATG	2 cut(s)	73, 106
Kzo9I	GATC	1 cut(s)	201
LpnPI	CCDG	4 cut(s)	66, 260, 278, 321
MaeI	CTAG	1 cut(s)	42
MalI	GATC	1 cut(s)	203
MboI	GATC	1 cut(s)	201
MboII	GAAGA	1 cut(s)	31
MhlI	GDGCHC	1 cut(s)	168
MluCI	AATT	1 cut(s)	151
MlyI	GAGTC	1 cut(s)	341
MmeI	TCCRAC	1 cut(s)	90
MnlI	CCTC	5 cut(s)	19, 76, 106, 147, 199
MseI	TTAA	2 cut(s)	150, 327
NcoI	CCATGG	1 cut(s)	102
NdeII	GATC	1 cut(s)	201
NlaIII	CATG	2 cut(s)	73, 106
NspI	RCATGY	1 cut(s)	73
PfeI	GAWTC	1 cut(s)	322
PflMI	CCANNNNNTGG	1 cut(s)	274
PleI	GAGTC	1 cut(s)	340
PpsI	GAGTC	1 cut(s)	340
RsaI	GTAC	1 cut(s)	28
RsaNI	GTAC	1 cut(s)	27
SaqAI	TTAA	2 cut(s)	150, 327
Sau3AI	GATC	1 cut(s)	201
SchI	GAGTC	1 cut(s)	341
SduI	GDGCHC	1 cut(s)	168
SetI	ASST	8 cut(s)	61, 210, 216, 223, 239, 258, 304, 310
SpeI	ACTAGT	1 cut(s)	41
Sse9I	AATT	1 cut(s)	151
SspI	AATATT	1 cut(s)	145
SspMI	CTAG	1 cut(s)	42
StyI	CCWWGG	1 cut(s)	102
TaaI	ACNGT	1 cut(s)	170
TaqI	TCGA	1 cut(s)	204
TasI	AATT	1 cut(s)	151
TatI	WGTACW	1 cut(s)	26
TfiI	GAWTC	1 cut(s)	322
Tru1I	TTAA	2 cut(s)	150, 327
Tru9I	TTAA	2 cut(s)	150, 327
TspGWI	ACGGA	1 cut(s)	265
Van91I	CCANNNNNTGG	1 cut(s)	274
XceI	RCATGY	1 cut(s)	73
XspI	CTAG	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.