Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1963183 .. 1964356

Gene Structure 1174 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G026600.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGCTGCCAAGGGCAAAAACCAGTCCCTACCACTAAACTCCAGATCTGCCATGGGGTCGTTTGACCCCATTGACCCCATGGTGGATCCGCCCCTCATATATGCATGTCAGGTTGTGGCTGTGAAAAAGATTGACTCCTCACTGTTTCAAGGCTCAGCGACACAAGAATTTTCTGACATTGTTGTAAATATCTCCAAGATTCGCAATGCCAACATCACCGAACTTGTTGGTTATTGTTCAGAACACGGGCATAACATGTTAATTTACGAGTACTTCAGTAATGGCTCGCTTCATGAATTCTTACACATGTCAGATGACTACAGTAATCCCCTAACTTGGAACACAAGAGTCAGAATTGCTTTAGGCACTGCCCGGGCTGTTGAGTACCTCCATGAAGGCTGCTCTCCATCCACAGTTCACAAGAAAATCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

145

Amino Acids

15.98

Weight (kDa)

6.57

Isoelectric Point (pI)

37.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	89
AclWI	GGATC	2 cut(s)	80, 93
AcsI	RAATTY	2 cut(s)	167, 296
AcuI	CTGAAG	1 cut(s)	259
AfaI	GTAC	2 cut(s)	272, 386
AfiI	CCNNNNNNNGG	2 cut(s)	82, 336
AflIII	ACRYGT	2 cut(s)	255, 306
AgsI	TTSAA	1 cut(s)	149
AlwI	GGATC	2 cut(s)	80, 93
Ama87I	CYCGRG	1 cut(s)	372
ApeKI	GCWGC	2 cut(s)	5, 399
ApoI	RAATTY	2 cut(s)	167, 296
AsuC2I	CCSGG	2 cut(s)	373, 374
AsuHPI	GGTGA	1 cut(s)	208
AvaI	CYCGRG	1 cut(s)	372
BamHI	GGATCC	1 cut(s)	85
BbvI	GCAGC	1 cut(s)	386
BccI	CCATC	1 cut(s)	415
BcnI	CCSGG	2 cut(s)	373, 374
BfmI	CTRYAG	1 cut(s)	319
BglII	AGATCT	1 cut(s)	44
BisI	GCNGC	2 cut(s)	6, 400
BlpI	GCTNAGC	1 cut(s)	154
BlsI	GCNGC	2 cut(s)	7, 401
BmcAI	AGTACT	1 cut(s)	272
Bme1390I	CCNGG	2 cut(s)	373, 374
BmeT110I	CYCGRG	1 cut(s)	372
BmiI	GGNNCC	1 cut(s)	87
BmrFI	CCNGG	2 cut(s)	373, 374
BpmI	CTGGAG	1 cut(s)	25
Bpu1102I	GCTNAGC	1 cut(s)	154
BpuMI	CCSGG	2 cut(s)	373, 374
BsaJI	CCNNGG	4 cut(s)	9, 51, 78, 372
Bsc4I	CCNNNNNNNGG	2 cut(s)	82, 336
Bse1I	ACTGG	1 cut(s)	22
Bse3DI	GCAATG	1 cut(s)	211
BseDI	CCNNGG	4 cut(s)	9, 51, 78, 372
BseGI	GGATG	1 cut(s)	407
BseLI	CCNNNNNNNGG	2 cut(s)	82, 336
BseMI	GCAATG	1 cut(s)	211
BseMII	CTCAG	1 cut(s)	168
BseNI	ACTGG	1 cut(s)	22
BseRI	GAGGAG	1 cut(s)	127
BseXI	GCAGC	1 cut(s)	386
BsiHKCI	CYCGRG	1 cut(s)	372
BsiSI	CCGG	1 cut(s)	373
BslFI	GGGAC	1 cut(s)	10
BslI	CCNNNNNNNGG	2 cut(s)	82, 336
BsmFI	GGGAC	1 cut(s)	10
BsoBI	CYCGRG	1 cut(s)	372
Bsp143I	GATC	2 cut(s)	44, 85
Bsp1720I	GCTNAGC	1 cut(s)	154
Bsp19I	CCATGG	2 cut(s)	51, 78
BspACI	CCGC	1 cut(s)	89
BspCNI	CTCAG	1 cut(s)	167
BspHI	TCATGA	1 cut(s)	292
BspLI	GGNNCC	1 cut(s)	87
BspPI	GGATC	2 cut(s)	80, 93
BsrDI	GCAATG	1 cut(s)	211
BsrI	ACTGG	1 cut(s)	22
BssECI	CCNNGG	4 cut(s)	9, 51, 78, 372
BssMI	GATC	2 cut(s)	44, 85
BssT1I	CCWWGG	3 cut(s)	9, 51, 78
Bst4CI	ACNGT	3 cut(s)	144, 323, 415
BstC8I	GCNNGC	1 cut(s)	287
BstDEI	CTNAG	1 cut(s)	154
BstDSI	CCRYGG	2 cut(s)	51, 78
BstF5I	GGATG	1 cut(s)	407
BstKTI	GATC	2 cut(s)	47, 88
BstMBI	GATC	2 cut(s)	44, 85
BstNSI	RCATGY	3 cut(s)	108, 259, 310
BstSCI	CCNGG	2 cut(s)	371, 372
BstSFI	CTRYAG	1 cut(s)	319
BstV1I	GCAGC	1 cut(s)	386
BstX2I	RGATCY	2 cut(s)	44, 85
BstYI	RGATCY	2 cut(s)	44, 85
BtgI	CCRYGG	2 cut(s)	51, 78
BtsCI	GGATG	1 cut(s)	407
BtsI	GCAGTG	1 cut(s)	366
BtsIMutI	CAGTG	2 cut(s)	140, 366
Cac8I	GCNNGC	1 cut(s)	287
CciI	TCATGA	1 cut(s)	292
Cfr9I	CCCGGG	1 cut(s)	372
Csp6I	GTAC	2 cut(s)	271, 385
CviAII	CATG	7 cut(s)	52, 79, 105, 256, 293, 307, 392
CviJI	RGCY	6 cut(s)	5, 119, 153, 285, 377, 399
CviKI_1	RGCY	6 cut(s)	5, 119, 153, 285, 377, 399
CviQI	GTAC	2 cut(s)	271, 385
DdeI	CTNAG	1 cut(s)	154
DpnI	GATC	2 cut(s)	46, 87
DpnII	GATC	2 cut(s)	44, 85
EciI	GGCGGA	1 cut(s)	78
Eco130I	CCWWGG	3 cut(s)	9, 51, 78
Eco57I	CTGAAG	1 cut(s)	259
Eco88I	CYCGRG	1 cut(s)	372
EcoRI	GAATTC	1 cut(s)	296
EcoT14I	CCWWGG	3 cut(s)	9, 51, 78
EcoT22I	ATGCAT	1 cut(s)	106
ErhI	CCWWGG	3 cut(s)	9, 51, 78
FaeI	CATG	7 cut(s)	55, 82, 108, 259, 296, 310, 395
FaqI	GGGAC	1 cut(s)	10
FatI	CATG	7 cut(s)	51, 78, 104, 255, 292, 306, 391
Fnu4HI	GCNGC	2 cut(s)	6, 400
FokI	GGATG	1 cut(s)	394
Fsp4HI	GCNGC	2 cut(s)	6, 400
GluI	GCNGC	2 cut(s)	6, 400
GsuI	CTGGAG	1 cut(s)	25
HapII	CCGG	1 cut(s)	373
Hin1II	CATG	7 cut(s)	55, 82, 108, 259, 296, 310, 395
HinfI	GANTC	3 cut(s)	134, 199, 348
HpaII	CCGG	1 cut(s)	373
HphI	GGTGA	1 cut(s)	208
Hpy166II	GTNNAC	1 cut(s)	418
Hpy188I	TCNGA	4 cut(s)	175, 241, 313, 353
Hpy188III	TCNNGA	2 cut(s)	42, 293
Hpy8I	GTNNAC	1 cut(s)	418
HpyAV	CCTTC	1 cut(s)	389
HpyCH4III	ACNGT	3 cut(s)	144, 323, 415
HpyCH4V	TGCA	1 cut(s)	104
HpyF3I	CTNAG	1 cut(s)	154
Hsp92II	CATG	7 cut(s)	55, 82, 108, 259, 296, 310, 395
Kzo9I	GATC	2 cut(s)	44, 85
LpnPI	CCDG	4 cut(s)	35, 55, 95, 386
Lsp1109I	GCAGC	1 cut(s)	386
MalI	GATC	2 cut(s)	46, 87
MboI	GATC	2 cut(s)	44, 85
MflI	RGATCY	2 cut(s)	44, 85
MluCI	AATT	4 cut(s)	167, 261, 296, 354
MlyI	GAGTC	2 cut(s)	128, 357
MnlI	CCTC	3 cut(s)	104, 148, 398
Mph1103I	ATGCAT	1 cut(s)	106
MseI	TTAA	1 cut(s)	260
MspI	CCGG	1 cut(s)	373
MspR9I	CCNGG	2 cut(s)	373, 374
NciI	CCSGG	2 cut(s)	373, 374
NcoI	CCATGG	2 cut(s)	51, 78
NdeII	GATC	2 cut(s)	44, 85
NlaIII	CATG	7 cut(s)	55, 82, 108, 259, 296, 310, 395
NlaIV	GGNNCC	1 cut(s)	87
NsiI	ATGCAT	1 cut(s)	106
NspI	RCATGY	3 cut(s)	108, 259, 310
PagI	TCATGA	1 cut(s)	292
PciI	ACATGT	2 cut(s)	255, 306
PfeI	GAWTC	1 cut(s)	199
PkrI	GCNGC	2 cut(s)	7, 401
PleI	GAGTC	2 cut(s)	128, 356
PpsI	GAGTC	2 cut(s)	128, 356
PscI	ACATGT	2 cut(s)	255, 306
PspN4I	GGNNCC	1 cut(s)	87
PsuI	RGATCY	2 cut(s)	44, 85
RsaI	GTAC	2 cut(s)	272, 386
RsaNI	GTAC	2 cut(s)	271, 385
SaqAI	TTAA	1 cut(s)	260
SatI	GCNGC	2 cut(s)	6, 400
Sau3AI	GATC	2 cut(s)	44, 85
ScaI	AGTACT	1 cut(s)	272
SchI	GAGTC	2 cut(s)	128, 357
ScrFI	CCNGG	2 cut(s)	373, 374
SetI	ASST	2 cut(s)	114, 390
SfcI	CTRYAG	1 cut(s)	319
SmaI	CCCGGG	1 cut(s)	374
SrfI	GCCCGGGC	1 cut(s)	374
Sse9I	AATT	4 cut(s)	167, 261, 296, 354
SsiI	CCGC	1 cut(s)	89
StyD4I	CCNGG	2 cut(s)	371, 372
StyI	CCWWGG	3 cut(s)	9, 51, 78
TaaI	ACNGT	3 cut(s)	144, 323, 415
TasI	AATT	4 cut(s)	167, 261, 296, 354
TatI	WGTACW	1 cut(s)	270
TfiI	GAWTC	1 cut(s)	199
Tru1I	TTAA	1 cut(s)	260
Tru9I	TTAA	1 cut(s)	260
TscAI	CASTG	2 cut(s)	147, 373
TseI	GCWGC	2 cut(s)	5, 399
TspDTI	ATGAA	3 cut(s)	281, 309, 408
TspMI	CCCGGG	1 cut(s)	372
TspRI	CASTG	2 cut(s)	147, 373
XapI	RAATTY	2 cut(s)	167, 296
XceI	RCATGY	3 cut(s)	108, 259, 310
XcmI	CCANNNNNNNNNTGG	2 cut(s)	49, 76
XmaI	CCCGGG	1 cut(s)	372
ZrmI	AGTACT	1 cut(s)	272
Zsp2I	ATGCAT	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.