Prupe.3G029100_v2.0.a1

WSTF, HB1, Itc1p, MBD9 motif 1

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
N/A
Physical Location & Seq
Reverse (-)
2185000 .. 2185706
707 bp
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UTR
Exon/CDS
Intron
Prupe.3G029100.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 174 bp
ATGCTTGTGGATGATGAAGAGCTGGAGCTGAGAGAATTACAAGGAAGCCCAAATGCACTGGGGTTCTCTGATCATTTTACTACTAATGGAGATCATGCCTGTTCACTTTGCAAAGATTTGCTGGCCAAGTTTCCTCCAAATTCTGTGAAGATGAAGCAGCCATTCTGTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

58

Amino Acids

6.37

Weight (kDa)

4.78

Isoelectric Point (pI)

58.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 123
AcsI RAATTY 1 cut(s) 139
AluBI AGCT 2 cut(s) 22, 28
AluI AGCT 2 cut(s) 22, 28
AoxI GGCC 1 cut(s) 123
ApeKI GCWGC 1 cut(s) 157
ApoI RAATTY 1 cut(s) 139
BalI TGGCCA 1 cut(s) 125
BbvI GCAGC 1 cut(s) 169
BclI TGATCA 1 cut(s) 70
BisI GCNGC 1 cut(s) 158
BlsI GCNGC 1 cut(s) 159
BmrI ACTGGG 1 cut(s) 68
BmuI ACTGGG 1 cut(s) 68
BpmI CTGGAG 1 cut(s) 44
Bse1I ACTGG 1 cut(s) 63
BseGI GGATG 1 cut(s) 16
BseMII CTCAG 1 cut(s) 20
BseNI ACTGG 1 cut(s) 63
BseXI GCAGC 1 cut(s) 169
BshFI GGCC 1 cut(s) 125
BsnI GGCC 1 cut(s) 125
Bsp143I GATC 2 cut(s) 70, 91
BspANI GGCC 1 cut(s) 125
BspCNI CTCAG 1 cut(s) 21
BspQI GCTCTTC 1 cut(s) 12
BsrI ACTGG 1 cut(s) 63
BssMI GATC 2 cut(s) 70, 91
Bst6I CTCTTC 1 cut(s) 12
BstC8I GCNNGC 1 cut(s) 123
BstDEI CTNAG 1 cut(s) 29
BstF5I GGATG 1 cut(s) 16
BstKTI GATC 2 cut(s) 73, 94
BstMBI GATC 2 cut(s) 70, 91
BstV1I GCAGC 1 cut(s) 169
BsuRI GGCC 1 cut(s) 125
BtsCI GGATG 1 cut(s) 16
BtsIMutI CAGTG 1 cut(s) 56
Cac8I GCNNGC 1 cut(s) 123
CviAII CATG 1 cut(s) 95
CviJI RGCY 5 cut(s) 22, 28, 48, 125, 160
CviKI_1 RGCY 5 cut(s) 22, 28, 48, 125, 160
DdeI CTNAG 1 cut(s) 29
DpnI GATC 2 cut(s) 72, 93
DpnII GATC 2 cut(s) 70, 91
EaeI YGGCCR 1 cut(s) 123
Eam1104I CTCTTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 12
FaeI CATG 1 cut(s) 98
FaiI YATR 2 cut(s) 96, 170
FatI CATG 1 cut(s) 94
FbaI TGATCA 1 cut(s) 70
Fnu4HI GCNGC 1 cut(s) 158
FokI GGATG 1 cut(s) 23
Fsp4HI GCNGC 1 cut(s) 158
GluI GCNGC 1 cut(s) 158
GsuI CTGGAG 1 cut(s) 44
HaeIII GGCC 1 cut(s) 125
Hin1II CATG 1 cut(s) 98
Hpy166II GTNNAC 1 cut(s) 104
Hpy188I TCNGA 1 cut(s) 70
Hpy8I GTNNAC 1 cut(s) 104
HpyCH4V TGCA 2 cut(s) 56, 111
HpyF3I CTNAG 1 cut(s) 29
Hsp92II CATG 1 cut(s) 98
Ksp22I TGATCA 1 cut(s) 70
Kzo9I GATC 2 cut(s) 70, 91
LguI GCTCTTC 1 cut(s) 12
LmnI GCTCC 1 cut(s) 25
LpnPI CCDG 4 cut(s) 8, 44, 107, 112
Lsp1109I GCAGC 1 cut(s) 169
MalI GATC 2 cut(s) 72, 93
MboI GATC 2 cut(s) 70, 91
MboII GAAGA 2 cut(s) 29, 160
MlsI TGGCCA 1 cut(s) 125
MluCI AATT 2 cut(s) 35, 139
MluNI TGGCCA 1 cut(s) 125
MnlI CCTC 1 cut(s) 144
Mox20I TGGCCA 1 cut(s) 125
MscI TGGCCA 1 cut(s) 125
Msp20I TGGCCA 1 cut(s) 125
NdeII GATC 2 cut(s) 70, 91
NlaIII CATG 1 cut(s) 98
PciSI GCTCTTC 1 cut(s) 12
PkrI GCNGC 1 cut(s) 159
SapI GCTCTTC 1 cut(s) 12
SatI GCNGC 1 cut(s) 158
Sau3AI GATC 2 cut(s) 70, 91
SetI ASST 2 cut(s) 24, 30
SgeI CNNG 8 cut(s) 17, 35, 53, 71, 107, 111, 134, 139
Sse9I AATT 2 cut(s) 35, 139
TasI AATT 2 cut(s) 35, 139
TscAI CASTG 1 cut(s) 63
TseI GCWGC 1 cut(s) 157
TspDTI ATGAA 2 cut(s) 30, 167
TspRI CASTG 1 cut(s) 63
XapI RAATTY 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.