Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

2669425 .. 2670655

Gene Structure 1231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G037100.1_v2.0.a1.CDS.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCCACTGAACCTGGCAATGTGAATGAGTTCCGAGAATTGGCTAGGCTAGTTCTTCCAAAAATGTACTATGATTTCTATACTGGGGGAGCTGAGGACCAGCACACGCTAAAGCAGAATGTTGATGCATTTCGCAGATTCGTGTTGCAGCCTAGAGTTCTTGTAGATGTTAGCAAAATAGATATGTCAACTACTGTATTGGGTTACAAAATCTCAGCACCTATAAGATTGCTCCTACAGCTAGGCATCAGAGAGGTCGCCACTGCTAGAGCAGCAGCAGCATGCAACACCATAATGGTTTTATCCAACATGTCTACGTGCACTGTGGAGGACGTTGCTTCCAGCTGCAATGCTGTTCGGTTCTTTCAATTATATTTTTTCTTTACAGGAATATTCCTTGTTTACAGTTTTTTCAGTTTCTGTCATGCCTACTGGGGGCTCAAGCTATCAAATGGTACCTTTCCTGAACAGGTTTACAAGAGACGAGATATATCAGCTCAGATAGTTCAGAGAGCTGAAAAAAGTGGATACAAGGCTATTGTCTTAACTGTTGATGCTCCCAGACTTGGTCGAAGAGAGGCAGACATAAAGAACGATGAGTTTGAGCTCACTATGGCCCTCTGTGGTTGCCCTGGTGTTATGGATATTACCAGGAGCCATGTGAGAACAGAATGTGATAAACTCCACTCCATGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008891 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009853 GO:0009987 GO:0010109 GO:0010204 GO:0016032 GO:0016491 GO:0016614 GO:0016899 GO:0016999 GO:0017000 GO:0017144 GO:0019048 GO:0019222 GO:0023052 GO:0031323 GO:0031347 GO:0031349 GO:0035821 GO:0042579 GO:0042742 GO:0042743 GO:0043094 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044249 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050665 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0055114 GO:0065007 GO:0072593 GO:0080134 GO:0098542 GO:1903409

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

233

Amino Acids

26.24

Weight (kDa)

8.45

Isoelectric Point (pI)

42.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	455
AccB1I	GGYRCC	1 cut(s)	455
AccI	GTMKAC	1 cut(s)	314
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	2 cut(s)	68, 457
AfiI	CCNNNNNNNGG	3 cut(s)	40, 435, 566
AflIII	ACRYGT	1 cut(s)	309
AgsI	TTSAA	1 cut(s)	368
AjnI	CCWGG	3 cut(s)	13, 631, 650
AluBI	AGCT	7 cut(s)	92, 241, 345, 445, 497, 515, 607
AluI	AGCT	7 cut(s)	92, 241, 345, 445, 497, 515, 607
Alw21I	GWGCWC	2 cut(s)	323, 609
Alw26I	GTCTC	1 cut(s)	475
Alw44I	GTGCAC	1 cut(s)	319
AlwNI	CAGNNNCTG	1 cut(s)	420
AoxI	GGCC	2 cut(s)	3, 615
ApaLI	GTGCAC	1 cut(s)	319
ApeKI	GCWGC	5 cut(s)	148, 272, 275, 278, 345
Asp700I	GAANNNNTTC	1 cut(s)	29
Asp718I	GGTACC	1 cut(s)	455
AspS9I	GGNCC	2 cut(s)	97, 616
AvaII	GGWCC	1 cut(s)	97
BaeGI	GKGCMC	1 cut(s)	323
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	455
BanII	GRGCYC	2 cut(s)	441, 609
Bbv12I	GWGCWC	2 cut(s)	323, 609
BbvCI	CCTCAGC	1 cut(s)	93
BbvI	GCAGC	5 cut(s)	160, 284, 287, 290, 332
BciT130I	CCWGG	3 cut(s)	15, 633, 652
BciVI	GTATCC	1 cut(s)	521
BcoDI	GTCTC	1 cut(s)	475
BfaI	CTAG	5 cut(s)	45, 50, 153, 242, 267
BfmI	CTRYAG	1 cut(s)	236
BfuI	GTATCC	1 cut(s)	521
BisI	GCNGC	5 cut(s)	149, 273, 276, 279, 346
BlsI	GCNGC	5 cut(s)	150, 274, 277, 280, 347
Bme1390I	CCNGG	3 cut(s)	15, 633, 652
Bme18I	GGWCC	1 cut(s)	97
BmgT120I	GGNCC	2 cut(s)	97, 616
BmiI	GGNNCC	2 cut(s)	457, 656
BmrFI	CCNGG	3 cut(s)	15, 633, 652
BmrI	ACTGGG	2 cut(s)	93, 442
BmsI	GCATC	3 cut(s)	115, 255, 544
BmuI	ACTGGG	2 cut(s)	93, 442
Bpu10I	CCTNAGC	1 cut(s)	93
BpuEI	CTTGAG	1 cut(s)	425
BsaAI	YACGTR	1 cut(s)	318
BsaJI	CCNNGG	1 cut(s)	631
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 435, 566
Bse1I	ACTGG	2 cut(s)	88, 437
Bse3DI	GCAATG	2 cut(s)	25, 355
BseBI	CCWGG	3 cut(s)	15, 633, 652
BseDI	CCNNGG	1 cut(s)	631
BseLI	CCNNNNNNNGG	3 cut(s)	40, 435, 566
BseMI	GCAATG	2 cut(s)	25, 355
BseMII	CTCAG	3 cut(s)	84, 228, 512
BseNI	ACTGG	2 cut(s)	88, 437
BseSI	GKGCMC	1 cut(s)	323
BseXI	GCAGC	5 cut(s)	160, 284, 287, 290, 332
BshFI	GGCC	2 cut(s)	5, 617
BshNI	GGYRCC	1 cut(s)	455
BsiHKAI	GWGCWC	2 cut(s)	323, 609
BslI	CCNNNNNNNGG	3 cut(s)	40, 435, 566
BsmAI	GTCTC	1 cut(s)	475
BsmBI	CGTCTC	1 cut(s)	475
BsnI	GGCC	2 cut(s)	5, 617
Bsp1286I	GDGCHC	3 cut(s)	323, 441, 609
BspANI	GGCC	2 cut(s)	5, 617
BspCNI	CTCAG	3 cut(s)	85, 227, 511
BspLI	GGNNCC	2 cut(s)	457, 656
BspT107I	GGYRCC	1 cut(s)	455
BsrDI	GCAATG	2 cut(s)	25, 355
BsrI	ACTGG	2 cut(s)	88, 437
BssECI	CCNNGG	1 cut(s)	631
Bst2UI	CCWGG	3 cut(s)	15, 633, 652
Bst4CI	ACNGT	4 cut(s)	196, 325, 407, 550
Bst6I	CTCTTC	1 cut(s)	568
BstBAI	YACGTR	1 cut(s)	318
BstC8I	GCNNGC	1 cut(s)	283
BstDEI	CTNAG	3 cut(s)	93, 214, 498
BstMAI	GTCTC	1 cut(s)	475
BstMWI	GCNNNNNNNGC	3 cut(s)	238, 272, 278
BstNI	CCWGG	3 cut(s)	15, 633, 652
BstNSI	RCATGY	2 cut(s)	285, 313
BstSCI	CCNGG	3 cut(s)	13, 631, 650
BstSFI	CTRYAG	1 cut(s)	236
BstSLI	GKGCMC	1 cut(s)	323
BstV1I	GCAGC	5 cut(s)	160, 284, 287, 290, 332
BsuI	GTATCC	1 cut(s)	521
BsuRI	GGCC	2 cut(s)	5, 617
BtsI	GCAGTG	1 cut(s)	261
BtsIMutI	CAGTG	3 cut(s)	6, 261, 321
Cac8I	GCNNGC	1 cut(s)	283
CaiI	CAGNNNCTG	1 cut(s)	420
Cfr13I	GGNCC	2 cut(s)	97, 616
Csp6I	GTAC	2 cut(s)	67, 456
CviAII	CATG	5 cut(s)	282, 310, 425, 659, 691
CviQI	GTAC	2 cut(s)	67, 456
DdeI	CTNAG	3 cut(s)	93, 214, 498
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	568
EarI	CTCTTC	1 cut(s)	568
Ecl136II	GAGCTC	1 cut(s)	607
Eco24I	GRGCYC	2 cut(s)	441, 609
Eco47I	GGWCC	1 cut(s)	97
Eco53kI	GAGCTC	1 cut(s)	607
EcoICRI	GAGCTC	1 cut(s)	607
EcoRII	CCWGG	3 cut(s)	13, 631, 650
EcoT22I	ATGCAT	1 cut(s)	130
EcoT38I	GRGCYC	2 cut(s)	441, 609
Esp3I	CGTCTC	1 cut(s)	475
FaeI	CATG	5 cut(s)	285, 313, 428, 662, 694
FatI	CATG	5 cut(s)	281, 309, 424, 658, 690
FblI	GTMKAC	1 cut(s)	314
Fnu4HI	GCNGC	5 cut(s)	149, 273, 276, 279, 346
FriOI	GRGCYC	2 cut(s)	441, 609
Fsp4HI	GCNGC	5 cut(s)	149, 273, 276, 279, 346
FspBI	CTAG	5 cut(s)	45, 50, 153, 242, 267
GluI	GCNGC	5 cut(s)	149, 273, 276, 279, 346
HaeIII	GGCC	2 cut(s)	5, 617
Hin1II	CATG	5 cut(s)	285, 313, 428, 662, 694
HincII	GTYRAC	1 cut(s)	189
HindII	GTYRAC	1 cut(s)	189
HinfI	GANTC	1 cut(s)	138
Hpy166II	GTNNAC	5 cut(s)	189, 315, 321, 403, 475
Hpy188I	TCNGA	4 cut(s)	35, 251, 501, 510
Hpy188III	TCNNGA	1 cut(s)	464
Hpy8I	GTNNAC	5 cut(s)	189, 315, 321, 403, 475
HpyCH4III	ACNGT	4 cut(s)	196, 325, 407, 550
HpyCH4IV	ACGT	2 cut(s)	317, 333
HpyCH4V	TGCA	5 cut(s)	128, 148, 285, 321, 348
HpyF10VI	GCNNNNNNNGC	3 cut(s)	238, 272, 278
HpyF3I	CTNAG	3 cut(s)	93, 214, 498
HpySE526I	ACGT	2 cut(s)	317, 333
Hsp92II	CATG	5 cut(s)	285, 313, 428, 662, 694
KpnI	GGTACC	1 cut(s)	459
LmnI	GCTCC	4 cut(s)	89, 237, 562, 654
Lsp1109I	GCAGC	5 cut(s)	160, 284, 287, 290, 332
LweI	GCATC	3 cut(s)	115, 255, 544
MaeI	CTAG	5 cut(s)	45, 50, 153, 242, 267
MaeII	ACGT	2 cut(s)	317, 333
MaeIII	GTNAC	1 cut(s)	203
MboII	GAAGA	2 cut(s)	47, 585
MhlI	GDGCHC	3 cut(s)	323, 441, 609
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	38, 368
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	330
MnlI	CCTC	5 cut(s)	88, 247, 322, 571, 629
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	130
MroXI	GAANNNNTTC	1 cut(s)	29
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	545, 697
MslI	CAYNNNNRTG	1 cut(s)	293
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	345
MspR9I	CCNGG	3 cut(s)	15, 633, 652
MvaI	CCWGG	3 cut(s)	15, 633, 652
MwoI	GCNNNNNNNGC	3 cut(s)	238, 272, 278
NlaIII	CATG	5 cut(s)	285, 313, 428, 662, 694
NlaIV	GGNNCC	2 cut(s)	457, 656
NsiI	ATGCAT	1 cut(s)	130
NspI	RCATGY	2 cut(s)	285, 313
PaeI	GCATGC	1 cut(s)	285
PciI	ACATGT	1 cut(s)	309
PdmI	GAANNNNTTC	1 cut(s)	29
PfeI	GAWTC	1 cut(s)	138
PflFI	GACNNNGTC	1 cut(s)	567
PkrI	GCNGC	5 cut(s)	150, 274, 277, 280, 347
Ppu21I	YACGTR	1 cut(s)	318
PscI	ACATGT	1 cut(s)	309
Psp124BI	GAGCTC	1 cut(s)	609
Psp6I	CCWGG	3 cut(s)	13, 631, 650
PspGI	CCWGG	3 cut(s)	13, 631, 650
PspN4I	GGNNCC	2 cut(s)	457, 656
PspPI	GGNCC	2 cut(s)	97, 616
PstNI	CAGNNNCTG	1 cut(s)	420
PsyI	GACNNNGTC	1 cut(s)	567
PvuII	CAGCTG	1 cut(s)	345
RsaI	GTAC	2 cut(s)	68, 457
RsaNI	GTAC	2 cut(s)	67, 456
RseI	CAYNNNNRTG	1 cut(s)	293
SacI	GAGCTC	1 cut(s)	609
SaqAI	TTAA	2 cut(s)	545, 697
SatI	GCNGC	5 cut(s)	149, 273, 276, 279, 346
Sau96I	GGNCC	2 cut(s)	97, 616
ScrFI	CCNGG	3 cut(s)	15, 633, 652
SduI	GDGCHC	3 cut(s)	323, 441, 609
SfaNI	GCATC	3 cut(s)	115, 255, 544
SfcI	CTRYAG	1 cut(s)	236
SinI	GGWCC	1 cut(s)	97
SmiMI	CAYNNNNRTG	1 cut(s)	293
SmlI	CTYRAG	1 cut(s)	440
SmoI	CTYRAG	1 cut(s)	440
SphI	GCATGC	1 cut(s)	285
Sse9I	AATT	2 cut(s)	38, 368
SspI	AATATT	1 cut(s)	393
SspMI	CTAG	5 cut(s)	45, 50, 153, 242, 267
SstI	GAGCTC	1 cut(s)	609
StyD4I	CCNGG	3 cut(s)	13, 631, 650
TaaI	ACNGT	4 cut(s)	196, 325, 407, 550
TaiI	ACGT	2 cut(s)	320, 336
TaqI	TCGA	1 cut(s)	571
TasI	AATT	2 cut(s)	38, 368
TatI	WGTACW	1 cut(s)	66
TfiI	GAWTC	1 cut(s)	138
Tru1I	TTAA	2 cut(s)	545, 697
Tru9I	TTAA	2 cut(s)	545, 697
TscAI	CASTG	3 cut(s)	13, 268, 328
TseI	GCWGC	5 cut(s)	148, 272, 275, 278, 345
TspRI	CASTG	3 cut(s)	13, 268, 328
Tth111I	GACNNNGTC	1 cut(s)	567
VneI	GTGCAC	1 cut(s)	319
VpaK11BI	GGWCC	1 cut(s)	97
XceI	RCATGY	2 cut(s)	285, 313
XmiI	GTMKAC	1 cut(s)	314
XmnI	GAANNNNTTC	1 cut(s)	29
XspI	CTAG	5 cut(s)	45, 50, 153, 242, 267
Zsp2I	ATGCAT	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.