Prupe.3G045800_v2.0.a1
ERF Family

Mitochondrial transcription termination factor family protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
N/A
Physical Location & Seq
Reverse (-)
3281457 .. 3282110
654 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G045800.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 201 bp
ATGATGGATGCATCAAAATGGGAAATTTTTTTTTATAGGAAGCGTGGTTGGACTGAAGATGATTTCTTGTTGGAATTTCGAAAGAATCCCTTGTTTATGAACTTATCGGAGATGAATTTTTCTAGTAAAATTGATTTTCTTATGAACGAAATAGCCTTCCAGATGTGGCTGGAAATTCAGGTGTTCTATCTCATGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

67

Amino Acids

8.26

Weight (kDa)

4.69

Isoelectric Point (pI)

34.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 4 cut(s) 24, 74, 115, 174
AcuI CTGAAG 1 cut(s) 75
ApoI RAATTY 4 cut(s) 24, 74, 115, 174
AsuII TTCGAA 1 cut(s) 79
BfaI CTAG 1 cut(s) 123
BmsI GCATC 1 cut(s) 20
Bpu14I TTCGAA 1 cut(s) 79
BseGI GGATG 1 cut(s) 13
Bsp119I TTCGAA 1 cut(s) 79
BspT104I TTCGAA 1 cut(s) 79
BstBI TTCGAA 1 cut(s) 79
BstF5I GGATG 1 cut(s) 13
BtsCI GGATG 1 cut(s) 13
CviAII CATG 1 cut(s) 193
CviJI RGCY 2 cut(s) 155, 169
CviKI_1 RGCY 2 cut(s) 155, 169
Eco57I CTGAAG 1 cut(s) 75
EcoT22I ATGCAT 1 cut(s) 13
FaeI CATG 1 cut(s) 196
FaiI YATR 4 cut(s) 36, 98, 143, 194
FalI AAGNNNNNCTT 2 cut(s) 74, 106
FatI CATG 1 cut(s) 192
FokI GGATG 1 cut(s) 20
FspBI CTAG 1 cut(s) 123
Hin1II CATG 1 cut(s) 196
HinfI GANTC 1 cut(s) 85
Hpy188I TCNGA 1 cut(s) 109
Hpy188III TCNNGA 1 cut(s) 160
HpyAV CCTTC 1 cut(s) 166
HpyCH4V TGCA 1 cut(s) 11
Hsp92II CATG 1 cut(s) 196
LpnPI CCDG 3 cut(s) 155, 164, 173
LweI GCATC 1 cut(s) 20
MaeI CTAG 1 cut(s) 123
MboII GAAGA 1 cut(s) 68
MluCI AATT 5 cut(s) 24, 74, 115, 129, 174
MmeI TCCRAC 2 cut(s) 29, 51
Mph1103I ATGCAT 1 cut(s) 13
MslI CAYNNNNRTG 1 cut(s) 16
NlaIII CATG 1 cut(s) 196
NsiI ATGCAT 1 cut(s) 13
NspV TTCGAA 1 cut(s) 79
PfeI GAWTC 1 cut(s) 85
RseI CAYNNNNRTG 1 cut(s) 16
SetI ASST 1 cut(s) 183
SfaNI GCATC 1 cut(s) 20
SfuI TTCGAA 1 cut(s) 79
SgeI CNNG 7 cut(s) 56, 79, 103, 135, 172, 182, 191
SmiMI CAYNNNNRTG 1 cut(s) 16
Sse9I AATT 5 cut(s) 24, 74, 115, 129, 174
SspMI CTAG 1 cut(s) 123
TaqI TCGA 1 cut(s) 79
TasI AATT 5 cut(s) 24, 74, 115, 129, 174
TfiI GAWTC 1 cut(s) 85
TspDTI ATGAA 3 cut(s) 113, 128, 158
XapI RAATTY 4 cut(s) 24, 74, 115, 174
XspI CTAG 1 cut(s) 123
Zsp2I ATGCAT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.