Prupe.3G045900_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
N/A
Physical Location & Seq
Forward (+)
3282602 .. 3284619
2018 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G045900.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 234 bp
ATGTGGTCATCAGAGAATCCAGGGTTTCTTAGAACATTAAGAACTGAGTCTGGTCCTTCTCGGTTATCAAACTGTACACTCTTGGAAGCAGAGAGAGCCAGTTTTGGGGACAACCCACATGAGTTTATAAGGCATGAAACTGTAAAAGAGAATACTTTTTCTTGTAGCTTATCATTTCCAGAAACTAATGATGATTTTGATGAATATGAGCTGAAAAAAATAGGTTCTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

8.85

Weight (kDa)

4.74

Isoelectric Point (pI)

40.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 128
AfaI GTAC 1 cut(s) 76
AfiI CCNNNNNNNGG 1 cut(s) 105
AjnI CCWGG 1 cut(s) 19
AluBI AGCT 2 cut(s) 168, 211
AluI AGCT 2 cut(s) 168, 211
AspS9I GGNCC 1 cut(s) 53
AvaII GGWCC 1 cut(s) 53
BciT130I CCWGG 1 cut(s) 21
Bme1390I CCNGG 1 cut(s) 21
Bme18I GGWCC 1 cut(s) 53
BmgT120I GGNCC 1 cut(s) 53
BmrFI CCNGG 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 20
Bsc4I CCNNNNNNNGG 1 cut(s) 105
Bse1I ACTGG 1 cut(s) 99
BseBI CCWGG 1 cut(s) 21
BseDI CCNNGG 1 cut(s) 20
BseLI CCNNNNNNNGG 1 cut(s) 105
BseMII CTCAG 1 cut(s) 36
BseNI ACTGG 1 cut(s) 99
BslFI GGGAC 1 cut(s) 122
BslI CCNNNNNNNGG 1 cut(s) 105
BsmFI GGGAC 1 cut(s) 122
Bsp1407I TGTACA 1 cut(s) 74
BspCNI CTCAG 1 cut(s) 37
BsrGI TGTACA 1 cut(s) 74
BsrI ACTGG 1 cut(s) 99
BssECI CCNNGG 1 cut(s) 20
Bst2UI CCWGG 1 cut(s) 21
Bst4CI ACNGT 2 cut(s) 74, 142
BstAUI TGTACA 1 cut(s) 74
BstDEI CTNAG 2 cut(s) 29, 45
BstMWI GCNNNNNNNGC 1 cut(s) 95
BstNI CCWGG 1 cut(s) 21
BstSCI CCNGG 1 cut(s) 19
Cfr13I GGNCC 1 cut(s) 53
Csp6I GTAC 1 cut(s) 75
CviAII CATG 2 cut(s) 119, 134
CviJI RGCY 3 cut(s) 98, 168, 211
CviKI_1 RGCY 3 cut(s) 98, 168, 211
CviQI GTAC 1 cut(s) 75
DdeI CTNAG 2 cut(s) 29, 45
Eco47I GGWCC 1 cut(s) 53
EcoRII CCWGG 1 cut(s) 19
FaeI CATG 2 cut(s) 122, 137
FaiI YATR 4 cut(s) 120, 128, 135, 207
FaqI GGGAC 1 cut(s) 122
FatI CATG 2 cut(s) 118, 133
Hin1II CATG 2 cut(s) 122, 137
HinfI GANTC 2 cut(s) 16, 47
Hpy166II GTNNAC 1 cut(s) 77
Hpy188I TCNGA 1 cut(s) 13
Hpy188III TCNNGA 1 cut(s) 179
Hpy8I GTNNAC 1 cut(s) 77
HpyAV CCTTC 1 cut(s) 66
HpyCH4III ACNGT 2 cut(s) 74, 142
HpyF10VI GCNNNNNNNGC 1 cut(s) 95
HpyF3I CTNAG 2 cut(s) 29, 45
Hsp92II CATG 2 cut(s) 122, 137
LpnPI CCDG 5 cut(s) 6, 33, 36, 112, 192
MlyI GAGTC 1 cut(s) 56
MseI TTAA 1 cut(s) 38
MspR9I CCNGG 1 cut(s) 21
MvaI CCWGG 1 cut(s) 21
MwoI GCNNNNNNNGC 1 cut(s) 95
NlaIII CATG 2 cut(s) 122, 137
PfeI GAWTC 1 cut(s) 16
PleI GAGTC 1 cut(s) 55
PpsI GAGTC 1 cut(s) 55
PsiI TTATAA 1 cut(s) 128
Psp6I CCWGG 1 cut(s) 19
PspGI CCWGG 1 cut(s) 19
PspPI GGNCC 1 cut(s) 53
RsaI GTAC 1 cut(s) 76
RsaNI GTAC 1 cut(s) 75
SaqAI TTAA 1 cut(s) 38
Sau96I GGNCC 1 cut(s) 53
SchI GAGTC 1 cut(s) 56
ScrFI CCNGG 1 cut(s) 21
SetI ASST 3 cut(s) 170, 213, 226
SinI GGWCC 1 cut(s) 53
StyD4I CCNGG 1 cut(s) 19
TaaI ACNGT 2 cut(s) 74, 142
TatI WGTACW 1 cut(s) 74
TfiI GAWTC 1 cut(s) 16
Tru1I TTAA 1 cut(s) 38
Tru9I TTAA 1 cut(s) 38
TspDTI ATGAA 2 cut(s) 150, 216
VpaK11BI GGWCC 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.