Prupe.3G058300_v2.0.a1

Reticulon-like protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
4124663 .. 4127141
2479 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G058300.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 291 bp
ATGAACATCTCGGTAACCGTCGATCCACTCGAGTGGCAGATTTCGCAGGACACTGCTAATAGCATTGTTGCATGGTTAGCCAATACCATAGGAGCAGCTGAGTCTGTATTGAGGGTTCCAGACACAGGGCATGACAAGAGGTTGTTTTTCAAGGTGGTGTTTTGTCTTTACATGCTATCAGCTTTGGCACGGTTGGTGTCAGGTCTTACAGTTGCCTATGCTGGATTATGCTTGTTTTGCCTTTATATGTCAGCTGAGATCAGTCGGTCAATCAGTGCATGTTTGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

97

Amino Acids

10.45

Weight (kDa)

5.59

Isoelectric Point (pI)

51.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022497)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 17
AfiI CCNNNNNNNGG 1 cut(s) 125
AgsI TTSAA 1 cut(s) 151
AleI CACNNNNGTG 1 cut(s) 31
AluBI AGCT 3 cut(s) 98, 182, 254
AluI AGCT 3 cut(s) 98, 182, 254
AlwI GGATC 1 cut(s) 17
Ama87I CYCGRG 1 cut(s) 29
ApeKI GCWGC 1 cut(s) 95
AvaI CYCGRG 1 cut(s) 29
BbvI GCAGC 1 cut(s) 107
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
BmeT110I CYCGRG 1 cut(s) 29
BmiI GGNNCC 1 cut(s) 117
Bsc4I CCNNNNNNNGG 1 cut(s) 125
BseLI CCNNNNNNNGG 1 cut(s) 125
BseMII CTCAG 2 cut(s) 90, 246
BseXI GCAGC 1 cut(s) 107
BsiHKCI CYCGRG 1 cut(s) 29
BslI CCNNNNNNNGG 1 cut(s) 125
BsoBI CYCGRG 1 cut(s) 29
Bsp143I GATC 2 cut(s) 22, 258
BspCNI CTCAG 2 cut(s) 91, 247
BspLI GGNNCC 1 cut(s) 117
BspPI GGATC 1 cut(s) 17
BssMI GATC 2 cut(s) 22, 258
Bst4CI ACNGT 3 cut(s) 19, 192, 211
BstDEI CTNAG 2 cut(s) 99, 255
BstEII GGTNACC 1 cut(s) 13
BstKTI GATC 2 cut(s) 25, 261
BstMBI GATC 2 cut(s) 22, 258
BstMWI GCNNNNNNNGC 3 cut(s) 43, 77, 237
BstNSI RCATGY 2 cut(s) 175, 282
BstPI GGTNACC 1 cut(s) 13
BstV1I GCAGC 1 cut(s) 107
BstXI CCANNNNNNTGG 1 cut(s) 33
BtsI GCAGTG 1 cut(s) 51
BtsIMutI CAGTG 2 cut(s) 51, 280
CviAII CATG 4 cut(s) 72, 131, 172, 279
CviJI RGCY 4 cut(s) 80, 98, 182, 254
CviKI_1 RGCY 4 cut(s) 80, 98, 182, 254
DdeI CTNAG 2 cut(s) 99, 255
DpnI GATC 2 cut(s) 24, 260
DpnII GATC 2 cut(s) 22, 258
Eco88I CYCGRG 1 cut(s) 29
Eco91I GGTNACC 1 cut(s) 13
EcoO65I GGTNACC 1 cut(s) 13
FaeI CATG 4 cut(s) 75, 134, 175, 282
FaiI YATR 9 cut(s) 73, 89, 132, 173, 219, 229, 246, 248, 280
FatI CATG 4 cut(s) 71, 130, 171, 278
Fnu4HI GCNGC 1 cut(s) 96
Fsp4HI GCNGC 1 cut(s) 96
GluI GCNGC 1 cut(s) 96
Hin1II CATG 4 cut(s) 75, 134, 175, 282
HinfI GANTC 1 cut(s) 101
Hpy188III TCNNGA 2 cut(s) 119, 288
Hpy99I CGWCG 1 cut(s) 23
HpyCH4III ACNGT 3 cut(s) 19, 192, 211
HpyCH4V TGCA 2 cut(s) 71, 278
HpyF10VI GCNNNNNNNGC 3 cut(s) 43, 77, 237
HpyF3I CTNAG 2 cut(s) 99, 255
Hsp92II CATG 4 cut(s) 75, 134, 175, 282
Kzo9I GATC 2 cut(s) 22, 258
LmnI GCTCC 1 cut(s) 92
LpnPI CCDG 5 cut(s) 32, 111, 132, 186, 207
Lsp1109I GCAGC 1 cut(s) 107
MaeIII GTNAC 1 cut(s) 13
MalI GATC 2 cut(s) 24, 260
MboI GATC 2 cut(s) 22, 258
MlyI GAGTC 1 cut(s) 110
MnlI CCTC 2 cut(s) 105, 132
MslI CAYNNNNRTG 1 cut(s) 31
MspA1I CMGCKG 2 cut(s) 98, 254
MwoI GCNNNNNNNGC 3 cut(s) 43, 77, 237
NdeII GATC 2 cut(s) 22, 258
NlaIII CATG 4 cut(s) 75, 134, 175, 282
NlaIV GGNNCC 1 cut(s) 117
NspI RCATGY 2 cut(s) 175, 282
OliI CACNNNNGTG 1 cut(s) 31
PaeR7I CTCGAG 1 cut(s) 29
PcsI WCGNNNNNNNCGW 1 cut(s) 27
PkrI GCNGC 1 cut(s) 97
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
PspEI GGTNACC 1 cut(s) 13
PspN4I GGNNCC 1 cut(s) 117
PspXI VCTCGAGB 1 cut(s) 29
PsrI GAACNNNNNNTAC 2 cut(s) 99, 131
PvuII CAGCTG 2 cut(s) 98, 254
RseI CAYNNNNRTG 1 cut(s) 31
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 2 cut(s) 22, 258
SchI GAGTC 1 cut(s) 110
SetI ASST 6 cut(s) 100, 143, 156, 184, 205, 256
Sfr274I CTCGAG 1 cut(s) 29
SlaI CTCGAG 1 cut(s) 29
SmiMI CAYNNNNRTG 1 cut(s) 31
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
TaaI ACNGT 3 cut(s) 19, 192, 211
TaqI TCGA 2 cut(s) 21, 30
TaqII GACCGA 1 cut(s) 255
TscAI CASTG 2 cut(s) 58, 280
TseI GCWGC 1 cut(s) 95
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 58, 280
XceI RCATGY 2 cut(s) 175, 282
XhoI CTCGAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.