Prupe.3G059700_v2.0.a1

Polygalacturonase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
N/A
Physical Location & Seq
Forward (+)
4226829 .. 4229708
2880 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G059700.1_v2.0.a1.CDS.3

Sequence Viewer

Length: 555 bp
ATGGCTTATATTCGTTCCATTAACCAAACAACTTTTAATGTGCTTGACTATGGTGCTGTTGGAGATGGCCAAACTGATGATTCTAAAAATTCGCACAACCCTGTACCTAGTGTGGGAGGCTTAGGCGTAAATGGAGCTTATGAGACAACAGAAGAGATTCATGTGAGAAATTGTACTTTCAATGGCGGTTCTGGATATGCCAAGAAGATATCGTTTGAGCAAATCAAATTAGTAGCATCTAGAAACCTAATTGTCATTGACCAACATTATTGTAATGGTAGACATGACTGCAAAAATTCAATTTCGGGTGTAGGTGTGAGTGATGTGAAATACATTGATTTTCAAGCGACTTCAGCAAGTGAAGAAGCCATTAAATTTGATTGCTCCAAGATTCTAGGTTGTGTCAACATTGTGATGAACCAAATTAATATCGCTTTGCAAGTTGCTGGAAAGGAGATTCATGCCTCTTGCAACAATGTAAATGGAACTTCCAATAGAAAACATCCTCGACCTCATCCTCATCCTCATTGTTTGGATGGAAATGTAGCAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

185

Amino Acids

19.84

Weight (kDa)

6.74

Isoelectric Point (pI)

37.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 280
AciI CCGC 1 cut(s) 186
AcoI YGGCCR 1 cut(s) 67
AcsI RAATTY 3 cut(s) 88, 295, 374
AcuI CTGAAG 1 cut(s) 336
AfaI GTAC 2 cut(s) 105, 175
AfiI CCNNNNNNNGG 1 cut(s) 113
AgsI TTSAA 3 cut(s) 181, 300, 344
AluBI AGCT 2 cut(s) 137, 551
AluI AGCT 2 cut(s) 137, 551
Alw26I GTCTC 1 cut(s) 137
AoxI GGCC 1 cut(s) 67
ApeKI GCWGC 1 cut(s) 548
ApoI RAATTY 3 cut(s) 88, 295, 374
AseI ATTAAT 1 cut(s) 426
Asp700I GAANNNNTTC 1 cut(s) 156
BalI TGGCCA 1 cut(s) 69
BccI CCATC 2 cut(s) 59, 530
BcoDI GTCTC 1 cut(s) 137
BfaI CTAG 3 cut(s) 108, 240, 395
BisI GCNGC 1 cut(s) 549
BlsI GCNGC 1 cut(s) 550
BmsI GCATC 1 cut(s) 245
Bpu10I CCTNAGC 1 cut(s) 121
Bsc4I CCNNNNNNNGG 1 cut(s) 113
BseGI GGATG 4 cut(s) 502, 514, 520, 541
BseLI CCNNNNNNNGG 1 cut(s) 113
BshFI GGCC 1 cut(s) 69
BslI CCNNNNNNNGG 1 cut(s) 113
BsmAI GTCTC 1 cut(s) 137
BsnI GGCC 1 cut(s) 69
BspACI CCGC 1 cut(s) 186
BspANI GGCC 1 cut(s) 69
Bst6I CTCTTC 1 cut(s) 147
BstDEI CTNAG 1 cut(s) 121
BstF5I GGATG 4 cut(s) 502, 514, 520, 541
BstMAI GTCTC 1 cut(s) 137
BstMWI GCNNNNNNNGC 1 cut(s) 353
BsuRI GGCC 1 cut(s) 69
BtsCI GGATG 4 cut(s) 502, 514, 520, 541
Csp6I GTAC 2 cut(s) 104, 174
CviAII CATG 3 cut(s) 161, 284, 461
CviJI RGCY 6 cut(s) 5, 69, 120, 137, 368, 551
CviKI_1 RGCY 6 cut(s) 5, 69, 120, 137, 368, 551
CviQI GTAC 2 cut(s) 104, 174
DdeI CTNAG 1 cut(s) 121
EaeI YGGCCR 1 cut(s) 67
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
Eco32I GATATC 1 cut(s) 210
Eco57I CTGAAG 1 cut(s) 336
EcoRV GATATC 1 cut(s) 210
FaeI CATG 3 cut(s) 164, 287, 464
FaiI YATR 7 cut(s) 9, 51, 141, 162, 198, 285, 462
FatI CATG 3 cut(s) 160, 283, 460
FblI GTMKAC 1 cut(s) 280
Fnu4HI GCNGC 1 cut(s) 549
FokI GGATG 4 cut(s) 489, 501, 507, 548
Fsp4HI GCNGC 1 cut(s) 549
FspBI CTAG 3 cut(s) 108, 240, 395
GluI GCNGC 1 cut(s) 549
HaeIII GGCC 1 cut(s) 69
Hin1II CATG 3 cut(s) 164, 287, 464
HincII GTYRAC 1 cut(s) 406
HindII GTYRAC 1 cut(s) 406
HinfI GANTC 4 cut(s) 80, 157, 391, 457
Hpy166II GTNNAC 2 cut(s) 281, 406
Hpy188III TCNNGA 2 cut(s) 192, 240
Hpy8I GTNNAC 2 cut(s) 281, 406
HpyCH4V TGCA 3 cut(s) 291, 439, 471
HpyF10VI GCNNNNNNNGC 1 cut(s) 353
HpyF3I CTNAG 1 cut(s) 121
Hsp92II CATG 3 cut(s) 164, 287, 464
LmnI GCTCC 2 cut(s) 134, 389
LpnPI CCDG 3 cut(s) 114, 177, 432
LweI GCATC 1 cut(s) 245
MaeI CTAG 3 cut(s) 108, 240, 395
MboII GAAGA 3 cut(s) 164, 217, 374
MlsI TGGCCA 1 cut(s) 69
MluCI AATT 8 cut(s) 88, 169, 227, 249, 295, 300, 374, 423
MluNI TGGCCA 1 cut(s) 69
MmeI TCCRAC 1 cut(s) 40
MnlI CCTC 6 cut(s) 110, 475, 516, 522, 528, 534
Mox20I TGGCCA 1 cut(s) 69
MroXI GAANNNNTTC 1 cut(s) 156
MscI TGGCCA 1 cut(s) 69
MseI TTAA 5 cut(s) 21, 36, 372, 426, 553
MslI CAYNNNNRTG 1 cut(s) 413
Msp20I TGGCCA 1 cut(s) 69
MwoI GCNNNNNNNGC 1 cut(s) 353
NlaIII CATG 3 cut(s) 164, 287, 464
PdmI GAANNNNTTC 1 cut(s) 156
PfeI GAWTC 4 cut(s) 80, 157, 391, 457
PkrI GCNGC 1 cut(s) 550
PshBI ATTAAT 1 cut(s) 426
RsaI GTAC 2 cut(s) 105, 175
RsaNI GTAC 2 cut(s) 104, 174
RseI CAYNNNNRTG 1 cut(s) 413
SaqAI TTAA 5 cut(s) 21, 36, 372, 426, 553
SatI GCNGC 1 cut(s) 549
SetI ASST 7 cut(s) 109, 139, 249, 316, 400, 514, 553
SfaNI GCATC 1 cut(s) 245
SmiMI CAYNNNNRTG 1 cut(s) 413
Sse9I AATT 8 cut(s) 88, 169, 227, 249, 295, 300, 374, 423
SsiI CCGC 1 cut(s) 186
SspMI CTAG 3 cut(s) 108, 240, 395
TaqI TCGA 1 cut(s) 508
TasI AATT 8 cut(s) 88, 169, 227, 249, 295, 300, 374, 423
TatI WGTACW 1 cut(s) 173
TfiI GAWTC 4 cut(s) 80, 157, 391, 457
Tru1I TTAA 5 cut(s) 21, 36, 372, 426, 553
Tru9I TTAA 5 cut(s) 21, 36, 372, 426, 553
TseI GCWGC 1 cut(s) 548
TspDTI ATGAA 3 cut(s) 149, 431, 449
VspI ATTAAT 1 cut(s) 426
XapI RAATTY 3 cut(s) 88, 295, 374
XbaI TCTAGA 1 cut(s) 239
XmiI GTMKAC 1 cut(s) 280
XmnI GAANNNNTTC 1 cut(s) 156
XspI CTAG 3 cut(s) 108, 240, 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.