Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

4560794 .. 4561868

Gene Structure 1075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G063800.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATAGCAAAGAAAGCCAATGATCACCATACGGGGTTGACAAGAATACTTACTCTGCGACGTGATTTGTTGAAGGGAGTGTCTCACGAGCCATTACTTGTTGTTGGACCGAGAAAACTTAAATTCTTTTTGGAAGCATACCAAAGACTTGAAGATTTGGATATGCATTTCTTTGATTGTAAGCACACCACCGAAGCTTCTTTACATGCTTTCGAGGGCGTTACTGAAACAAATAAGGATCACTCTTTTCTAGGAAGTCCAACTAGATCGCGTATGCAAAGCTATTGGAAGAGACCGGGTAGTCCTGTTGACAACAATGTAGTCTTCCCAATTTTAAAGAGCTTGCAAAAAGTGCTCGAGGAAGCAAGTTTGGAAGCCTTGATGAGTTTTCCTGTCATCCACTGCCCACAAGCATTTGGTGTTGTCTTGAGGGCTTTAGAGAGATTGAATAGTGTTGGAAAAGTGATTCCAGGTTGGAAGATTGTATACTCAGGTGATACCAGGCCCTGCCCGGAACTTACAGAAGCATCTCGTGGTGCAACAGTTCTTATACATGAGGCAACTTTCGAGGATGGCATGGTAGACGAGGCTATAGCACGAAACCACAGCACAACTAAGGAAGCCATAGAAGTTGGGAACTCTGCGGGTGTTTTTCGCATAATCCTTACCCACTTCAGCCAGCGATATCCAAAAATACCAGTATTTGATGAGACACACATGCATAAGACGTGCATCGGATTTGACATGATGAGTATTAACATAGCCGATTTCCCCGAGCTTCCAAAAATACTCCCATATTTGAAACTGCTTTTTAGAAACGAGATGATAATTGATGAATCTGATGAGGTTGTAGATGCTGCTGCAAGTGTAGCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0031123 GO:0034414 GO:0034470 GO:0034641 GO:0034660 GO:0042779 GO:0042780 GO:0042781 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043628 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0072684 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140053 GO:0140098 GO:1901360 GO:1905267

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Lactamase_B_2 Lactamase_B_4

Protein Analysis

292

Amino Acids

32.7

Weight (kDa)

6.24

Isoelectric Point (pI)

44.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	297
AccI	GTMKAC	2 cut(s)	483, 579
AccII	CGCG	1 cut(s)	268
AciI	CCGC	1 cut(s)	641
AclWI	GGATC	1 cut(s)	243
AcsI	RAATTY	1 cut(s)	119
AcuI	CTGAAG	1 cut(s)	655
AgsI	TTSAA	4 cut(s)	70, 149, 445, 799
AjiI	CACGTC	2 cut(s)	59, 726
AjnI	CCWGG	2 cut(s)	466, 497
AluBI	AGCT	5 cut(s)	194, 279, 339, 775, 869
AluI	AGCT	5 cut(s)	194, 279, 339, 775, 869
Alw21I	GWGCWC	1 cut(s)	354
Alw26I	GTCTC	3 cut(s)	84, 283, 701
AlwI	GGATC	1 cut(s)	243
AlwNI	CAGNNNCTG	1 cut(s)	504
Ama87I	CYCGRG	2 cut(s)	353, 770
AoxI	GGCC	1 cut(s)	500
ApeKI	GCWGC	2 cut(s)	854, 857
ApoI	RAATTY	1 cut(s)	119
AspS9I	GGNCC	2 cut(s)	104, 501
AsuC2I	CCSGG	2 cut(s)	294, 509
AsuHPI	GGTGA	2 cut(s)	14, 503
AvaI	CYCGRG	2 cut(s)	353, 770
AvaII	GGWCC	1 cut(s)	104
BarI	GAAGNNNNNNTAC	4 cut(s)	183, 215, 467, 499
BauI	CACGAG	2 cut(s)	83, 528
BbsI	GAAGAC	1 cut(s)	313
Bbv12I	GWGCWC	1 cut(s)	354
BbvI	GCAGC	2 cut(s)	841, 844
BccI	CCATC	1 cut(s)	563
BciT130I	CCWGG	2 cut(s)	468, 499
BclI	TGATCA	1 cut(s)	19
BcnI	CCSGG	2 cut(s)	294, 509
BcoDI	GTCTC	3 cut(s)	84, 283, 701
BfaI	CTAG	2 cut(s)	248, 261
BfmI	CTRYAG	1 cut(s)	588
BisI	GCNGC	2 cut(s)	855, 858
BlsI	GCNGC	2 cut(s)	856, 859
Bme1390I	CCNGG	4 cut(s)	294, 468, 499, 509
Bme18I	GGWCC	1 cut(s)	104
BmeT110I	CYCGRG	2 cut(s)	353, 770
BmgBI	CACGTC	2 cut(s)	59, 726
BmgT120I	GGNCC	2 cut(s)	104, 501
BmrFI	CCNGG	4 cut(s)	294, 468, 499, 509
BmsI	GCATC	3 cut(s)	533, 738, 841
BpiI	GAAGAC	1 cut(s)	313
BpuEI	CTTGAG	1 cut(s)	445
BpuMI	CCSGG	2 cut(s)	294, 509
BsaI	GGTCTC	1 cut(s)	283
Bse1I	ACTGG	1 cut(s)	695
BseBI	CCWGG	2 cut(s)	468, 499
BseGI	GGATG	2 cut(s)	393, 574
BseMII	CTCAG	1 cut(s)	501
BseNI	ACTGG	1 cut(s)	695
BseXI	GCAGC	2 cut(s)	841, 844
Bsh1236I	CGCG	1 cut(s)	268
BshFI	GGCC	1 cut(s)	502
BsiHKAI	GWGCWC	1 cut(s)	354
BsiHKCI	CYCGRG	2 cut(s)	353, 770
BsiSI	CCGG	2 cut(s)	293, 509
BsmAI	GTCTC	3 cut(s)	84, 283, 701
BsnI	GGCC	1 cut(s)	502
Bso31I	GGTCTC	1 cut(s)	283
BsoBI	CYCGRG	2 cut(s)	353, 770
Bsp1286I	GDGCHC	1 cut(s)	354
Bsp143I	GATC	3 cut(s)	19, 235, 263
BspACI	CCGC	1 cut(s)	641
BspANI	GGCC	1 cut(s)	502
BspCNI	CTCAG	1 cut(s)	500
BspFNI	CGCG	1 cut(s)	268
BspPI	GGATC	1 cut(s)	243
BspTNI	GGTCTC	1 cut(s)	283
BsrI	ACTGG	1 cut(s)	695
BssMI	GATC	3 cut(s)	19, 235, 263
BssNAI	GTATAC	1 cut(s)	484
BssSI	CACGAG	2 cut(s)	83, 528
Bst1107I	GTATAC	1 cut(s)	484
Bst2BI	CACGAG	2 cut(s)	83, 528
Bst2UI	CCWGG	2 cut(s)	468, 499
Bst4CI	ACNGT	1 cut(s)	541
Bst6I	CTCTTC	1 cut(s)	281
BstAPI	GCANNNNNTGC	1 cut(s)	349
BstC8I	GCNNGC	2 cut(s)	341, 677
BstDEI	CTNAG	2 cut(s)	487, 612
BstF5I	GGATG	2 cut(s)	393, 574
BstFNI	CGCG	1 cut(s)	268
BstKTI	GATC	3 cut(s)	22, 238, 266
BstMAI	GTCTC	3 cut(s)	84, 283, 701
BstMBI	GATC	3 cut(s)	19, 235, 263
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 349, 866
BstNI	CCWGG	2 cut(s)	468, 499
BstNSI	RCATGY	2 cut(s)	206, 718
BstSCI	CCNGG	4 cut(s)	292, 466, 497, 507
BstSFI	CTRYAG	1 cut(s)	588
BstUI	CGCG	1 cut(s)	268
BstV1I	GCAGC	2 cut(s)	841, 844
BstV2I	GAAGAC	1 cut(s)	313
BstZ17I	GTATAC	1 cut(s)	484
BsuRI	GGCC	1 cut(s)	502
BtrI	CACGTC	2 cut(s)	59, 726
BtsCI	GGATG	2 cut(s)	393, 574
BtsI	GCAGTG	1 cut(s)	397
BtsIMutI	CAGTG	1 cut(s)	397
Cac8I	GCNNGC	2 cut(s)	341, 677
CaiI	CAGNNNCTG	1 cut(s)	504
Cfr13I	GGNCC	2 cut(s)	104, 501
CviAII	CATG	5 cut(s)	203, 551, 574, 715, 742
DdeI	CTNAG	2 cut(s)	487, 612
DpnI	GATC	3 cut(s)	21, 237, 265
DpnII	GATC	3 cut(s)	19, 235, 263
DraI	TTTAAA	1 cut(s)	333
DrdI	GACNNNNNNGTC	1 cut(s)	297
DseDI	GACNNNNNNGTC	1 cut(s)	297
Eam1104I	CTCTTC	1 cut(s)	281
EarI	CTCTTC	1 cut(s)	281
Eco31I	GGTCTC	1 cut(s)	283
Eco32I	GATATC	1 cut(s)	683
Eco47I	GGWCC	1 cut(s)	104
Eco57I	CTGAAG	1 cut(s)	655
Eco88I	CYCGRG	2 cut(s)	353, 770
EcoO109I	RGGNCCY	1 cut(s)	501
EcoRII	CCWGG	2 cut(s)	466, 497
EcoRV	GATATC	1 cut(s)	683
EcoT22I	ATGCAT	2 cut(s)	165, 720
FaeI	CATG	5 cut(s)	206, 554, 577, 718, 745
FalI	AAGNNNNNCTT	1 cut(s)	853
FatI	CATG	5 cut(s)	202, 550, 573, 714, 741
FauI	CCCGC	1 cut(s)	634
FbaI	TGATCA	1 cut(s)	19
FblI	GTMKAC	2 cut(s)	483, 579
Fnu4HI	GCNGC	2 cut(s)	855, 858
FokI	GGATG	2 cut(s)	380, 581
Fsp4HI	GCNGC	2 cut(s)	855, 858
FspBI	CTAG	2 cut(s)	248, 261
GluI	GCNGC	2 cut(s)	855, 858
HaeIII	GGCC	1 cut(s)	502
HapII	CCGG	2 cut(s)	293, 509
Hin1II	CATG	5 cut(s)	206, 554, 577, 718, 745
HincII	GTYRAC	2 cut(s)	36, 307
HindII	GTYRAC	2 cut(s)	36, 307
HindIII	AAGCTT	1 cut(s)	192
HinfI	GANTC	2 cut(s)	463, 833
HpaII	CCGG	2 cut(s)	293, 509
HphI	GGTGA	2 cut(s)	14, 503
Hpy166II	GTNNAC	4 cut(s)	36, 307, 484, 580
Hpy188I	TCNGA	2 cut(s)	734, 838
Hpy188III	TCNNGA	3 cut(s)	83, 424, 873
Hpy8I	GTNNAC	4 cut(s)	36, 307, 484, 580
Hpy99I	CGWCG	1 cut(s)	60
HpyAV	CCTTC	1 cut(s)	64
HpyCH4III	ACNGT	1 cut(s)	541
HpyCH4IV	ACGT	2 cut(s)	58, 725
HpyCH4V	TGCA	7 cut(s)	163, 274, 343, 536, 718, 729, 860
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 349, 866
HpyF3I	CTNAG	2 cut(s)	487, 612
HpySE526I	ACGT	2 cut(s)	58, 725
Hsp92II	CATG	5 cut(s)	206, 554, 577, 718, 745
Ksp22I	TGATCA	1 cut(s)	19
Kzo9I	GATC	3 cut(s)	19, 235, 263
Lsp1109I	GCAGC	2 cut(s)	841, 844
LweI	GCATC	3 cut(s)	533, 738, 841
MaeI	CTAG	2 cut(s)	248, 261
MaeII	ACGT	2 cut(s)	58, 725
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	3 cut(s)	21, 237, 265
MboI	GATC	3 cut(s)	19, 235, 263
MboII	GAAGA	4 cut(s)	161, 298, 313, 487
MhlI	GDGCHC	1 cut(s)	354
MluCI	AATT	3 cut(s)	119, 327, 825
MmeI	TCCRAC	4 cut(s)	82, 281, 433, 452
MnlI	CCTC	7 cut(s)	205, 349, 420, 547, 559, 577, 835
Mph1103I	ATGCAT	2 cut(s)	165, 720
MseI	TTAA	3 cut(s)	117, 332, 753
MspI	CCGG	2 cut(s)	293, 509
MspR9I	CCNGG	4 cut(s)	294, 468, 499, 509
MvaI	CCWGG	2 cut(s)	468, 499
MvnI	CGCG	1 cut(s)	268
MwoI	GCNNNNNNNGC	3 cut(s)	11, 349, 866
NciI	CCSGG	2 cut(s)	294, 509
NdeII	GATC	3 cut(s)	19, 235, 263
NlaIII	CATG	5 cut(s)	206, 554, 577, 718, 745
NsiI	ATGCAT	2 cut(s)	165, 720
NspI	RCATGY	2 cut(s)	206, 718
PaeR7I	CTCGAG	1 cut(s)	353
PfeI	GAWTC	2 cut(s)	463, 833
PkrI	GCNGC	2 cut(s)	856, 859
Psp6I	CCWGG	2 cut(s)	466, 497
PspGI	CCWGG	2 cut(s)	466, 497
PspPI	GGNCC	2 cut(s)	104, 501
PspXI	VCTCGAGB	1 cut(s)	353
PstNI	CAGNNNCTG	1 cut(s)	504
SaqAI	TTAA	3 cut(s)	117, 332, 753
SatI	GCNGC	2 cut(s)	855, 858
Sau3AI	GATC	3 cut(s)	19, 235, 263
Sau96I	GGNCC	2 cut(s)	104, 501
ScrFI	CCNGG	4 cut(s)	294, 468, 499, 509
SduI	GDGCHC	1 cut(s)	354
SfaNI	GCATC	3 cut(s)	533, 738, 841
SfcI	CTRYAG	1 cut(s)	588
Sfr274I	CTCGAG	1 cut(s)	353
SinI	GGWCC	1 cut(s)	104
SlaI	CTCGAG	1 cut(s)	353
SmlI	CTYRAG	2 cut(s)	353, 424
SmoI	CTYRAG	2 cut(s)	353, 424
Sse9I	AATT	3 cut(s)	119, 327, 825
SsiI	CCGC	1 cut(s)	641
SspMI	CTAG	2 cut(s)	248, 261
StyD4I	CCNGG	4 cut(s)	292, 466, 497, 507
TaaI	ACNGT	1 cut(s)	541
TaiI	ACGT	2 cut(s)	61, 728
TaqI	TCGA	3 cut(s)	210, 354, 564
TaqII	GACCGA	1 cut(s)	121
TasI	AATT	3 cut(s)	119, 327, 825
TfiI	GAWTC	2 cut(s)	463, 833
Tru1I	TTAA	3 cut(s)	117, 332, 753
Tru9I	TTAA	3 cut(s)	117, 332, 753
TscAI	CASTG	1 cut(s)	404
TseI	GCWGC	2 cut(s)	854, 857
TspDTI	ATGAA	1 cut(s)	846
TspRI	CASTG	1 cut(s)	404
VpaK11BI	GGWCC	1 cut(s)	104
XapI	RAATTY	1 cut(s)	119
XceI	RCATGY	2 cut(s)	206, 718
XhoI	CTCGAG	1 cut(s)	353
XmiI	GTMKAC	2 cut(s)	483, 579
XspI	CTAG	2 cut(s)	248, 261
Zsp2I	ATGCAT	2 cut(s)	165, 720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.