Prupe.3G065600_v2.0.a1

cytoplasmic translation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
N/A
Physical Location & Seq
Reverse (-)
4729729 .. 4730236
508 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G065600.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 297 bp
ATGGCTCCTGCTGCGCCCAAGAGCGGGATCTTCGTTGCTCTGAACAAAGGCCACATTGTCACCAAGCGTGAATTGGCTCCTCGCCCATCTGACCGCAAAGGGAGCATCACTGAGCTTTTGAAGGTTGGTAAGAACAAGCGTGCTCTTAAGGTGGCCAAGAGAAAGTTGGGTACCCACAAGAGAGCTAAGAAAAAGAGATGTCCAACGTCCTCCGCAAGATGTGATGAGATTTTTCTCTTTGCCCTTGCTGTGTGTTTGATATGTTTTCATATGGGCTTTTGCATTTTTGTGTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000956 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006139 GO:0006401 GO:0006402 GO:0006412 GO:0006413 GO:0006518 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0015031 GO:0015833 GO:0015934 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0019538 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0034645 GO:0034655 GO:0042788 GO:0042886 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046483 GO:0046700 GO:0046907 GO:0048513 GO:0048519 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051726 GO:0060255 GO:0060322 GO:0065007 GO:0070013 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0090304 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03008 ko03010 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map03010 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169
Pfam Domains
Protein Families
Ribosomal_L36e

Protein Analysis

99

Amino Acids

10.84

Weight (kDa)

10.54

Isoelectric Point (pI)

50.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 170
AccB1I GGYRCC 1 cut(s) 170
AccBSI CCGCTC 1 cut(s) 24
AciI CCGC 3 cut(s) 24, 94, 213
AclWI GGATC 1 cut(s) 35
AcoI YGGCCR 1 cut(s) 153
AfaI GTAC 1 cut(s) 172
AfiI CCNNNNNNNGG 2 cut(s) 23, 24
AflII CTTAAG 1 cut(s) 146
AgsI TTSAA 1 cut(s) 121
AluBI AGCT 2 cut(s) 115, 185
AluI AGCT 2 cut(s) 115, 185
Alw21I GWGCWC 1 cut(s) 145
AlwI GGATC 1 cut(s) 35
AoxI GGCC 2 cut(s) 49, 153
ApeKI GCWGC 1 cut(s) 11
Asp718I GGTACC 1 cut(s) 170
AspLEI GCGC 1 cut(s) 16
AsuHPI GGTGA 1 cut(s) 52
BalI TGGCCA 1 cut(s) 155
BanI GGYRCC 1 cut(s) 170
Bbv12I GWGCWC 1 cut(s) 145
BccI CCATC 1 cut(s) 94
BfrI CTTAAG 1 cut(s) 146
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
BmiI GGNNCC 3 cut(s) 6, 78, 172
BmsI GCATC 1 cut(s) 114
Bsc4I CCNNNNNNNGG 2 cut(s) 23, 24
BseLI CCNNNNNNNGG 2 cut(s) 23, 24
BseMII CTCAG 1 cut(s) 102
BseRI GAGGAG 1 cut(s) 69
BshFI GGCC 2 cut(s) 51, 155
BshNI GGYRCC 1 cut(s) 170
BsiHKAI GWGCWC 1 cut(s) 145
BslI CCNNNNNNNGG 2 cut(s) 23, 24
BsnI GGCC 2 cut(s) 51, 155
Bsp1286I GDGCHC 1 cut(s) 145
Bsp143I GATC 1 cut(s) 27
BspACI CCGC 3 cut(s) 24, 94, 213
BspANI GGCC 2 cut(s) 51, 155
BspCNI CTCAG 1 cut(s) 103
BspLI GGNNCC 3 cut(s) 6, 78, 172
BspPI GGATC 1 cut(s) 35
BspT107I GGYRCC 1 cut(s) 170
BspTI CTTAAG 1 cut(s) 146
BsrBI CCGCTC 1 cut(s) 24
BssMI GATC 1 cut(s) 27
BstAFI CTTAAG 1 cut(s) 146
BstC8I GCNNGC 1 cut(s) 141
BstDEI CTNAG 2 cut(s) 111, 186
BstHHI GCGC 1 cut(s) 16
BstKTI GATC 1 cut(s) 30
BstMBI GATC 1 cut(s) 27
BstMWI GCNNNNNNNGC 2 cut(s) 11, 102
BstX2I RGATCY 1 cut(s) 27
BstYI RGATCY 1 cut(s) 27
BsuRI GGCC 2 cut(s) 51, 155
BtsIMutI CAGTG 1 cut(s) 108
Cac8I GCNNGC 1 cut(s) 141
CfoI GCGC 1 cut(s) 16
Csp6I GTAC 1 cut(s) 171
CviJI RGCY 7 cut(s) 5, 51, 77, 115, 155, 185, 276
CviKI_1 RGCY 7 cut(s) 5, 51, 77, 115, 155, 185, 276
CviQI GTAC 1 cut(s) 171
DdeI CTNAG 2 cut(s) 111, 186
DpnI GATC 1 cut(s) 29
DpnII GATC 1 cut(s) 27
EaeI YGGCCR 1 cut(s) 153
FaiI YATR 4 cut(s) 262, 270, 272, 295
FauI CCCGC 1 cut(s) 17
FauNDI CATATG 1 cut(s) 270
Fnu4HI GCNGC 1 cut(s) 12
Fsp4HI GCNGC 1 cut(s) 12
GlaI GCGC 1 cut(s) 15
GluI GCNGC 1 cut(s) 12
HaeIII GGCC 2 cut(s) 51, 155
HhaI GCGC 1 cut(s) 16
Hin6I GCGC 1 cut(s) 14
HinP1I GCGC 1 cut(s) 14
HphI GGTGA 1 cut(s) 52
Hpy188I TCNGA 2 cut(s) 42, 91
HpyAV CCTTC 1 cut(s) 115
HpyCH4IV ACGT 1 cut(s) 206
HpyCH4V TGCA 1 cut(s) 282
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 102
HpyF3I CTNAG 2 cut(s) 111, 186
HpySE526I ACGT 1 cut(s) 206
HspAI GCGC 1 cut(s) 14
KpnI GGTACC 1 cut(s) 174
Kzo9I GATC 1 cut(s) 27
LmnI GCTCC 3 cut(s) 10, 82, 102
LpnPI CCDG 1 cut(s) 21
LweI GCATC 1 cut(s) 114
MaeII ACGT 1 cut(s) 206
MaeIII GTNAC 1 cut(s) 58
MalI GATC 1 cut(s) 29
MbiI CCGCTC 1 cut(s) 24
MboI GATC 1 cut(s) 27
MboII GAAGA 1 cut(s) 22
MflI RGATCY 1 cut(s) 27
MhlI GDGCHC 1 cut(s) 145
MlsI TGGCCA 1 cut(s) 155
MluCI AATT 1 cut(s) 71
MluNI TGGCCA 1 cut(s) 155
MmeI TCCRAC 1 cut(s) 227
MnlI CCTC 2 cut(s) 90, 220
Mox20I TGGCCA 1 cut(s) 155
MscI TGGCCA 1 cut(s) 155
MseI TTAA 1 cut(s) 147
MslI CAYNNNNRTG 1 cut(s) 287
Msp20I TGGCCA 1 cut(s) 155
MspCI CTTAAG 1 cut(s) 146
MwoI GCNNNNNNNGC 2 cut(s) 11, 102
NdeI CATATG 1 cut(s) 270
NdeII GATC 1 cut(s) 27
NlaIV GGNNCC 3 cut(s) 6, 78, 172
NmuCI GTSAC 1 cut(s) 58
PkrI GCNGC 1 cut(s) 13
PspN4I GGNNCC 3 cut(s) 6, 78, 172
PsuI RGATCY 1 cut(s) 27
RsaI GTAC 1 cut(s) 172
RsaNI GTAC 1 cut(s) 171
RseI CAYNNNNRTG 1 cut(s) 287
SaqAI TTAA 1 cut(s) 147
SatI GCNGC 1 cut(s) 12
Sau3AI GATC 1 cut(s) 27
SduI GDGCHC 1 cut(s) 145
SetI ASST 5 cut(s) 117, 126, 153, 187, 209
SfaNI GCATC 1 cut(s) 114
SmiMI CAYNNNNRTG 1 cut(s) 287
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
Sse9I AATT 1 cut(s) 71
SsiI CCGC 3 cut(s) 24, 94, 213
TaiI ACGT 1 cut(s) 209
TasI AATT 1 cut(s) 71
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TscAI CASTG 1 cut(s) 115
TseFI GTSAC 1 cut(s) 58
TseI GCWGC 1 cut(s) 11
Tsp45I GTSAC 1 cut(s) 58
TspDTI ATGAA 1 cut(s) 257
TspRI CASTG 1 cut(s) 115
Vha464I CTTAAG 1 cut(s) 146
XcmI CCANNNNNNNNNTGG 2 cut(s) 70, 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.