Prupe.3G066800_v2.0.a1

DnaJ protein homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
N/A
Physical Location & Seq
Reverse (-)
4810578 .. 4811724
1147 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G066800.1_v2.0.a1.CDS.4

Sequence Viewer

Length: 732 bp
ATGGGTGGCGGAGGTGGCGGTCATGACCCATTTGATATTTTCCAATCCTTCTTTGGTGGTGGTGGAAGCAGCAGAGGCCGAAGGCAGAGGAGGGGAGAGGATGTGATCCATCCCCTCAAGGTTTATTTGGAAGATCTCTACAATGGGACATCCAAAAAGCTTTCTCTCTCTCGCAGCATAATCTGCTCCAAGTGCGCGGGGTTGGGTCAAAAATCAGTTGCTTCTTTGAAATGTCCTGGGTGCCAAGGTTCTGGAATGAAAGTCTCTATTAGACACCTCGGCCCCTCCATGATCCAGCAAATGCAGCATCCTTGCAATGAGTGCAAGGGTACTGAGGAGACCATTAATGACAAGGATCGCTGCACACAATGTAAGGGTGAGAAGGTTGTTCAGGAAAAGAAAGTCTTGGAAGTCATTGTGGAGAAGGGTATGCAAAATGGTCAGAGGATCACGTTCCCTGGCGAAGCTGATGAAGCGGTAGCCACACACCATCACAGGGATATCGTTTTTGCCCTACAACAAAAAGAGCACCCAAAGTTTAAGCATAAGGGTGATTACCTGTTCTTTGAGCACAACTTATCCCTCGTAGAAGCACCCTGTGGCTTCCACTTTGTATTGACACATTTAGATGGAAGACATCTCCTCATCAAATCGCAACCTGGTGATATGGATGATTGGCAAACGCATTCTCCTCAGATTTTATCTATACTACCTTTCTTAGGTGTAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

244

Amino Acids

26.88

Weight (kDa)

8.34

Isoelectric Point (pI)

38.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 240
AccII CGCG 1 cut(s) 197
AciI CCGC 4 cut(s) 9, 18, 197, 476
AclWI GGATC 4 cut(s) 100, 286, 363, 455
AdeI CACNNNGTG 1 cut(s) 599
AfaI GTAC 1 cut(s) 331
AfiI CCNNNNNNNGG 2 cut(s) 496, 719
AgsI TTSAA 1 cut(s) 229
AjnI CCWGG 3 cut(s) 235, 457, 658
AluBI AGCT 3 cut(s) 160, 467, 728
AluI AGCT 3 cut(s) 160, 467, 728
Alw21I GWGCWC 2 cut(s) 531, 573
Alw26I GTCTC 2 cut(s) 268, 332
AlwI GGATC 4 cut(s) 100, 286, 363, 455
AoxI GGCC 2 cut(s) 76, 280
ApeKI GCWGC 4 cut(s) 69, 174, 304, 360
AseI ATTAAT 1 cut(s) 345
AspLEI GCGC 1 cut(s) 197
AspS9I GGNCC 1 cut(s) 281
AsuHPI GGTGA 3 cut(s) 389, 563, 674
BanI GGYRCC 1 cut(s) 240
BbsI GAAGAC 1 cut(s) 640
Bbv12I GWGCWC 2 cut(s) 531, 573
BbvI GCAGC 4 cut(s) 81, 186, 316, 347
BccI CCATC 3 cut(s) 117, 498, 623
BciT130I CCWGG 3 cut(s) 237, 459, 660
BcoDI GTCTC 2 cut(s) 268, 332
BglII AGATCT 1 cut(s) 133
BisI GCNGC 4 cut(s) 70, 175, 305, 361
BlsI GCNGC 4 cut(s) 71, 176, 306, 362
Bme1390I CCNGG 3 cut(s) 237, 459, 660
BmgT120I GGNCC 1 cut(s) 281
BmiI GGNNCC 2 cut(s) 242, 283
BmrFI CCNGG 3 cut(s) 237, 459, 660
BmsI GCATC 1 cut(s) 316
BpiI GAAGAC 1 cut(s) 640
BpuEI CTTGAG 1 cut(s) 101
BsaI GGTCTC 1 cut(s) 332
BsaJI CCNNGG 4 cut(s) 236, 244, 277, 457
BsaXI ACNNNNNCTCC 4 cut(s) 87, 117, 673, 703
Bsc4I CCNNNNNNNGG 2 cut(s) 496, 719
Bse3DI GCAATG 1 cut(s) 322
BseBI CCWGG 3 cut(s) 237, 459, 660
BseDI CCNNGG 4 cut(s) 236, 244, 277, 457
BseGI GGATG 5 cut(s) 106, 109, 149, 307, 676
BseLI CCNNNNNNNGG 2 cut(s) 496, 719
BseMI GCAATG 1 cut(s) 322
BseMII CTCAG 2 cut(s) 324, 707
BseRI GAGGAG 4 cut(s) 103, 350, 632, 681
BseXI GCAGC 4 cut(s) 81, 186, 316, 347
BsgI GTGCAG 1 cut(s) 346
Bsh1236I CGCG 1 cut(s) 197
BshFI GGCC 2 cut(s) 78, 282
BshNI GGYRCC 1 cut(s) 240
BsiHKAI GWGCWC 2 cut(s) 531, 573
BslFI GGGAC 1 cut(s) 160
BslI CCNNNNNNNGG 2 cut(s) 496, 719
BsmAI GTCTC 2 cut(s) 268, 332
BsmFI GGGAC 1 cut(s) 160
BsmI GAATGC 1 cut(s) 685
BsnI GGCC 2 cut(s) 78, 282
Bso31I GGTCTC 1 cut(s) 332
Bsp1286I GDGCHC 2 cut(s) 531, 573
Bsp143I GATC 5 cut(s) 105, 133, 291, 355, 447
BspACI CCGC 4 cut(s) 9, 18, 197, 476
BspANI GGCC 2 cut(s) 78, 282
BspCNI CTCAG 2 cut(s) 325, 706
BspFNI CGCG 1 cut(s) 197
BspHI TCATGA 1 cut(s) 22
BspLI GGNNCC 2 cut(s) 242, 283
BspPI GGATC 4 cut(s) 100, 286, 363, 455
BspT107I GGYRCC 1 cut(s) 240
BspTNI GGTCTC 1 cut(s) 332
BsrDI GCAATG 1 cut(s) 322
BssECI CCNNGG 4 cut(s) 236, 244, 277, 457
BssMI GATC 5 cut(s) 105, 133, 291, 355, 447
BssT1I CCWWGG 1 cut(s) 244
Bst2UI CCWGG 3 cut(s) 237, 459, 660
BstAPI GCANNNNNTGC 2 cut(s) 183, 321
BstDEI CTNAG 3 cut(s) 333, 693, 718
BstENI CCTNNNNNAGG 1 cut(s) 717
BstF5I GGATG 5 cut(s) 106, 109, 149, 307, 676
BstFNI CGCG 1 cut(s) 197
BstHHI GCGC 1 cut(s) 197
BstKTI GATC 5 cut(s) 108, 136, 294, 358, 450
BstMAI GTCTC 2 cut(s) 268, 332
BstMBI GATC 5 cut(s) 105, 133, 291, 355, 447
BstMWI GCNNNNNNNGC 7 cut(s) 15, 75, 183, 192, 304, 321, 473
BstNI CCWGG 3 cut(s) 237, 459, 660
BstSCI CCNGG 3 cut(s) 235, 457, 658
BstUI CGCG 1 cut(s) 197
BstV1I GCAGC 4 cut(s) 81, 186, 316, 347
BstV2I GAAGAC 1 cut(s) 640
BstX2I RGATCY 1 cut(s) 133
BstXI CCANNNNNNTGG 1 cut(s) 251
BstYI RGATCY 1 cut(s) 133
BsuRI GGCC 2 cut(s) 78, 282
BtsCI GGATG 5 cut(s) 106, 109, 149, 307, 676
CciI TCATGA 1 cut(s) 22
CfoI GCGC 1 cut(s) 197
Cfr13I GGNCC 1 cut(s) 281
CsiI ACCWGGT 1 cut(s) 658
Csp6I GTAC 1 cut(s) 330
CviAII CATG 2 cut(s) 23, 289
CviJI RGCY 7 cut(s) 78, 160, 282, 467, 482, 603, 728
CviKI_1 RGCY 7 cut(s) 78, 160, 282, 467, 482, 603, 728
CviQI GTAC 1 cut(s) 330
DdeI CTNAG 3 cut(s) 333, 693, 718
DpnI GATC 5 cut(s) 107, 135, 293, 357, 449
DpnII GATC 5 cut(s) 105, 133, 291, 355, 447
DraIII CACNNNGTG 1 cut(s) 599
EciI GGCGGA 1 cut(s) 24
Eco130I CCWWGG 1 cut(s) 244
Eco31I GGTCTC 1 cut(s) 332
Eco32I GATATC 1 cut(s) 502
EcoNI CCTNNNNNAGG 1 cut(s) 717
EcoRII CCWGG 3 cut(s) 235, 457, 658
EcoRV GATATC 1 cut(s) 502
EcoT14I CCWWGG 1 cut(s) 244
ErhI CCWWGG 1 cut(s) 244
FaeI CATG 2 cut(s) 26, 292
FaiI YATR 7 cut(s) 24, 179, 290, 431, 546, 668, 707
FalI AAGNNNNNCTT 2 cut(s) 389, 421
FaqI GGGAC 1 cut(s) 160
FatI CATG 2 cut(s) 22, 288
FauI CCCGC 1 cut(s) 190
Fnu4HI GCNGC 4 cut(s) 70, 175, 305, 361
FokI GGATG 5 cut(s) 96, 113, 136, 294, 683
Fsp4HI GCNGC 4 cut(s) 70, 175, 305, 361
GlaI GCGC 1 cut(s) 196
GluI GCNGC 4 cut(s) 70, 175, 305, 361
HaeIII GGCC 2 cut(s) 78, 282
HhaI GCGC 1 cut(s) 197
Hin1II CATG 2 cut(s) 26, 292
Hin6I GCGC 1 cut(s) 195
HinP1I GCGC 1 cut(s) 195
HindIII AAGCTT 1 cut(s) 158
HphI GGTGA 3 cut(s) 389, 563, 674
Hpy188I TCNGA 2 cut(s) 444, 696
Hpy188III TCNNGA 3 cut(s) 23, 252, 392
HpyAV CCTTC 4 cut(s) 58, 75, 376, 418
HpyCH4IV ACGT 1 cut(s) 452
HpyCH4V TGCA 5 cut(s) 304, 315, 324, 363, 433
HpyF10VI GCNNNNNNNGC 7 cut(s) 15, 75, 183, 192, 304, 321, 473
HpyF3I CTNAG 3 cut(s) 333, 693, 718
HpySE526I ACGT 1 cut(s) 452
Hsp92II CATG 2 cut(s) 26, 292
HspAI GCGC 1 cut(s) 195
Kzo9I GATC 5 cut(s) 105, 133, 291, 355, 447
LmnI GCTCC 1 cut(s) 191
Lsp1109I GCAGC 4 cut(s) 81, 186, 316, 347
LweI GCATC 1 cut(s) 316
MabI ACCWGGT 1 cut(s) 658
MaeII ACGT 1 cut(s) 452
MalI GATC 5 cut(s) 107, 135, 293, 357, 449
MboI GATC 5 cut(s) 105, 133, 291, 355, 447
MboII GAAGA 2 cut(s) 143, 645
MflI RGATCY 1 cut(s) 133
MhlI GDGCHC 2 cut(s) 531, 573
MseI TTAA 2 cut(s) 345, 540
MslI CAYNNNNRTG 2 cut(s) 549, 627
MspR9I CCNGG 3 cut(s) 237, 459, 660
Mva1269I GAATGC 1 cut(s) 685
MvaI CCWGG 3 cut(s) 237, 459, 660
MvnI CGCG 1 cut(s) 197
MwoI GCNNNNNNNGC 7 cut(s) 15, 75, 183, 192, 304, 321, 473
NdeII GATC 5 cut(s) 105, 133, 291, 355, 447
NlaIII CATG 2 cut(s) 26, 292
NlaIV GGNNCC 2 cut(s) 242, 283
NmeAIII GCCGAG 1 cut(s) 258
PagI TCATGA 1 cut(s) 22
PctI GAATGC 1 cut(s) 685
PkrI GCNGC 4 cut(s) 71, 176, 306, 362
PshBI ATTAAT 1 cut(s) 345
Psp6I CCWGG 3 cut(s) 235, 457, 658
PspGI CCWGG 3 cut(s) 235, 457, 658
PspN4I GGNNCC 2 cut(s) 242, 283
PspPI GGNCC 1 cut(s) 281
PsuI RGATCY 1 cut(s) 133
RsaI GTAC 1 cut(s) 331
RsaNI GTAC 1 cut(s) 330
RseI CAYNNNNRTG 2 cut(s) 549, 627
SaqAI TTAA 2 cut(s) 345, 540
SatI GCNGC 4 cut(s) 70, 175, 305, 361
Sau3AI GATC 5 cut(s) 105, 133, 291, 355, 447
Sau96I GGNCC 1 cut(s) 281
ScrFI CCNGG 3 cut(s) 237, 459, 660
SduI GDGCHC 2 cut(s) 531, 573
SexAI ACCWGGT 1 cut(s) 658
SfaNI GCATC 1 cut(s) 316
SmiMI CAYNNNNRTG 2 cut(s) 549, 627
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
SsiI CCGC 4 cut(s) 9, 18, 197, 476
StyD4I CCNGG 3 cut(s) 235, 457, 658
StyI CCWWGG 1 cut(s) 244
TaiI ACGT 1 cut(s) 455
Tru1I TTAA 2 cut(s) 345, 540
Tru9I TTAA 2 cut(s) 345, 540
TseI GCWGC 4 cut(s) 69, 174, 304, 360
TspDTI ATGAA 2 cut(s) 272, 486
VspI ATTAAT 1 cut(s) 345
XagI CCTNNNNNAGG 1 cut(s) 717
XcmI CCANNNNNNNNNTGG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.