Prupe.3G067000_v2.0.a1

membrane

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
N/A
Physical Location & Seq
Forward (+)
4827103 .. 4828470
1368 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G067000.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 603 bp
ATGGCAATCAAACAACTAATCGACTCCCCTAGTTTGACAAATGATGCATTGTGTTTTGTCCCTATTGTATGTTCTTCATTTACAGAGAGATTGTGGAATATTAGTTTCATAGTATTTTGTAGAGTTCACCTTGAGTACTACACAAGTGACTACACTGCTCAGGTTTTGTTGGGGTACTACATGGTTTATATATTTATGACGACTTTCATGATCCCTGGTACTGTATTCATGTCCTTGCTTGTTGGTTCCCTTTTTGGGGTTTTCAGAGGTATAGCTTTTGTGGTTTTCAATGCCACTACTAGTGCATCTTCTTGTTATTTCTTATCAAAGTTGATAGGGAGGCCCATTGTCTTTTCTCTTTGGCCTGACAAGCTGCAGAATGAGTCATTTATTTTTCTTCCAGTGGATGTACCCTATCATATTTTCTTCATAGCAACCATAATTGGTTTGATTCTAGCTAGGTATGTCACTGTCAGGGTTGGATTAGCTCTTGGAGATTTGCGATCCCATGGGGATCTGTATGATTTCAACTCAATAGCCACCTTGTTCTTCATCGGAGTTGTCTCAGTTACTCCCATGTTTGTGGCATCTGTCCACGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNARE_assoc

Protein Analysis

201

Amino Acids

22.48

Weight (kDa)

6.38

Isoelectric Point (pI)

35.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 205, 498, 522
AfaI GTAC 4 cut(s) 137, 176, 220, 411
AfiI CCNNNNNNNGG 2 cut(s) 255, 256
AgsI TTSAA 2 cut(s) 289, 529
AhlI ACTAGT 1 cut(s) 299
AjnI CCWGG 1 cut(s) 214
AluBI AGCT 4 cut(s) 275, 373, 458, 488
AluI AGCT 4 cut(s) 275, 373, 458, 488
Alw26I GTCTC 1 cut(s) 568
AlwI GGATC 3 cut(s) 205, 498, 522
AoxI GGCC 2 cut(s) 341, 362
ApeKI GCWGC 1 cut(s) 373
AspS9I GGNCC 1 cut(s) 342
AsuHPI GGTGA 1 cut(s) 119
BbvI GCAGC 1 cut(s) 360
BciT130I CCWGG 1 cut(s) 216
BcoDI GTCTC 1 cut(s) 568
BcuI ACTAGT 1 cut(s) 299
BfaI CTAG 4 cut(s) 30, 300, 455, 459
BfmI CTRYAG 1 cut(s) 374
BisI GCNGC 1 cut(s) 374
BlsI GCNGC 1 cut(s) 375
BmcAI AGTACT 1 cut(s) 137
Bme1390I CCNGG 1 cut(s) 216
BmgT120I GGNCC 1 cut(s) 342
BmiI GGNNCC 1 cut(s) 247
BmrFI CCNGG 1 cut(s) 216
BmsI GCATC 3 cut(s) 34, 314, 596
Bpu10I CCTNAGC 1 cut(s) 159
BpuEI CTTGAG 1 cut(s) 152
BsaJI CCNNGG 2 cut(s) 214, 508
Bsc4I CCNNNNNNNGG 2 cut(s) 255, 256
Bse1I ACTGG 1 cut(s) 401
BseBI CCWGG 1 cut(s) 216
BseDI CCNNGG 2 cut(s) 214, 508
BseGI GGATG 1 cut(s) 412
BseLI CCNNNNNNNGG 2 cut(s) 255, 256
BseMII CTCAG 2 cut(s) 173, 579
BseNI ACTGG 1 cut(s) 401
BseXI GCAGC 1 cut(s) 360
BshFI GGCC 2 cut(s) 343, 364
BslFI GGGAC 1 cut(s) 44
BslI CCNNNNNNNGG 2 cut(s) 255, 256
BsmAI GTCTC 1 cut(s) 568
BsmFI GGGAC 1 cut(s) 44
BsnI GGCC 2 cut(s) 343, 364
Bsp143I GATC 3 cut(s) 210, 503, 514
Bsp19I CCATGG 1 cut(s) 508
BspANI GGCC 2 cut(s) 343, 364
BspCNI CTCAG 2 cut(s) 172, 578
BspHI TCATGA 1 cut(s) 207
BspLI GGNNCC 1 cut(s) 247
BspMAI CTGCAG 1 cut(s) 378
BspPI GGATC 3 cut(s) 205, 498, 522
BsrI ACTGG 1 cut(s) 401
BssECI CCNNGG 2 cut(s) 214, 508
BssMI GATC 3 cut(s) 210, 503, 514
BssT1I CCWWGG 1 cut(s) 508
Bst2UI CCWGG 1 cut(s) 216
Bst4CI ACNGT 2 cut(s) 223, 472
BstDEI CTNAG 2 cut(s) 159, 565
BstDSI CCRYGG 1 cut(s) 508
BstF5I GGATG 1 cut(s) 412
BstKTI GATC 3 cut(s) 213, 506, 517
BstMAI GTCTC 1 cut(s) 568
BstMBI GATC 3 cut(s) 210, 503, 514
BstMWI GCNNNNNNNGC 1 cut(s) 370
BstNI CCWGG 1 cut(s) 216
BstSCI CCNGG 1 cut(s) 214
BstSFI CTRYAG 1 cut(s) 374
BstV1I GCAGC 1 cut(s) 360
BstX2I RGATCY 1 cut(s) 514
BstXI CCANNNNNNTGG 1 cut(s) 583
BstYI RGATCY 1 cut(s) 514
BsuRI GGCC 2 cut(s) 343, 364
BtgI CCRYGG 1 cut(s) 508
BtsCI GGATG 1 cut(s) 412
BtsI GCAGTG 1 cut(s) 153
BtsIMutI CAGTG 3 cut(s) 153, 408, 468
CciI TCATGA 1 cut(s) 207
Cfr13I GGNCC 1 cut(s) 342
Csp6I GTAC 4 cut(s) 136, 175, 219, 410
CviAII CATG 5 cut(s) 181, 208, 229, 509, 577
CviJI RGCY 7 cut(s) 275, 343, 364, 373, 458, 488, 539
CviKI_1 RGCY 7 cut(s) 275, 343, 364, 373, 458, 488, 539
CviQI GTAC 4 cut(s) 136, 175, 219, 410
DdeI CTNAG 2 cut(s) 159, 565
DpnI GATC 3 cut(s) 212, 505, 516
DpnII GATC 3 cut(s) 210, 503, 514
Eco130I CCWWGG 1 cut(s) 508
EcoRII CCWGG 1 cut(s) 214
EcoT14I CCWWGG 1 cut(s) 508
EcoT22I ATGCAT 1 cut(s) 49
ErhI CCWWGG 1 cut(s) 508
FaeI CATG 5 cut(s) 184, 211, 232, 512, 580
FaqI GGGAC 1 cut(s) 44
FatI CATG 5 cut(s) 180, 207, 228, 508, 576
Fnu4HI GCNGC 1 cut(s) 374
FokI GGATG 1 cut(s) 419
Fsp4HI GCNGC 1 cut(s) 374
FspBI CTAG 4 cut(s) 30, 300, 455, 459
GluI GCNGC 1 cut(s) 374
HaeIII GGCC 2 cut(s) 343, 364
Hin1II CATG 5 cut(s) 184, 211, 232, 512, 580
HinfI GANTC 3 cut(s) 23, 383, 451
HphI GGTGA 1 cut(s) 119
Hpy166II GTNNAC 2 cut(s) 127, 595
Hpy188I TCNGA 2 cut(s) 266, 557
Hpy188III TCNNGA 1 cut(s) 208
Hpy8I GTNNAC 2 cut(s) 127, 595
HpyCH4III ACNGT 2 cut(s) 223, 472
HpyCH4IV ACGT 1 cut(s) 597
HpyCH4V TGCA 3 cut(s) 47, 305, 376
HpyF10VI GCNNNNNNNGC 1 cut(s) 370
HpyF3I CTNAG 2 cut(s) 159, 565
HpySE526I ACGT 1 cut(s) 597
Hsp92II CATG 5 cut(s) 184, 211, 232, 512, 580
Kzo9I GATC 3 cut(s) 210, 503, 514
LpnPI CCDG 6 cut(s) 146, 201, 228, 378, 414, 460
Lsp1109I GCAGC 1 cut(s) 360
LweI GCATC 3 cut(s) 34, 314, 596
MaeI CTAG 4 cut(s) 30, 300, 455, 459
MaeII ACGT 1 cut(s) 597
MaeIII GTNAC 3 cut(s) 146, 466, 568
MalI GATC 3 cut(s) 212, 505, 516
MboI GATC 3 cut(s) 210, 503, 514
MboII GAAGA 5 cut(s) 66, 300, 389, 418, 541
MflI RGATCY 1 cut(s) 514
MluCI AATT 1 cut(s) 441
MlyI GAGTC 2 cut(s) 17, 392
MmeI TCCRAC 1 cut(s) 460
MnlI CCTC 2 cut(s) 260, 333
Mph1103I ATGCAT 1 cut(s) 49
MslI CAYNNNNRTG 1 cut(s) 581
MspR9I CCNGG 1 cut(s) 216
MvaI CCWGG 1 cut(s) 216
MwoI GCNNNNNNNGC 1 cut(s) 370
NcoI CCATGG 1 cut(s) 508
NdeII GATC 3 cut(s) 210, 503, 514
NlaIII CATG 5 cut(s) 184, 211, 232, 512, 580
NlaIV GGNNCC 1 cut(s) 247
NmuCI GTSAC 2 cut(s) 146, 466
NsiI ATGCAT 1 cut(s) 49
PagI TCATGA 1 cut(s) 207
PfeI GAWTC 1 cut(s) 451
PkrI GCNGC 1 cut(s) 375
PleI GAGTC 2 cut(s) 17, 391
PpsI GAGTC 2 cut(s) 17, 391
Psp6I CCWGG 1 cut(s) 214
PspGI CCWGG 1 cut(s) 214
PspN4I GGNNCC 1 cut(s) 247
PspPI GGNCC 1 cut(s) 342
PstI CTGCAG 1 cut(s) 378
PsuI RGATCY 1 cut(s) 514
RsaI GTAC 4 cut(s) 137, 176, 220, 411
RsaNI GTAC 4 cut(s) 136, 175, 219, 410
RseI CAYNNNNRTG 1 cut(s) 581
SatI GCNGC 1 cut(s) 374
Sau3AI GATC 3 cut(s) 210, 503, 514
Sau96I GGNCC 1 cut(s) 342
ScaI AGTACT 1 cut(s) 137
SchI GAGTC 2 cut(s) 17, 392
ScrFI CCNGG 1 cut(s) 216
SfaNI GCATC 3 cut(s) 34, 314, 596
SfcI CTRYAG 1 cut(s) 374
SmiMI CAYNNNNRTG 1 cut(s) 581
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
SpeI ACTAGT 1 cut(s) 299
Sse9I AATT 1 cut(s) 441
SspI AATATT 1 cut(s) 100
SspMI CTAG 4 cut(s) 30, 300, 455, 459
StyD4I CCNGG 1 cut(s) 214
StyI CCWWGG 1 cut(s) 508
TaaI ACNGT 2 cut(s) 223, 472
TaiI ACGT 1 cut(s) 600
TaqI TCGA 1 cut(s) 21
TasI AATT 1 cut(s) 441
TatI WGTACW 1 cut(s) 135
TfiI GAWTC 1 cut(s) 451
TscAI CASTG 3 cut(s) 160, 408, 475
TseFI GTSAC 2 cut(s) 146, 466
TseI GCWGC 1 cut(s) 373
Tsp45I GTSAC 2 cut(s) 146, 466
TspDTI ATGAA 6 cut(s) 66, 97, 196, 217, 418, 541
TspRI CASTG 3 cut(s) 160, 408, 475
XspI CTAG 4 cut(s) 30, 300, 455, 459
ZrmI AGTACT 1 cut(s) 137
Zsp2I ATGCAT 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.