Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

5020724 .. 5022874

Gene Structure 2151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G069600.1_v2.0.a1.CDS.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGAGTGGTTATATGGTAGATGGGAAACTGGATCATATGTGGCAAGATTTCCTTGCTTCAAGGTTTGGGAAAGAGTTTGTGGCAGGAGGGTGTGGAGGGATTGCTGGTGTGCTGTCTGGTTATCCACTTGACACTCTGAGGGTGAGGCAGCAGCATTCAAAGAGTGGTTCTGCTTTCAGCATACTTCGCAATGTCATCTCTGCTGAAGGCCCTACTGCCCTCTACAGAGGCATTGCTGCTCCCTTGGCCTCTGTCACTTTCCAGAATGCCATGGTTTTCCAGATAAACTCCATTCTCTGTCGAGCATTTAACTCATCTGCTTCCACTAAAGACCCTGCTCCTTACAAAGCTGTTGCTCTAGGAGGATTTGCTACAGGTGCTGTTCAGAGCCTAATCCTCAGCCCCATAGAACTCGTAAAAATCCGGCTTCAACTGCAAAACATTCAAGCATATGTAAACGCAAAATCTCATCAACTGCAATCCCACAGAGGCCCTATAGATGTTGCCAAAGCCATTATGAAAGCCGAAGGCTTACGGGGAATATATCGTGGTCTAGGCATTACTGTTCTGAGGGATGCACCTTCATTTTGTTTCTACTTCTCGACTTATGAGTACATGAGAGAGAAGCTTCACCCGGGCTGCAGAAAGAGTGGCAAAGAGAGCATGCGAACAATGATGCTGGCAGGAGGGCTAGCAGGGGTAGCAAGTTGGCTGTTTGTTTATCCCTTGGATGTTGTGAAAACCAGATGGCAGGCTCAATCTGTATCCCCGAACTACAATGGCATAGTCGATTGCTTCCAGAAGAGCGTCAGAGAGGGAGGATACCGAGTGCTCTGGCGGGGACTGGGAACCGCGGTTGTTAGAGCGTTTCTGGTGAATGGAGCCATTTTTCCTGCTTATGAGATTGCTCTGAGGTTCCTACAAAGCAATGAAACCATTCCAGCAGTGAGTGCAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000064 GO:0003333 GO:0003674 GO:0005215 GO:0005287 GO:0005289 GO:0005290 GO:0005292 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006844 GO:0006855 GO:0006865 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008324 GO:0008509 GO:0008514 GO:0008519 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009628 GO:0009987 GO:0015075 GO:0015101 GO:0015171 GO:0015174 GO:0015179 GO:0015181 GO:0015189 GO:0015227 GO:0015238 GO:0015318 GO:0015651 GO:0015695 GO:0015696 GO:0015697 GO:0015711 GO:0015802 GO:0015807 GO:0015809 GO:0015822 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0016053 GO:0018130 GO:0019752 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045117 GO:0046394 GO:0046483 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0055085 GO:0071702 GO:0071704 GO:0071705 GO:0072488 GO:0089709 GO:0098655 GO:0098656 GO:1901360 GO:1901362 GO:1901474 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902022 GO:1902023 GO:1902475 GO:1902616 GO:1903352 GO:1903400 GO:1903401 GO:1903825 GO:1903826 GO:1905039 GO:1990542 GO:1990575 GO:1990822

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

320

Amino Acids

34.75

Weight (kDa)

9.75

Isoelectric Point (pI)

38.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	854
AciI	CCGC	3 cut(s)	838, 852, 854
AclWI	GGATC	1 cut(s)	39
AcuI	CTGAAG	1 cut(s)	225
AfaI	GTAC	1 cut(s)	614
AgsI	TTSAA	4 cut(s)	60, 159, 431, 446
AluBI	AGCT	2 cut(s)	350, 628
AluI	AGCT	2 cut(s)	350, 628
Alw21I	GWGCWC	1 cut(s)	834
AlwI	GGATC	1 cut(s)	39
AlwNI	CAGNNNCTG	1 cut(s)	380
Ama87I	CYCGRG	1 cut(s)	634
AoxI	GGCC	3 cut(s)	208, 246, 490
ApeKI	GCWGC	4 cut(s)	148, 151, 236, 639
Asp700I	GAANNNNTTC	1 cut(s)	936
AspS9I	GGNCC	2 cut(s)	209, 491
AsuC2I	CCSGG	2 cut(s)	635, 636
AsuHPI	GGTGA	3 cut(s)	154, 623, 886
AsuNHI	GCTAGC	1 cut(s)	691
AvaI	CYCGRG	1 cut(s)	634
Bbv12I	GWGCWC	1 cut(s)	834
BbvCI	CCTCAGC	1 cut(s)	398
BbvI	GCAGC	4 cut(s)	160, 163, 223, 626
BccI	CCATC	2 cut(s)	14, 741
BciVI	GTATCC	2 cut(s)	775, 815
BcnI	CCSGG	2 cut(s)	635, 636
BfaI	CTAG	4 cut(s)	359, 554, 692, 958
BfmI	CTRYAG	4 cut(s)	223, 372, 495, 640
BfuI	GTATCC	2 cut(s)	775, 815
BisI	GCNGC	4 cut(s)	149, 152, 237, 640
BlsI	GCNGC	4 cut(s)	150, 153, 238, 641
Bme1390I	CCNGG	2 cut(s)	635, 636
BmeT110I	CYCGRG	1 cut(s)	634
BmgT120I	GGNCC	2 cut(s)	209, 491
BmiI	GGNNCC	3 cut(s)	850, 883, 917
BmrFI	CCNGG	2 cut(s)	635, 636
BmrI	ACTGGG	1 cut(s)	854
BmsI	GCATC	2 cut(s)	565, 666
BmtI	GCTAGC	1 cut(s)	695
BmuI	ACTGGG	1 cut(s)	854
Bpu10I	CCTNAGC	1 cut(s)	398
BpuMI	CCSGG	2 cut(s)	635, 636
BsaJI	CCNNGG	5 cut(s)	243, 270, 634, 726, 852
Bse1I	ACTGG	2 cut(s)	33, 849
Bse3DI	GCAATG	3 cut(s)	196, 231, 934
BseDI	CCNNGG	5 cut(s)	243, 270, 634, 726, 852
BseGI	GGATG	2 cut(s)	580, 736
BseMI	GCAATG	3 cut(s)	196, 231, 934
BseMII	CTCAG	4 cut(s)	128, 412, 560, 902
BseNI	ACTGG	2 cut(s)	33, 849
BseXI	GCAGC	4 cut(s)	160, 163, 223, 626
Bsh1236I	CGCG	1 cut(s)	854
BshFI	GGCC	3 cut(s)	210, 248, 492
BsiHKAI	GWGCWC	1 cut(s)	834
BsiHKCI	CYCGRG	1 cut(s)	634
BsiSI	CCGG	2 cut(s)	424, 635
BslFI	GGGAC	1 cut(s)	855
BsmFI	GGGAC	1 cut(s)	855
BsmI	GAATGC	2 cut(s)	154, 271
BsnI	GGCC	3 cut(s)	210, 248, 492
BsoBI	CYCGRG	1 cut(s)	634
Bsp1286I	GDGCHC	1 cut(s)	834
Bsp143I	GATC	1 cut(s)	31
Bsp19I	CCATGG	1 cut(s)	270
BspACI	CCGC	3 cut(s)	838, 852, 854
BspANI	GGCC	3 cut(s)	210, 248, 492
BspCNI	CTCAG	4 cut(s)	129, 411, 561, 903
BspFNI	CGCG	1 cut(s)	854
BspLI	GGNNCC	3 cut(s)	850, 883, 917
BspMAI	CTGCAG	1 cut(s)	644
BspOI	GCTAGC	1 cut(s)	695
BspPI	GGATC	1 cut(s)	39
BspQI	GCTCTTC	1 cut(s)	797
BsrDI	GCAATG	3 cut(s)	196, 231, 934
BsrI	ACTGG	2 cut(s)	33, 849
BssECI	CCNNGG	5 cut(s)	243, 270, 634, 726, 852
BssMI	GATC	1 cut(s)	31
BssT1I	CCWWGG	3 cut(s)	243, 270, 726
Bst4CI	ACNGT	1 cut(s)	565
Bst6I	CTCTTC	1 cut(s)	797
BstAPI	GCANNNNNTGC	1 cut(s)	950
BstC8I	GCNNGC	4 cut(s)	665, 681, 693, 753
BstDEI	CTNAG	4 cut(s)	137, 398, 569, 911
BstDSI	CCRYGG	2 cut(s)	270, 852
BstF5I	GGATG	2 cut(s)	580, 736
BstFNI	CGCG	1 cut(s)	854
BstKTI	GATC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	31
BstMWI	GCNNNNNNNGC	7 cut(s)	186, 245, 377, 433, 660, 701, 950
BstNSI	RCATGY	1 cut(s)	667
BstSCI	CCNGG	2 cut(s)	633, 634
BstSFI	CTRYAG	4 cut(s)	223, 372, 495, 640
BstUI	CGCG	1 cut(s)	854
BstV1I	GCAGC	4 cut(s)	160, 163, 223, 626
BsuI	GTATCC	2 cut(s)	775, 815
BsuRI	GGCC	3 cut(s)	210, 248, 492
BtgI	CCRYGG	2 cut(s)	270, 852
BtsCI	GGATG	2 cut(s)	580, 736
BtsI	GCAGTG	1 cut(s)	951
BtsIMutI	CAGTG	1 cut(s)	951
Cac8I	GCNNGC	4 cut(s)	665, 681, 693, 753
CaiI	CAGNNNCTG	1 cut(s)	380
Cfr13I	GGNCC	2 cut(s)	209, 491
Cfr42I	CCGCGG	1 cut(s)	855
Cfr9I	CCCGGG	1 cut(s)	634
CseI	GACGC	1 cut(s)	796
Csp6I	GTAC	1 cut(s)	613
CviAII	CATG	3 cut(s)	271, 616, 664
CviQI	GTAC	1 cut(s)	613
DdeI	CTNAG	4 cut(s)	137, 398, 569, 911
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
Eam1104I	CTCTTC	1 cut(s)	797
EarI	CTCTTC	1 cut(s)	797
Eco130I	CCWWGG	3 cut(s)	243, 270, 726
Eco57I	CTGAAG	1 cut(s)	225
Eco88I	CYCGRG	1 cut(s)	634
EcoO109I	RGGNCCY	2 cut(s)	209, 491
EcoT14I	CCWWGG	3 cut(s)	243, 270, 726
ErhI	CCWWGG	3 cut(s)	243, 270, 726
FaeI	CATG	3 cut(s)	274, 619, 667
FalI	AAGNNNNNCTT	2 cut(s)	36, 68
FaqI	GGGAC	1 cut(s)	855
FatI	CATG	3 cut(s)	270, 615, 663
FauI	CCCGC	1 cut(s)	831
FauNDI	CATATG	2 cut(s)	36, 451
Fnu4HI	GCNGC	4 cut(s)	149, 152, 237, 640
FokI	GGATG	2 cut(s)	587, 743
Fsp4HI	GCNGC	4 cut(s)	149, 152, 237, 640
FspBI	CTAG	4 cut(s)	359, 554, 692, 958
GluI	GCNGC	4 cut(s)	149, 152, 237, 640
HaeIII	GGCC	3 cut(s)	210, 248, 492
HapII	CCGG	2 cut(s)	424, 635
HgaI	GACGC	1 cut(s)	796
Hin1II	CATG	3 cut(s)	274, 619, 667
HindIII	AAGCTT	1 cut(s)	626
HpaII	CCGG	2 cut(s)	424, 635
HphI	GGTGA	3 cut(s)	154, 623, 886
Hpy166II	GTNNAC	1 cut(s)	457
Hpy188I	TCNGA	5 cut(s)	138, 387, 570, 812, 912
Hpy188III	TCNNGA	4 cut(s)	262, 280, 601, 799
Hpy8I	GTNNAC	1 cut(s)	457
HpyAV	CCTTC	3 cut(s)	200, 521, 591
HpyCH4III	ACNGT	1 cut(s)	565
HpyCH4V	TGCA	5 cut(s)	436, 478, 578, 642, 953
HpyF10VI	GCNNNNNNNGC	7 cut(s)	186, 245, 377, 433, 660, 701, 950
HpyF3I	CTNAG	4 cut(s)	137, 398, 569, 911
Hsp92II	CATG	3 cut(s)	274, 619, 667
KspI	CCGCGG	1 cut(s)	855
Kzo9I	GATC	1 cut(s)	31
LguI	GCTCTTC	1 cut(s)	797
LmnI	GCTCC	3 cut(s)	244, 343, 881
Lsp1109I	GCAGC	4 cut(s)	160, 163, 223, 626
LweI	GCATC	2 cut(s)	565, 666
MaeI	CTAG	4 cut(s)	359, 554, 692, 958
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MboII	GAAGA	1 cut(s)	814
MhlI	GDGCHC	1 cut(s)	834
MroXI	GAANNNNTTC	1 cut(s)	936
MseI	TTAA	1 cut(s)	309
MspA1I	CMGCKG	1 cut(s)	854
MspI	CCGG	2 cut(s)	424, 635
MspR9I	CCNGG	2 cut(s)	635, 636
Mva1269I	GAATGC	2 cut(s)	154, 271
MvnI	CGCG	1 cut(s)	854
MwoI	GCNNNNNNNGC	7 cut(s)	186, 245, 377, 433, 660, 701, 950
NciI	CCSGG	2 cut(s)	635, 636
NcoI	CCATGG	1 cut(s)	270
NdeI	CATATG	2 cut(s)	36, 451
NdeII	GATC	1 cut(s)	31
NheI	GCTAGC	1 cut(s)	691
NlaIII	CATG	3 cut(s)	274, 619, 667
NlaIV	GGNNCC	3 cut(s)	850, 883, 917
NmuCI	GTSAC	1 cut(s)	253
NspI	RCATGY	1 cut(s)	667
PaeI	GCATGC	1 cut(s)	667
PciSI	GCTCTTC	1 cut(s)	797
PctI	GAATGC	2 cut(s)	154, 271
PdmI	GAANNNNTTC	1 cut(s)	936
PkrI	GCNGC	4 cut(s)	150, 153, 238, 641
PspN4I	GGNNCC	3 cut(s)	850, 883, 917
PspPI	GGNCC	2 cut(s)	209, 491
PstI	CTGCAG	1 cut(s)	644
PstNI	CAGNNNCTG	1 cut(s)	380
RsaI	GTAC	1 cut(s)	614
RsaNI	GTAC	1 cut(s)	613
SacII	CCGCGG	1 cut(s)	855
SapI	GCTCTTC	1 cut(s)	797
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	4 cut(s)	149, 152, 237, 640
Sau3AI	GATC	1 cut(s)	31
Sau96I	GGNCC	2 cut(s)	209, 491
ScrFI	CCNGG	2 cut(s)	635, 636
SduI	GDGCHC	1 cut(s)	834
SetI	ASST	6 cut(s)	65, 352, 379, 583, 630, 917
SfaNI	GCATC	2 cut(s)	565, 666
SfcI	CTRYAG	4 cut(s)	223, 372, 495, 640
Sfr303I	CCGCGG	1 cut(s)	855
SgrBI	CCGCGG	1 cut(s)	855
SmaI	CCCGGG	1 cut(s)	636
SphI	GCATGC	1 cut(s)	667
SsiI	CCGC	3 cut(s)	838, 852, 854
SspMI	CTAG	4 cut(s)	359, 554, 692, 958
StyD4I	CCNGG	2 cut(s)	633, 634
StyI	CCWWGG	3 cut(s)	243, 270, 726
TaaI	ACNGT	1 cut(s)	565
TaqI	TCGA	3 cut(s)	301, 602, 789
TatI	WGTACW	1 cut(s)	612
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	1 cut(s)	951
TseFI	GTSAC	1 cut(s)	253
TseI	GCWGC	4 cut(s)	148, 151, 236, 639
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	3 cut(s)	533, 573, 945
TspMI	CCCGGG	1 cut(s)	634
TspRI	CASTG	1 cut(s)	951
XceI	RCATGY	1 cut(s)	667
XmaI	CCCGGG	1 cut(s)	634
XmnI	GAANNNNTTC	1 cut(s)	936
XspI	CTAG	4 cut(s)	359, 554, 692, 958

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.