Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

5340877 .. 5342891

Gene Structure 2015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G074100.1_v2.0.a1.CDS.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGAGGCCCTCCACGTAAGCCCAGCCTTTTCCCTACTTCTCCGGTCACAACGCCTCCAGTCTCACCTCCCCAATGGGCCCCAGAAGCTCAGCACCCGCCGTCCGATCAAGCCCTTCGTTTCTGCCACGCTTTCCCGACCGACCGCCAGGTTTCCGTCAAACCCTCCACCTCTTCTGCTTCCTTCAAGACCAGAACGACGCCATCTCCGCCTCCCAATCGGGTCTCGGGGGATTTGCTCCAGTACCCGCTTGGCTTCCTCGGAGTCAATTGGCCACGAAGCTGTCAGAGCAATTGGGAGTGAGAGTTTGGATGAAAAAGAGGACTTGCAGCCTGTCTTCTCATTCAAGCTTCGGGGAGCTTATAACATGATGCCAAAGCTTCCGAGGGAGCAACTGGATCGAGGGGTTATTTGCTCCTCAACTGGAAACCATGCCCAAGGAGTAGCCTTGGCTGCTAAGGAGTTGAATTGCAGTGCTGTGATTGCAATGCCTGTAACCACACCAGAAATTAAGCTTAATTTCACAATTCTAATTTGTGGGTTTGGCTTATTGAATGTTGTGGAATTTTGTATTGCTTGTTTGCAATGGAAATCTGTTGAGAGATTGGGCGCCACGGTTATTCTTATAGGGGATTCCTATGATGAGGCTCAAACTTATGCTAAGAAGCAGGCTCAAGAGGAGGGAAGGAGCTTCATACCTCCTTTTGATCACCCAGATGTTATTATCGGACAAGGAACGCTAAAAATCCAACGCACTAACTACAATTCTGCTAATAACCCTCAGCCCTTCTTGAACTTCATGAAGAATCAACAATACAAAAAGATAGATGTGCATCAAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004794 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006549 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009097 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016829 GO:0016840 GO:0016841 GO:0019752 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00290 ko01100 ko01110 ko01130 ko01200 ko01230 map00260 map00290 map01100 map01110 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP Thr_dehydrat_C

Protein Analysis

281

Amino Acids

31.11

Weight (kDa)

9.58

Isoelectric Point (pI)

55.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	363
AccB1I	GGYRCC	1 cut(s)	608
AciI	CCGC	4 cut(s)	97, 144, 208, 247
AclWI	GGATC	1 cut(s)	405
AcoI	YGGCCR	1 cut(s)	271
AcsI	RAATTY	1 cut(s)	563
AcyI	GRCGYC	2 cut(s)	199, 609
AfaI	GTAC	1 cut(s)	244
AgsI	TTSAA	5 cut(s)	186, 346, 466, 553, 793
AjnI	CCWGG	1 cut(s)	146
AluBI	AGCT	7 cut(s)	88, 281, 349, 359, 379, 514, 690
AluI	AGCT	7 cut(s)	88, 281, 349, 359, 379, 514, 690
Alw26I	GTCTC	2 cut(s)	66, 228
AlwI	GGATC	1 cut(s)	405
Ama87I	CYCGRG	1 cut(s)	225
AoxI	GGCC	3 cut(s)	6, 77, 271
ApaI	GGGCCC	1 cut(s)	81
ApeKI	GCWGC	2 cut(s)	328, 452
ApoI	RAATTY	1 cut(s)	563
AspLEI	GCGC	1 cut(s)	611
AspS9I	GGNCC	3 cut(s)	7, 77, 78
AsuHPI	GGTGA	2 cut(s)	56, 701
AvaI	CYCGRG	1 cut(s)	225
BaeGI	GKGCMC	1 cut(s)	81
BalI	TGGCCA	1 cut(s)	273
BanI	GGYRCC	1 cut(s)	608
BanII	GRGCYC	1 cut(s)	81
BbsI	GAAGAC	1 cut(s)	328
BbvCI	CCTCAGC	1 cut(s)	780
BbvI	GCAGC	2 cut(s)	340, 439
BccI	CCATC	1 cut(s)	210
BceAI	ACGGC	1 cut(s)	84
BcgI	CGANNNNNNTGC	2 cut(s)	380, 414
BciT130I	CCWGG	1 cut(s)	148
BclI	TGATCA	1 cut(s)	706
BcoDI	GTCTC	2 cut(s)	66, 228
BfoI	RGCGCY	1 cut(s)	612
BisI	GCNGC	2 cut(s)	329, 453
BlpI	GCTNAGC	1 cut(s)	89
BlsI	GCNGC	2 cut(s)	330, 454
Bme1390I	CCNGG	1 cut(s)	148
BmeT110I	CYCGRG	1 cut(s)	225
BmgT120I	GGNCC	3 cut(s)	7, 77, 78
BmiI	GGNNCC	3 cut(s)	79, 80, 610
BmrFI	CCNGG	1 cut(s)	148
BmsI	GCATC	1 cut(s)	360
BpiI	GAAGAC	1 cut(s)	328
BpmI	CTGGAG	2 cut(s)	41, 223
Bpu10I	CCTNAGC	2 cut(s)	456, 780
Bpu1102I	GCTNAGC	1 cut(s)	89
BpuEI	CTTGAG	1 cut(s)	657
BsaAI	YACGTR	1 cut(s)	16
BsaBI	GATNNNNATC	1 cut(s)	831
BsaHI	GRCGYC	2 cut(s)	199, 609
BsaI	GGTCTC	1 cut(s)	228
BsaJI	CCNNGG	5 cut(s)	258, 383, 436, 447, 612
BsaWI	WCCGGW	1 cut(s)	42
BsaXI	ACNNNNNCTCC	6 cut(s)	39, 69, 189, 219, 289, 319
Bse1I	ACTGG	4 cut(s)	58, 240, 399, 427
Bse3DI	GCAATG	2 cut(s)	492, 590
Bse8I	GATNNNNATC	1 cut(s)	831
BseBI	CCWGG	1 cut(s)	148
BseDI	CCNNGG	5 cut(s)	258, 383, 436, 447, 612
BseGI	GGATG	1 cut(s)	316
BseJI	GATNNNNATC	1 cut(s)	831
BseMI	GCAATG	2 cut(s)	492, 590
BseMII	CTCAG	2 cut(s)	103, 794
BseNI	ACTGG	4 cut(s)	58, 240, 399, 427
BseRI	GAGGAG	2 cut(s)	406, 692
BseSI	GKGCMC	1 cut(s)	81
BseXI	GCAGC	2 cut(s)	340, 439
BseYI	CCCAGC	1 cut(s)	22
Bsh1285I	CGRYCG	2 cut(s)	140, 144
BshFI	GGCC	3 cut(s)	8, 79, 273
BshNI	GGYRCC	1 cut(s)	608
BsiEI	CGRYCG	2 cut(s)	140, 144
BsiHKCI	CYCGRG	1 cut(s)	225
BsiSI	CCGG	1 cut(s)	43
BsmAI	GTCTC	2 cut(s)	66, 228
BsnI	GGCC	3 cut(s)	8, 79, 273
Bso31I	GGTCTC	1 cut(s)	228
BsoBI	CYCGRG	1 cut(s)	225
Bsp120I	GGGCCC	1 cut(s)	77
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp143I	GATC	3 cut(s)	105, 397, 706
Bsp1720I	GCTNAGC	1 cut(s)	89
BspACI	CCGC	4 cut(s)	97, 144, 208, 247
BspANI	GGCC	3 cut(s)	8, 79, 273
BspCNI	CTCAG	2 cut(s)	102, 793
BspHI	TCATGA	1 cut(s)	798
BspLI	GGNNCC	3 cut(s)	79, 80, 610
BspPI	GGATC	1 cut(s)	405
BspT107I	GGYRCC	1 cut(s)	608
BspTNI	GGTCTC	1 cut(s)	228
BsrDI	GCAATG	2 cut(s)	492, 590
BsrI	ACTGG	4 cut(s)	58, 240, 399, 427
BssECI	CCNNGG	5 cut(s)	258, 383, 436, 447, 612
BssMI	GATC	3 cut(s)	105, 397, 706
BssNI	GRCGYC	2 cut(s)	199, 609
BssT1I	CCWWGG	2 cut(s)	436, 447
Bst2UI	CCWGG	1 cut(s)	148
Bst4CI	ACNGT	1 cut(s)	616
Bst6I	CTCTTC	1 cut(s)	177
BstACI	GRCGYC	2 cut(s)	199, 609
BstBAI	YACGTR	1 cut(s)	16
BstC8I	GCNNGC	1 cut(s)	669
BstDEI	CTNAG	4 cut(s)	89, 456, 660, 780
BstDSI	CCRYGG	1 cut(s)	612
BstF5I	GGATG	1 cut(s)	316
BstH2I	RGCGCY	1 cut(s)	612
BstHHI	GCGC	1 cut(s)	611
BstKTI	GATC	3 cut(s)	108, 400, 709
BstMAI	GTCTC	2 cut(s)	66, 228
BstMBI	GATC	3 cut(s)	105, 397, 706
BstMCI	CGRYCG	2 cut(s)	140, 144
BstMWI	GCNNNNNNNGC	5 cut(s)	85, 207, 287, 452, 482
BstNI	CCWGG	1 cut(s)	148
BstSCI	CCNGG	1 cut(s)	146
BstSLI	GKGCMC	1 cut(s)	81
BstV1I	GCAGC	2 cut(s)	340, 439
BstV2I	GAAGAC	1 cut(s)	328
BsuRI	GGCC	3 cut(s)	8, 79, 273
BtgI	CCRYGG	1 cut(s)	612
BtsCI	GGATG	1 cut(s)	316
BtsI	GCAGTG	1 cut(s)	478
BtsIMutI	CAGTG	1 cut(s)	478
Cac8I	GCNNGC	1 cut(s)	669
CciI	TCATGA	1 cut(s)	798
CfoI	GCGC	1 cut(s)	611
Cfr13I	GGNCC	3 cut(s)	7, 77, 78
CseI	GACGC	1 cut(s)	207
Csp6I	GTAC	1 cut(s)	243
CviAII	CATG	3 cut(s)	367, 431, 799
CviQI	GTAC	1 cut(s)	243
DdeI	CTNAG	4 cut(s)	89, 456, 660, 780
DinI	GGCGCC	1 cut(s)	610
DpnI	GATC	3 cut(s)	107, 399, 708
DpnII	GATC	3 cut(s)	105, 397, 706
EaeI	YGGCCR	1 cut(s)	271
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
EciI	GGCGGA	1 cut(s)	197
Eco130I	CCWWGG	2 cut(s)	436, 447
Eco24I	GRGCYC	1 cut(s)	81
Eco31I	GGTCTC	1 cut(s)	228
Eco88I	CYCGRG	1 cut(s)	225
EcoO109I	RGGNCCY	2 cut(s)	7, 78
EcoRII	CCWGG	1 cut(s)	146
EcoT14I	CCWWGG	2 cut(s)	436, 447
EcoT38I	GRGCYC	1 cut(s)	81
EgeI	GGCGCC	1 cut(s)	610
EheI	GGCGCC	1 cut(s)	610
ErhI	CCWWGG	2 cut(s)	436, 447
FaeI	CATG	3 cut(s)	370, 434, 802
FaiI	YATR	8 cut(s)	363, 368, 432, 626, 639, 657, 695, 800
FatI	CATG	3 cut(s)	366, 430, 798
FauI	CCCGC	2 cut(s)	104, 254
FbaI	TGATCA	1 cut(s)	706
Fnu4HI	GCNGC	2 cut(s)	329, 453
FokI	GGATG	1 cut(s)	323
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	2 cut(s)	329, 453
GlaI	GCGC	1 cut(s)	610
GluI	GCNGC	2 cut(s)	329, 453
GsaI	CCCAGC	1 cut(s)	26
GsuI	CTGGAG	2 cut(s)	41, 223
HaeII	RGCGCY	1 cut(s)	612
HaeIII	GGCC	3 cut(s)	8, 79, 273
HapII	CCGG	1 cut(s)	43
HgaI	GACGC	1 cut(s)	207
HhaI	GCGC	1 cut(s)	611
Hin1I	GRCGYC	2 cut(s)	199, 609
Hin1II	CATG	3 cut(s)	370, 434, 802
Hin6I	GCGC	1 cut(s)	609
HinP1I	GCGC	1 cut(s)	609
HindIII	AAGCTT	3 cut(s)	347, 377, 512
HinfI	GANTC	3 cut(s)	263, 632, 805
HpaII	CCGG	1 cut(s)	43
HphI	GGTGA	2 cut(s)	56, 701
Hpy188I	TCNGA	5 cut(s)	105, 262, 287, 384, 728
Hpy188III	TCNNGA	5 cut(s)	135, 186, 674, 790, 799
Hpy99I	CGWCG	1 cut(s)	201
HpyAV	CCTTC	4 cut(s)	124, 192, 678, 796
HpyCH4III	ACNGT	1 cut(s)	616
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	5 cut(s)	328, 471, 485, 583, 832
HpyF10VI	GCNNNNNNNGC	5 cut(s)	85, 207, 287, 452, 482
HpyF3I	CTNAG	4 cut(s)	89, 456, 660, 780
HpySE526I	ACGT	1 cut(s)	15
Hsp92I	GRCGYC	2 cut(s)	199, 609
Hsp92II	CATG	3 cut(s)	370, 434, 802
HspAI	GCGC	1 cut(s)	609
KasI	GGCGCC	1 cut(s)	608
Ksp22I	TGATCA	1 cut(s)	706
Kzo9I	GATC	3 cut(s)	105, 397, 706
LmnI	GCTCC	5 cut(s)	242, 356, 388, 419, 687
Lsp1109I	GCAGC	2 cut(s)	340, 439
LweI	GCATC	1 cut(s)	360
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	2 cut(s)	45, 493
MalI	GATC	3 cut(s)	107, 399, 708
MboI	GATC	3 cut(s)	105, 397, 706
MboII	GAAGA	3 cut(s)	164, 328, 814
MfeI	CAATTG	2 cut(s)	267, 291
MhlI	GDGCHC	1 cut(s)	81
MlsI	TGGCCA	1 cut(s)	273
MluCI	AATT	9 cut(s)	267, 291, 466, 507, 517, 525, 531, 563, 763
MluNI	TGGCCA	1 cut(s)	273
Mly113I	GGCGCC	1 cut(s)	609
MlyI	GAGTC	1 cut(s)	272
MmeI	TCCRAC	1 cut(s)	772
Mox20I	TGGCCA	1 cut(s)	273
MscI	TGGCCA	1 cut(s)	273
MseI	TTAA	2 cut(s)	510, 516
MslI	CAYNNNNRTG	1 cut(s)	714
Msp20I	TGGCCA	1 cut(s)	273
MspI	CCGG	1 cut(s)	43
MspR9I	CCNGG	1 cut(s)	148
MunI	CAATTG	2 cut(s)	267, 291
MvaI	CCWGG	1 cut(s)	148
MwoI	GCNNNNNNNGC	5 cut(s)	85, 207, 287, 452, 482
NarI	GGCGCC	1 cut(s)	609
NdeII	GATC	3 cut(s)	105, 397, 706
NlaIII	CATG	3 cut(s)	370, 434, 802
NlaIV	GGNNCC	3 cut(s)	79, 80, 610
NmuCI	GTSAC	1 cut(s)	45
PagI	TCATGA	1 cut(s)	798
PfeI	GAWTC	2 cut(s)	632, 805
PkrI	GCNGC	2 cut(s)	330, 454
PleI	GAGTC	1 cut(s)	271
PluTI	GGCGCC	1 cut(s)	612
PpsI	GAGTC	1 cut(s)	271
Ppu21I	YACGTR	1 cut(s)	16
PsiI	TTATAA	1 cut(s)	363
Psp6I	CCWGG	1 cut(s)	146
PspFI	CCCAGC	1 cut(s)	22
PspGI	CCWGG	1 cut(s)	146
PspN4I	GGNNCC	3 cut(s)	79, 80, 610
PspOMI	GGGCCC	1 cut(s)	77
PspPI	GGNCC	3 cut(s)	7, 77, 78
RsaI	GTAC	1 cut(s)	244
RsaNI	GTAC	1 cut(s)	243
RseI	CAYNNNNRTG	1 cut(s)	714
SaqAI	TTAA	2 cut(s)	510, 516
SatI	GCNGC	2 cut(s)	329, 453
Sau3AI	GATC	3 cut(s)	105, 397, 706
Sau96I	GGNCC	3 cut(s)	7, 77, 78
SchI	GAGTC	1 cut(s)	272
ScrFI	CCNGG	1 cut(s)	148
SduI	GDGCHC	1 cut(s)	81
SfaNI	GCATC	1 cut(s)	360
SfoI	GGCGCC	1 cut(s)	610
SmiMI	CAYNNNNRTG	1 cut(s)	714
SmlI	CTYRAG	1 cut(s)	672
SmoI	CTYRAG	1 cut(s)	672
Sse9I	AATT	9 cut(s)	267, 291, 466, 507, 517, 525, 531, 563, 763
SsiI	CCGC	4 cut(s)	97, 144, 208, 247
SspDI	GGCGCC	1 cut(s)	608
StyD4I	CCNGG	1 cut(s)	146
StyI	CCWWGG	2 cut(s)	436, 447
TaaI	ACNGT	1 cut(s)	616
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	1 cut(s)	400
TaqII	GACCGA	1 cut(s)	154
TasI	AATT	9 cut(s)	267, 291, 466, 507, 517, 525, 531, 563, 763
TfiI	GAWTC	2 cut(s)	632, 805
Tru1I	TTAA	2 cut(s)	510, 516
Tru9I	TTAA	2 cut(s)	510, 516
TscAI	CASTG	1 cut(s)	478
TseFI	GTSAC	1 cut(s)	45
TseI	GCWGC	2 cut(s)	328, 452
Tsp45I	GTSAC	1 cut(s)	45
TspDTI	ATGAA	4 cut(s)	327, 682, 787, 815
TspGWI	ACGGA	1 cut(s)	144
TspRI	CASTG	1 cut(s)	478
XapI	RAATTY	1 cut(s)	563
XcmI	CCANNNNNNNNNTGG	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.