Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

5580457 .. 5582403

Gene Structure 1947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G075800.1_v2.0.a1.CDS.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGGCTCATCAGAAACCCCTCTTAAGCTTCCCATCACAGATTATTCCAAGCAAGCCCTCACTCCAGGCTCCAAAGAATGGGAAACAGTGAGAACCCAAGTCCACAATGCACCCGAAGAGTATGGTTGTTTCGAGGCTTTGTTTTACAAAGTCCCTCCACACAACAAAGCCCCTCCACACATTCGAAAGTCCATATTTCAATCAATGGAAGAACCATACAACCTCCCTTTACAAACCAAATTGCAGAATGTTAGCATGGGGGTTGATGATGTCAACATCTATGAACAAGTTCAACGCTTGATAAACACCTTGTGGCCTCAAGAAAACCCAAGCTTCTGCAAAACTATACAATCCTTCTCAGAGCAAGTTTCGGAGTTGGATCAGATCATCAGGAGGATGATTCTAGAGAGCTTGGGGCTTGAAAAGTACTTCGAGGAACACCTAGAATTGACCAACTACCTTCTACGAATGATCAAATATAAGGGGCCTCAAACCAACGAGACTAAGTTAAGACTACCCGCTCACACAAATAAGAACATTGTCACCATTTTGTACCAAAACCAAGTTGATGGGTTAGAAGTACAAACTAAAGATGGCAAATGGATCTATGCGAATCCTTCATCGGACTCTTTCATCACCATGATCGATCTACTCTACCGCAAATTTGTGCCCGACGAAATACATTGGTCGCGCAAATGTTTGCGCGACGAAATATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006790 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016143 GO:0016144 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044272 GO:0044281 GO:0044283 GO:0044550 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

240

Amino Acids

28.0

Weight (kDa)

5.91

Isoelectric Point (pI)

52.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	78
AccBSI	CCGCTC	1 cut(s)	521
AccII	CGCG	2 cut(s)	691, 705
AciI	CCGC	2 cut(s)	519, 658
AclWI	GGATC	2 cut(s)	387, 611
AcsI	RAATTY	1 cut(s)	662
AdeI	CACNNNGTG	1 cut(s)	312
AfaI	GTAC	3 cut(s)	428, 554, 582
AfiI	CCNNNNNNNGG	1 cut(s)	78
AflII	CTTAAG	1 cut(s)	23
AgsI	TTSAA	3 cut(s)	200, 293, 422
AjnI	CCWGG	1 cut(s)	64
AluBI	AGCT	3 cut(s)	28, 333, 411
AluI	AGCT	3 cut(s)	28, 333, 411
Alw26I	GTCTC	1 cut(s)	494
AlwI	GGATC	2 cut(s)	387, 611
AoxI	GGCC	2 cut(s)	314, 485
ApoI	RAATTY	1 cut(s)	662
Asp700I	GAANNNNTTC	1 cut(s)	288
AspLEI	GCGC	2 cut(s)	693, 705
AspS9I	GGNCC	1 cut(s)	485
AsuHPI	GGTGA	2 cut(s)	535, 628
AsuII	TTCGAA	1 cut(s)	184
BaeGI	GKGCMC	1 cut(s)	672
BanII	GRGCYC	1 cut(s)	8
BccI	CCATC	3 cut(s)	41, 563, 587
BciT130I	CCWGG	1 cut(s)	66
BclI	TGATCA	1 cut(s)	471
BcoDI	GTCTC	1 cut(s)	494
BfaI	CTAG	2 cut(s)	404, 443
BfrI	CTTAAG	1 cut(s)	23
BmcAI	AGTACT	1 cut(s)	428
Bme1390I	CCNGG	1 cut(s)	66
BmgT120I	GGNCC	1 cut(s)	485
BmiI	GGNNCC	2 cut(s)	70, 486
BmrFI	CCNGG	1 cut(s)	66
BpmI	CTGGAG	1 cut(s)	48
Bpu14I	TTCGAA	1 cut(s)	184
BpuEI	CTTGAG	1 cut(s)	303
Bsa29I	ATCGAT	1 cut(s)	645
Bsc4I	CCNNNNNNNGG	1 cut(s)	78
BseBI	CCWGG	1 cut(s)	66
BseCI	ATCGAT	1 cut(s)	645
BseGI	GGATG	1 cut(s)	402
BseLI	CCNNNNNNNGG	1 cut(s)	78
BseMII	CTCAG	1 cut(s)	372
BseSI	GKGCMC	1 cut(s)	672
Bsh1236I	CGCG	2 cut(s)	691, 705
BshFI	GGCC	2 cut(s)	316, 487
BshVI	ATCGAT	1 cut(s)	645
BslFI	GGGAC	1 cut(s)	137
BslI	CCNNNNNNNGG	1 cut(s)	78
BsmAI	GTCTC	1 cut(s)	494
BsmFI	GGGAC	1 cut(s)	137
BsnI	GGCC	2 cut(s)	316, 487
Bsp119I	TTCGAA	1 cut(s)	184
Bsp1286I	GDGCHC	2 cut(s)	8, 672
Bsp143I	GATC	6 cut(s)	379, 384, 471, 603, 642, 646
BspACI	CCGC	2 cut(s)	519, 658
BspANI	GGCC	2 cut(s)	316, 487
BspCNI	CTCAG	1 cut(s)	371
BspDI	ATCGAT	1 cut(s)	645
BspFNI	CGCG	2 cut(s)	691, 705
BspLI	GGNNCC	2 cut(s)	70, 486
BspPI	GGATC	2 cut(s)	387, 611
BspT104I	TTCGAA	1 cut(s)	184
BspTI	CTTAAG	1 cut(s)	23
BsrBI	CCGCTC	1 cut(s)	521
BssMI	GATC	6 cut(s)	379, 384, 471, 603, 642, 646
Bst2UI	CCWGG	1 cut(s)	66
Bst4CI	ACNGT	1 cut(s)	88
Bst6I	CTCTTC	1 cut(s)	111
BstAFI	CTTAAG	1 cut(s)	23
BstBI	TTCGAA	1 cut(s)	184
BstC8I	GCNNGC	1 cut(s)	54
BstDEI	CTNAG	2 cut(s)	358, 504
BstF5I	GGATG	1 cut(s)	402
BstFNI	CGCG	2 cut(s)	691, 705
BstHHI	GCGC	2 cut(s)	693, 705
BstKTI	GATC	6 cut(s)	382, 387, 474, 606, 645, 649
BstMAI	GTCTC	1 cut(s)	494
BstMBI	GATC	6 cut(s)	379, 384, 471, 603, 642, 646
BstNI	CCWGG	1 cut(s)	66
BstSCI	CCNGG	1 cut(s)	64
BstSLI	GKGCMC	1 cut(s)	672
BstUI	CGCG	2 cut(s)	691, 705
BstX2I	RGATCY	1 cut(s)	603
BstXI	CCANNNNNNTGG	1 cut(s)	569
BstYI	RGATCY	1 cut(s)	603
Bsu15I	ATCGAT	1 cut(s)	645
BsuRI	GGCC	2 cut(s)	316, 487
BsuTUI	ATCGAT	1 cut(s)	645
BtsCI	GGATG	1 cut(s)	402
BtsIMutI	CAGTG	1 cut(s)	93
Cac8I	GCNNGC	1 cut(s)	54
CfoI	GCGC	2 cut(s)	693, 705
Cfr13I	GGNCC	1 cut(s)	485
ClaI	ATCGAT	1 cut(s)	645
Csp6I	GTAC	3 cut(s)	427, 553, 581
CviAII	CATG	2 cut(s)	256, 640
CviQI	GTAC	3 cut(s)	427, 553, 581
DdeI	CTNAG	2 cut(s)	358, 504
DpnI	GATC	6 cut(s)	381, 386, 473, 605, 644, 648
DpnII	GATC	6 cut(s)	379, 384, 471, 603, 642, 646
DraIII	CACNNNGTG	1 cut(s)	312
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
Eco24I	GRGCYC	1 cut(s)	8
EcoO109I	RGGNCCY	1 cut(s)	485
EcoRII	CCWGG	1 cut(s)	64
EcoT38I	GRGCYC	1 cut(s)	8
FaeI	CATG	2 cut(s)	259, 643
FaqI	GGGAC	1 cut(s)	137
FatI	CATG	2 cut(s)	255, 639
FauI	CCCGC	1 cut(s)	526
FbaI	TGATCA	1 cut(s)	471
FokI	GGATG	1 cut(s)	409
FriOI	GRGCYC	1 cut(s)	8
FspBI	CTAG	2 cut(s)	404, 443
GlaI	GCGC	2 cut(s)	692, 704
GsuI	CTGGAG	1 cut(s)	48
HaeIII	GGCC	2 cut(s)	316, 487
HhaI	GCGC	2 cut(s)	693, 705
Hin1II	CATG	2 cut(s)	259, 643
Hin6I	GCGC	2 cut(s)	691, 703
HinP1I	GCGC	2 cut(s)	691, 703
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HindIII	AAGCTT	2 cut(s)	26, 331
HinfI	GANTC	3 cut(s)	400, 613, 626
HphI	GGTGA	2 cut(s)	535, 628
Hpy166II	GTNNAC	2 cut(s)	103, 274
Hpy188I	TCNGA	5 cut(s)	13, 361, 373, 384, 625
Hpy188III	TCNNGA	3 cut(s)	320, 391, 404
Hpy8I	GTNNAC	2 cut(s)	103, 274
Hpy99I	CGWCG	2 cut(s)	677, 710
HpyAV	CCTTC	3 cut(s)	364, 470, 627
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4V	TGCA	3 cut(s)	110, 244, 339
HpyF3I	CTNAG	2 cut(s)	358, 504
Hsp92II	CATG	2 cut(s)	259, 643
HspAI	GCGC	2 cut(s)	691, 703
Ksp22I	TGATCA	1 cut(s)	471
Kzo9I	GATC	6 cut(s)	379, 384, 471, 603, 642, 646
LmnI	GCTCC	1 cut(s)	74
LpnPI	CCDG	3 cut(s)	51, 78, 376
MaeI	CTAG	2 cut(s)	404, 443
MaeIII	GTNAC	1 cut(s)	541
MalI	GATC	6 cut(s)	381, 386, 473, 605, 644, 648
MbiI	CCGCTC	1 cut(s)	521
MboI	GATC	6 cut(s)	379, 384, 471, 603, 642, 646
MboII	GAAGA	2 cut(s)	128, 221
MflI	RGATCY	1 cut(s)	603
MhlI	GDGCHC	2 cut(s)	8, 672
MluCI	AATT	3 cut(s)	239, 446, 662
MlyI	GAGTC	1 cut(s)	620
MmeI	TCCRAC	1 cut(s)	357
MroXI	GAANNNNTTC	1 cut(s)	288
MseI	TTAA	2 cut(s)	24, 509
MslI	CAYNNNNRTG	1 cut(s)	638
MspCI	CTTAAG	1 cut(s)	23
MspR9I	CCNGG	1 cut(s)	66
MvaI	CCWGG	1 cut(s)	66
MvnI	CGCG	2 cut(s)	691, 705
NdeII	GATC	6 cut(s)	379, 384, 471, 603, 642, 646
NlaIII	CATG	2 cut(s)	259, 643
NlaIV	GGNNCC	2 cut(s)	70, 486
NmuCI	GTSAC	1 cut(s)	541
NspV	TTCGAA	1 cut(s)	184
PdmI	GAANNNNTTC	1 cut(s)	288
PfeI	GAWTC	2 cut(s)	400, 613
PflMI	CCANNNNNTGG	1 cut(s)	78
PleI	GAGTC	1 cut(s)	620
PpsI	GAGTC	1 cut(s)	620
Psp6I	CCWGG	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	64
PspN4I	GGNNCC	2 cut(s)	70, 486
PspPI	GGNCC	1 cut(s)	485
PsuI	RGATCY	1 cut(s)	603
RsaI	GTAC	3 cut(s)	428, 554, 582
RsaNI	GTAC	3 cut(s)	427, 553, 581
RseI	CAYNNNNRTG	1 cut(s)	638
SaqAI	TTAA	2 cut(s)	24, 509
Sau3AI	GATC	6 cut(s)	379, 384, 471, 603, 642, 646
Sau96I	GGNCC	1 cut(s)	485
ScaI	AGTACT	1 cut(s)	428
SchI	GAGTC	1 cut(s)	620
ScrFI	CCNGG	1 cut(s)	66
SduI	GDGCHC	2 cut(s)	8, 672
SetI	ASST	7 cut(s)	30, 225, 311, 335, 413, 444, 462
SfuI	TTCGAA	1 cut(s)	184
SmiMI	CAYNNNNRTG	1 cut(s)	638
SmlI	CTYRAG	2 cut(s)	23, 318
SmoI	CTYRAG	2 cut(s)	23, 318
Sse9I	AATT	3 cut(s)	239, 446, 662
SsiI	CCGC	2 cut(s)	519, 658
SspMI	CTAG	2 cut(s)	404, 443
StyD4I	CCNGG	1 cut(s)	64
TaaI	ACNGT	1 cut(s)	88
TaqI	TCGA	4 cut(s)	132, 184, 432, 645
TasI	AATT	3 cut(s)	239, 446, 662
TatI	WGTACW	2 cut(s)	426, 580
TfiI	GAWTC	2 cut(s)	400, 613
Tru1I	TTAA	2 cut(s)	24, 509
Tru9I	TTAA	2 cut(s)	24, 509
TscAI	CASTG	1 cut(s)	93
TseFI	GTSAC	1 cut(s)	541
Tsp45I	GTSAC	1 cut(s)	541
TspDTI	ATGAA	3 cut(s)	297, 609, 622
TspRI	CASTG	1 cut(s)	93
Van91I	CCANNNNNTGG	1 cut(s)	78
Vha464I	CTTAAG	1 cut(s)	23
XapI	RAATTY	1 cut(s)	662
XbaI	TCTAGA	1 cut(s)	403
XmnI	GAANNNNTTC	1 cut(s)	288
XspI	CTAG	2 cut(s)	404, 443
ZrmI	AGTACT	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.