Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

5582972 .. 5584565

Gene Structure 1594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G075900.1_v2.0.a1.CDS.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGGCTCAGAAACCCCTCTCAGACTTCCCGTCATAGATTTCTCCAACCAAAGCCTAACTCCAGGCACCAGAGAGTGGAACACAGTGAGAGCCCAGGTCCACAATGCCCTTGAAGAGTATGGTTGCTTCGAGGCATTGTTCACCAAAGTCCCTTCACACATTCGAAAGTCCATATTTCAATCAATTGAAGATCTTCTCGACCTCCCTTTGCAAACCAAATTAAAAAATGTTTCGAGAAAACCTTACCGTGGCTATGCCGGGCAGTTACCCATGATGCCACTATATGAGAGCATGGGGATTGATGGTGCCAACGTCTATGAACAAGTTCAAAGCTTGGCAAACACCTTGTGGCCTCAAGGAAACCCAAGCTTCTGCAAAACTATACAATCCTTCACGGAGAAAGTTTCAGAATTGGATCAGATCATCAGGAGGATGATTCTGGAGAGCTTGGGCCTTAAGGAGTACTTGGAGGAACACCTAAACTCGACCGACTACCTTCTTCGAGTGATGAAATATAAGGCGCCTCAAACCAACGAGACTAAGTTAGGGTTACCCCCTCACACAGACAAGAACATTGTCACCATTTTGTACCAAAACCAAGTCGATGGGTTAGAAGTGCAAACCAAAGATGGCAAATGGATCAATGTCAAGCCCTCATCAGACTCTTTCATCGCCTTGATCGGGGAGTCACTCCACGCATGGACAAATGGTAGGCTGCATTCTCCCATTCATAGGGTTATGATGAATGGAAATGAGATTAGGTACTCAACTGGATTGTTCTCCGCCCCTAAGGAAGGCTACATAATAAAAGCCCCAAACGAGGTTGTGGATGAAGAGCACCCTTTGCTTTTTAAGCCCTATGAACATGCTCAATTTATTGCGTTCTGTAATTCAGAGGCCGGCCAGAGAGGTCCCTTTTCTTTGAAGACTTTCTGTGGTGTCCAAGACTTGACCTTGTCTACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006790 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016143 GO:0016144 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044272 GO:0044281 GO:0044283 GO:0044550 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

322

Amino Acids

36.38

Weight (kDa)

6.16

Isoelectric Point (pI)

35.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	65, 305, 520
AccB7I	CCANNNNNTGG	1 cut(s)	75
AccI	GTMKAC	1 cut(s)	959
AciI	CCGC	1 cut(s)	783
AclWI	GGATC	2 cut(s)	423, 647
AcoI	YGGCCR	1 cut(s)	901
AcyI	GRCGYC	1 cut(s)	521
AdeI	CACNNNGTG	1 cut(s)	348
AfaI	GTAC	3 cut(s)	464, 590, 764
AfiI	CCNNNNNNNGG	6 cut(s)	75, 248, 681, 732, 794, 820
AflII	CTTAAG	1 cut(s)	455
AgsI	TTSAA	5 cut(s)	113, 179, 188, 329, 925
AhdI	GACNNNNNGTC	1 cut(s)	29
AjnI	CCWGG	2 cut(s)	61, 93
AluBI	AGCT	3 cut(s)	333, 369, 447
AluI	AGCT	3 cut(s)	333, 369, 447
Alw21I	GWGCWC	1 cut(s)	840
Alw26I	GTCTC	1 cut(s)	530
AlwI	GGATC	2 cut(s)	423, 647
AoxI	GGCC	4 cut(s)	350, 451, 897, 901
ApeKI	GCWGC	1 cut(s)	715
Asp700I	GAANNNNTTC	3 cut(s)	192, 324, 929
AspLEI	GCGC	1 cut(s)	523
AspS9I	GGNCC	3 cut(s)	97, 451, 911
AsuC2I	CCSGG	1 cut(s)	259
AsuHPI	GGTGA	2 cut(s)	133, 571
AsuII	TTCGAA	1 cut(s)	163
AvaII	GGWCC	2 cut(s)	97, 911
AxyI	CCTNAGG	1 cut(s)	789
BanI	GGYRCC	3 cut(s)	65, 305, 520
BanII	GRGCYC	2 cut(s)	8, 94
BarI	GAAGNNNNNNTAC	2 cut(s)	110, 142
BbsI	GAAGAC	1 cut(s)	932
Bbv12I	GWGCWC	1 cut(s)	840
BbvI	GCAGC	1 cut(s)	702
BccI	CCATC	3 cut(s)	296, 599, 623
BciT130I	CCWGG	2 cut(s)	63, 95
BcnI	CCSGG	1 cut(s)	259
BcoDI	GTCTC	1 cut(s)	530
BfoI	RGCGCY	1 cut(s)	524
BfrI	CTTAAG	1 cut(s)	455
BglII	AGATCT	1 cut(s)	190
BisI	GCNGC	1 cut(s)	716
BlsI	GCNGC	1 cut(s)	717
BmcAI	AGTACT	1 cut(s)	464
Bme1390I	CCNGG	3 cut(s)	63, 95, 259
Bme18I	GGWCC	2 cut(s)	97, 911
BmeRI	GACNNNNNGTC	1 cut(s)	29
BmgT120I	GGNCC	3 cut(s)	97, 451, 911
BmiI	GGNNCC	4 cut(s)	67, 307, 522, 913
BmrFI	CCNGG	3 cut(s)	63, 95, 259
BmsI	GCATC	1 cut(s)	264
BpiI	GAAGAC	1 cut(s)	932
BpmI	CTGGAG	2 cut(s)	45, 461
Bpu14I	TTCGAA	1 cut(s)	163
BpuEI	CTTGAG	1 cut(s)	339
BpuMI	CCSGG	1 cut(s)	259
BsaHI	GRCGYC	1 cut(s)	521
BsaJI	CCNNGG	2 cut(s)	93, 247
Bsc4I	CCNNNNNNNGG	6 cut(s)	75, 248, 681, 732, 794, 820
Bse118I	RCCGGY	1 cut(s)	899
Bse1I	ACTGG	1 cut(s)	775
Bse21I	CCTNAGG	1 cut(s)	789
BseBI	CCWGG	2 cut(s)	63, 95
BseDI	CCNNGG	2 cut(s)	93, 247
BseGI	GGATG	2 cut(s)	438, 835
BseLI	CCNNNNNNNGG	6 cut(s)	75, 248, 681, 732, 794, 820
BseMII	CTCAG	2 cut(s)	21, 34
BseNI	ACTGG	1 cut(s)	775
BseXI	GCAGC	1 cut(s)	702
Bsh1285I	CGRYCG	1 cut(s)	489
BshFI	GGCC	4 cut(s)	352, 453, 899, 903
BshNI	GGYRCC	3 cut(s)	65, 305, 520
BsiEI	CGRYCG	1 cut(s)	489
BsiHKAI	GWGCWC	1 cut(s)	840
BsiSI	CCGG	2 cut(s)	258, 900
BslFI	GGGAC	2 cut(s)	134, 897
BslI	CCNNNNNNNGG	6 cut(s)	75, 248, 681, 732, 794, 820
BsmAI	GTCTC	1 cut(s)	530
BsmFI	GGGAC	2 cut(s)	134, 897
BsmI	GAATGC	1 cut(s)	718
BsnI	GGCC	4 cut(s)	352, 453, 899, 903
Bsp119I	TTCGAA	1 cut(s)	163
Bsp1286I	GDGCHC	3 cut(s)	8, 94, 840
Bsp143I	GATC	5 cut(s)	190, 415, 420, 639, 678
BspACI	CCGC	1 cut(s)	783
BspANI	GGCC	4 cut(s)	352, 453, 899, 903
BspCNI	CTCAG	2 cut(s)	20, 33
BspLI	GGNNCC	4 cut(s)	67, 307, 522, 913
BspPI	GGATC	2 cut(s)	423, 647
BspQI	GCTCTTC	1 cut(s)	828
BspT104I	TTCGAA	1 cut(s)	163
BspT107I	GGYRCC	3 cut(s)	65, 305, 520
BspTI	CTTAAG	1 cut(s)	455
BsrFI	RCCGGY	1 cut(s)	899
BsrI	ACTGG	1 cut(s)	775
BssAI	RCCGGY	1 cut(s)	899
BssECI	CCNNGG	2 cut(s)	93, 247
BssMI	GATC	5 cut(s)	190, 415, 420, 639, 678
BssNI	GRCGYC	1 cut(s)	521
Bst2UI	CCWGG	2 cut(s)	63, 95
Bst4CI	ACNGT	2 cut(s)	85, 248
Bst6I	CTCTTC	2 cut(s)	108, 828
BstACI	GRCGYC	1 cut(s)	521
BstAFI	CTTAAG	1 cut(s)	455
BstAPI	GCANNNNNTGC	1 cut(s)	844
BstBI	TTCGAA	1 cut(s)	163
BstC8I	GCNNGC	1 cut(s)	901
BstDEI	CTNAG	5 cut(s)	7, 20, 540, 789, 963
BstDSI	CCRYGG	1 cut(s)	247
BstEII	GGTNACC	1 cut(s)	549
BstENI	CCTNNNNNAGG	1 cut(s)	792
BstF5I	GGATG	2 cut(s)	438, 835
BstH2I	RGCGCY	1 cut(s)	524
BstHHI	GCGC	1 cut(s)	523
BstKTI	GATC	5 cut(s)	193, 418, 423, 642, 681
BstMAI	GTCTC	1 cut(s)	530
BstMBI	GATC	5 cut(s)	190, 415, 420, 639, 678
BstMCI	CGRYCG	1 cut(s)	489
BstMWI	GCNNNNNNNGC	2 cut(s)	844, 853
BstNI	CCWGG	2 cut(s)	63, 95
BstNSI	RCATGY	1 cut(s)	869
BstPI	GGTNACC	1 cut(s)	549
BstSCI	CCNGG	3 cut(s)	61, 93, 257
BstV1I	GCAGC	1 cut(s)	702
BstV2I	GAAGAC	1 cut(s)	932
BstX2I	RGATCY	1 cut(s)	190
BstXI	CCANNNNNNTGG	1 cut(s)	605
BstYI	RGATCY	1 cut(s)	190
Bsu36I	CCTNAGG	1 cut(s)	789
BsuRI	GGCC	4 cut(s)	352, 453, 899, 903
BtgI	CCRYGG	1 cut(s)	247
BtgZI	GCGATG	1 cut(s)	655
BtsCI	GGATG	2 cut(s)	438, 835
BtsIMutI	CAGTG	1 cut(s)	90
Cac8I	GCNNGC	1 cut(s)	901
CfoI	GCGC	1 cut(s)	523
Cfr10I	RCCGGY	1 cut(s)	899
Cfr13I	GGNCC	3 cut(s)	97, 451, 911
Csp6I	GTAC	3 cut(s)	463, 589, 763
CviAII	CATG	4 cut(s)	271, 292, 699, 866
CviQI	GTAC	3 cut(s)	463, 589, 763
DdeI	CTNAG	5 cut(s)	7, 20, 540, 789, 963
DinI	GGCGCC	1 cut(s)	522
DpnI	GATC	5 cut(s)	192, 417, 422, 641, 680
DpnII	GATC	5 cut(s)	190, 415, 420, 639, 678
DraIII	CACNNNGTG	1 cut(s)	348
DriI	GACNNNNNGTC	1 cut(s)	29
EaeI	YGGCCR	1 cut(s)	901
Eam1104I	CTCTTC	2 cut(s)	108, 828
Eam1105I	GACNNNNNGTC	1 cut(s)	29
EarI	CTCTTC	2 cut(s)	108, 828
EciI	GGCGGA	1 cut(s)	772
Eco24I	GRGCYC	2 cut(s)	8, 94
Eco47I	GGWCC	2 cut(s)	97, 911
Eco81I	CCTNAGG	1 cut(s)	789
Eco91I	GGTNACC	1 cut(s)	549
EcoNI	CCTNNNNNAGG	1 cut(s)	792
EcoO109I	RGGNCCY	1 cut(s)	911
EcoO65I	GGTNACC	1 cut(s)	549
EcoRII	CCWGG	2 cut(s)	61, 93
EcoT38I	GRGCYC	2 cut(s)	8, 94
EgeI	GGCGCC	1 cut(s)	522
EheI	GGCGCC	1 cut(s)	522
FaeI	CATG	4 cut(s)	274, 295, 702, 869
FalI	AAGNNNNNCTT	2 cut(s)	449, 481
FaqI	GGGAC	2 cut(s)	134, 897
FatI	CATG	4 cut(s)	270, 291, 698, 865
FblI	GTMKAC	1 cut(s)	959
Fnu4HI	GCNGC	1 cut(s)	716
FokI	GGATG	2 cut(s)	445, 842
FriOI	GRGCYC	2 cut(s)	8, 94
FseI	GGCCGGCC	1 cut(s)	903
Fsp4HI	GCNGC	1 cut(s)	716
GlaI	GCGC	1 cut(s)	522
GluI	GCNGC	1 cut(s)	716
GsuI	CTGGAG	2 cut(s)	45, 461
HaeII	RGCGCY	1 cut(s)	524
HaeIII	GGCC	4 cut(s)	352, 453, 899, 903
HapII	CCGG	2 cut(s)	258, 900
HhaI	GCGC	1 cut(s)	523
Hin1I	GRCGYC	1 cut(s)	521
Hin1II	CATG	4 cut(s)	274, 295, 702, 869
Hin6I	GCGC	1 cut(s)	521
HinP1I	GCGC	1 cut(s)	521
HindIII	AAGCTT	2 cut(s)	331, 367
HinfI	GANTC	3 cut(s)	436, 662, 686
HpaII	CCGG	2 cut(s)	258, 900
HphI	GGTGA	2 cut(s)	133, 571
Hpy166II	GTNNAC	3 cut(s)	100, 141, 960
Hpy188I	TCNGA	6 cut(s)	10, 23, 409, 420, 661, 895
Hpy188III	TCNNGA	4 cut(s)	197, 234, 427, 440
Hpy8I	GTNNAC	3 cut(s)	100, 141, 960
HpyAV	CCTTC	4 cut(s)	162, 400, 506, 788
HpyCH4III	ACNGT	2 cut(s)	85, 248
HpyCH4IV	ACGT	1 cut(s)	312
HpyCH4V	TGCA	4 cut(s)	211, 375, 619, 718
HpyF10VI	GCNNNNNNNGC	2 cut(s)	844, 853
HpyF3I	CTNAG	5 cut(s)	7, 20, 540, 789, 963
HpySE526I	ACGT	1 cut(s)	312
Hsp92I	GRCGYC	1 cut(s)	521
Hsp92II	CATG	4 cut(s)	274, 295, 702, 869
HspAI	GCGC	1 cut(s)	521
KasI	GGCGCC	1 cut(s)	520
KroI	GCCGGC	1 cut(s)	899
KroNI	GCCGGC	1 cut(s)	901
Kzo9I	GATC	5 cut(s)	190, 415, 420, 639, 678
LguI	GCTCTTC	1 cut(s)	828
Lsp1109I	GCAGC	1 cut(s)	702
LweI	GCATC	1 cut(s)	264
MaeII	ACGT	1 cut(s)	312
MaeIII	GTNAC	4 cut(s)	264, 549, 577, 687
MalI	GATC	5 cut(s)	192, 417, 422, 641, 680
MboI	GATC	5 cut(s)	190, 415, 420, 639, 678
MboII	GAAGA	6 cut(s)	125, 185, 200, 491, 845, 937
MfeI	CAATTG	1 cut(s)	183
MflI	RGATCY	1 cut(s)	190
MhlI	GDGCHC	3 cut(s)	8, 94, 840
MluCI	AATT	5 cut(s)	183, 218, 410, 872, 889
Mly113I	GGCGCC	1 cut(s)	521
MlyI	GAGTC	2 cut(s)	656, 695
MmeI	TCCRAC	1 cut(s)	69
MroNI	GCCGGC	1 cut(s)	899
MroXI	GAANNNNTTC	3 cut(s)	192, 324, 929
MseI	TTAA	3 cut(s)	221, 456, 852
MspCI	CTTAAG	1 cut(s)	455
MspI	CCGG	2 cut(s)	258, 900
MspR9I	CCNGG	3 cut(s)	63, 95, 259
MunI	CAATTG	1 cut(s)	183
Mva1269I	GAATGC	1 cut(s)	718
MvaI	CCWGG	2 cut(s)	63, 95
MwoI	GCNNNNNNNGC	2 cut(s)	844, 853
NaeI	GCCGGC	1 cut(s)	901
NarI	GGCGCC	1 cut(s)	521
NciI	CCSGG	1 cut(s)	259
NdeII	GATC	5 cut(s)	190, 415, 420, 639, 678
NgoMIV	GCCGGC	1 cut(s)	899
NlaIII	CATG	4 cut(s)	274, 295, 702, 869
NlaIV	GGNNCC	4 cut(s)	67, 307, 522, 913
NmuCI	GTSAC	2 cut(s)	577, 687
NspI	RCATGY	1 cut(s)	869
NspV	TTCGAA	1 cut(s)	163
PciSI	GCTCTTC	1 cut(s)	828
PctI	GAATGC	1 cut(s)	718
PdiI	GCCGGC	1 cut(s)	901
PdmI	GAANNNNTTC	3 cut(s)	192, 324, 929
PfeI	GAWTC	1 cut(s)	436
PflFI	GACNNNGTC	1 cut(s)	955
PflMI	CCANNNNNTGG	1 cut(s)	75
PkrI	GCNGC	1 cut(s)	717
PleI	GAGTC	2 cut(s)	656, 694
PluTI	GGCGCC	1 cut(s)	524
PpsI	GAGTC	2 cut(s)	656, 694
PpuMI	RGGWCCY	1 cut(s)	911
Psp5II	RGGWCCY	1 cut(s)	911
Psp6I	CCWGG	2 cut(s)	61, 93
PspEI	GGTNACC	1 cut(s)	549
PspGI	CCWGG	2 cut(s)	61, 93
PspN4I	GGNNCC	4 cut(s)	67, 307, 522, 913
PspPI	GGNCC	3 cut(s)	97, 451, 911
PspPPI	RGGWCCY	1 cut(s)	911
PsuI	RGATCY	1 cut(s)	190
PsyI	GACNNNGTC	1 cut(s)	955
RigI	GGCCGGCC	1 cut(s)	903
RsaI	GTAC	3 cut(s)	464, 590, 764
RsaNI	GTAC	3 cut(s)	463, 589, 763
SapI	GCTCTTC	1 cut(s)	828
SaqAI	TTAA	3 cut(s)	221, 456, 852
SatI	GCNGC	1 cut(s)	716
Sau3AI	GATC	5 cut(s)	190, 415, 420, 639, 678
Sau96I	GGNCC	3 cut(s)	97, 451, 911
ScaI	AGTACT	1 cut(s)	464
SchI	GAGTC	2 cut(s)	656, 695
ScrFI	CCNGG	3 cut(s)	63, 95, 259
SduI	GDGCHC	3 cut(s)	8, 94, 840
SfaNI	GCATC	1 cut(s)	264
SfoI	GGCGCC	1 cut(s)	522
SfuI	TTCGAA	1 cut(s)	163
SinI	GGWCC	2 cut(s)	97, 911
SmlI	CTYRAG	2 cut(s)	354, 455
SmoI	CTYRAG	2 cut(s)	354, 455
Sse9I	AATT	5 cut(s)	183, 218, 410, 872, 889
SsiI	CCGC	1 cut(s)	783
SspDI	GGCGCC	1 cut(s)	520
StyD4I	CCNGG	3 cut(s)	61, 93, 257
TaaI	ACNGT	2 cut(s)	85, 248
TaiI	ACGT	1 cut(s)	315
TaqI	TCGA	7 cut(s)	129, 163, 198, 233, 485, 502, 603
TaqII	GACCGA	1 cut(s)	503
TasI	AATT	5 cut(s)	183, 218, 410, 872, 889
TatI	WGTACW	1 cut(s)	462
TfiI	GAWTC	1 cut(s)	436
Tru1I	TTAA	3 cut(s)	221, 456, 852
Tru9I	TTAA	3 cut(s)	221, 456, 852
TscAI	CASTG	1 cut(s)	90
TseFI	GTSAC	2 cut(s)	577, 687
TseI	GCWGC	1 cut(s)	715
Tsp45I	GTSAC	2 cut(s)	577, 687
TspDTI	ATGAA	7 cut(s)	333, 524, 658, 719, 758, 846, 876
TspGWI	ACGGA	1 cut(s)	410
TspRI	CASTG	1 cut(s)	90
Tth111I	GACNNNGTC	1 cut(s)	955
Van91I	CCANNNNNTGG	1 cut(s)	75
Vha464I	CTTAAG	1 cut(s)	455
VpaK11BI	GGWCC	2 cut(s)	97, 911
XagI	CCTNNNNNAGG	1 cut(s)	792
XceI	RCATGY	1 cut(s)	869
XmiI	GTMKAC	1 cut(s)	959
XmnI	GAANNNNTTC	3 cut(s)	192, 324, 929
ZrmI	AGTACT	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.