Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

5877617 .. 5879780

Gene Structure 2164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G079400.1_v2.0.a1.CDS.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGCCCAGCCTTGAGAGCGGAGATCATCATTTTTGGTCCCGAGCCAGGCAGTTCGAGCTGGCAGAACAAATTGCGAACGCAAATGCAATTCACAAATTGGTGAGAGACAGTGAGTTCTACTTCCTCTCTGCTATCTACTCTCCTTTTTCTTTGAAAATGTATTCTGGAAGCTTGCCATTGGAGACCTATAACCTCTACAGAGCTCTGGAATTTCATATCATGCAAACCATACTTGAATCGTTTTCAATCCTGAGAGAAAATTGTGATGGCTACGATGCACACCTTCTTCTTCAGCTGGAGGCTCAACTTATTGGGGAAGCAAAGCTTACATTGGAAACAGAGTTAATTGCTAAGCTTAATGAGGAAGATCTACCTGAAGCAGTTTCTATATTCACGGAAGAACTTTTAATGCAAGCTGAGTTGTCTGTAGTAGGATCTTCTGACGATCAAACTATTGCCTACACCATTGCTACTGTGGCAGCTTGGTTGAGACTTTACCACGTTATAGGTCAGCATTTTATGAATTGGATCCGAGGCAAGATTGAAGGAAATCACCTATACCAAGACTGGTTTGACCGAGGTTGGTTCAAGTTTTTTGGTTGCGTTCATCGAAACTGGTTTGATTTTTATGCTTCTGCTGAGTTTAAGGAGTTGGTTGTGCAAACTGAATTCCTTCTTGATCAATCATGTCAGAATTTGTCCGAGGTCCAGCTTCAAATACTTGATAATCGCTATAGAACTAGCCTAAAAGATGCAGTATCTTTCTTTTCCCATGAATCTGTGCATGCATCTGTCCGAGCTGTAGTTCCTATTCTACCAAAGCCTCCTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006725 GO:0006766 GO:0006767 GO:0006772 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009110 GO:0009228 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0017144 GO:0018130 GO:0019438 GO:0034641 GO:0042131 GO:0042364 GO:0042578 GO:0042723 GO:0042724 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0072527 GO:0072528 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TENA_THI-4

Protein Analysis

278

Amino Acids

32.07

Weight (kDa)

5.11

Isoelectric Point (pI)

43.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	18
AciI	CCGC	1 cut(s)	18
AclWI	GGATC	3 cut(s)	442, 523, 536
AcsI	RAATTY	3 cut(s)	209, 668, 694
AcuI	CTGAAG	2 cut(s)	275, 396
AfiI	CCNNNNNNNGG	1 cut(s)	45
AgsI	TTSAA	6 cut(s)	154, 236, 246, 545, 589, 716
AjnI	CCWGG	1 cut(s)	44
Alw21I	GWGCWC	1 cut(s)	205
Alw26I	GTCTC	3 cut(s)	99, 176, 484
AlwI	GGATC	3 cut(s)	442, 523, 536
Ama87I	CYCGRG	1 cut(s)	39
ApeKI	GCWGC	1 cut(s)	479
ApoI	RAATTY	3 cut(s)	209, 668, 694
Asp700I	GAANNNNTTC	1 cut(s)	672
AspS9I	GGNCC	2 cut(s)	36, 706
AsuHPI	GGTGA	2 cut(s)	112, 545
AvaI	CYCGRG	1 cut(s)	39
AvaII	GGWCC	2 cut(s)	36, 706
BamHI	GGATCC	1 cut(s)	528
BanII	GRGCYC	1 cut(s)	205
Bbv12I	GWGCWC	1 cut(s)	205
BbvI	GCAGC	1 cut(s)	491
BccI	CCATC	1 cut(s)	260
BciT130I	CCWGG	1 cut(s)	46
BclI	TGATCA	1 cut(s)	679
BcoDI	GTCTC	3 cut(s)	99, 176, 484
BfaI	CTAG	1 cut(s)	741
BfmI	CTRYAG	4 cut(s)	196, 426, 733, 801
BglII	AGATCT	1 cut(s)	367
BisI	GCNGC	1 cut(s)	480
BlpI	GCTNAGC	1 cut(s)	351
BlsI	GCNGC	1 cut(s)	481
Bme1390I	CCNGG	1 cut(s)	46
Bme18I	GGWCC	2 cut(s)	36, 706
BmeT110I	CYCGRG	1 cut(s)	39
BmgT120I	GGNCC	2 cut(s)	36, 706
BmiI	GGNNCC	2 cut(s)	38, 530
BmrFI	CCNGG	1 cut(s)	46
BmsI	GCATC	3 cut(s)	265, 742, 797
BpmI	CTGGAG	1 cut(s)	317
Bpu1102I	GCTNAGC	1 cut(s)	351
BpuEI	CTTGAG	1 cut(s)	32
BsaI	GGTCTC	1 cut(s)	176
BsaJI	CCNNGG	3 cut(s)	532, 577, 702
Bsc4I	CCNNNNNNNGG	1 cut(s)	45
Bse1I	ACTGG	2 cut(s)	572, 620
Bse3DI	GCAATG	1 cut(s)	465
BseBI	CCWGG	1 cut(s)	46
BseDI	CCNNGG	3 cut(s)	532, 577, 702
BseLI	CCNNNNNNNGG	1 cut(s)	45
BseMI	GCAATG	1 cut(s)	465
BseMII	CTCAG	3 cut(s)	242, 408, 630
BseNI	ACTGG	2 cut(s)	572, 620
BseXI	GCAGC	1 cut(s)	491
BseYI	CCCAGC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	205
BsiHKCI	CYCGRG	1 cut(s)	39
BslFI	GGGAC	1 cut(s)	22
BslI	CCNNNNNNNGG	1 cut(s)	45
BsmAI	GTCTC	3 cut(s)	99, 176, 484
BsmFI	GGGAC	1 cut(s)	22
Bso31I	GGTCTC	1 cut(s)	176
BsoBI	CYCGRG	1 cut(s)	39
Bsp1286I	GDGCHC	1 cut(s)	205
Bsp143I	GATC	6 cut(s)	22, 367, 434, 445, 528, 679
Bsp1720I	GCTNAGC	1 cut(s)	351
BspACI	CCGC	1 cut(s)	18
BspCNI	CTCAG	3 cut(s)	243, 409, 631
BspLI	GGNNCC	2 cut(s)	38, 530
BspPI	GGATC	3 cut(s)	442, 523, 536
BspTNI	GGTCTC	1 cut(s)	176
BsrBI	CCGCTC	1 cut(s)	18
BsrDI	GCAATG	1 cut(s)	465
BsrI	ACTGG	2 cut(s)	572, 620
BssECI	CCNNGG	3 cut(s)	532, 577, 702
BssMI	GATC	6 cut(s)	22, 367, 434, 445, 528, 679
Bst2UI	CCWGG	1 cut(s)	46
Bst4CI	ACNGT	2 cut(s)	110, 475
BstC8I	GCNNGC	4 cut(s)	60, 173, 414, 786
BstDEI	CTNAG	4 cut(s)	251, 351, 417, 639
BstKTI	GATC	6 cut(s)	25, 370, 437, 448, 531, 682
BstMAI	GTCTC	3 cut(s)	99, 176, 484
BstMBI	GATC	6 cut(s)	22, 367, 434, 445, 528, 679
BstMWI	GCNNNNNNNGC	3 cut(s)	15, 55, 476
BstNI	CCWGG	1 cut(s)	46
BstNSI	RCATGY	1 cut(s)	788
BstSCI	CCNGG	1 cut(s)	44
BstSFI	CTRYAG	4 cut(s)	196, 426, 733, 801
BstV1I	GCAGC	1 cut(s)	491
BstX2I	RGATCY	3 cut(s)	367, 434, 528
BstYI	RGATCY	3 cut(s)	367, 434, 528
BtsIMutI	CAGTG	1 cut(s)	115
Cac8I	GCNNGC	4 cut(s)	60, 173, 414, 786
Cfr13I	GGNCC	2 cut(s)	36, 706
CviAII	CATG	4 cut(s)	220, 687, 773, 785
DdeI	CTNAG	4 cut(s)	251, 351, 417, 639
DpnI	GATC	6 cut(s)	24, 369, 436, 447, 530, 681
DpnII	GATC	6 cut(s)	22, 367, 434, 445, 528, 679
Ecl136II	GAGCTC	1 cut(s)	203
Eco24I	GRGCYC	1 cut(s)	205
Eco31I	GGTCTC	1 cut(s)	176
Eco47I	GGWCC	2 cut(s)	36, 706
Eco53kI	GAGCTC	1 cut(s)	203
Eco57I	CTGAAG	2 cut(s)	275, 396
Eco88I	CYCGRG	1 cut(s)	39
EcoICRI	GAGCTC	1 cut(s)	203
EcoRI	GAATTC	1 cut(s)	668
EcoRII	CCWGG	1 cut(s)	44
EcoT22I	ATGCAT	1 cut(s)	790
EcoT38I	GRGCYC	1 cut(s)	205
FaeI	CATG	4 cut(s)	223, 690, 776, 788
FalI	AAGNNNNNCTT	2 cut(s)	309, 341
FaqI	GGGAC	1 cut(s)	22
FatI	CATG	4 cut(s)	219, 686, 772, 784
FbaI	TGATCA	1 cut(s)	679
Fnu4HI	GCNGC	1 cut(s)	480
FriOI	GRGCYC	1 cut(s)	205
Fsp4HI	GCNGC	1 cut(s)	480
FspBI	CTAG	1 cut(s)	741
GluI	GCNGC	1 cut(s)	480
GsaI	CCCAGC	1 cut(s)	9
GsuI	CTGGAG	1 cut(s)	317
Hin1II	CATG	4 cut(s)	223, 690, 776, 788
HindIII	AAGCTT	3 cut(s)	169, 323, 353
HinfI	GANTC	2 cut(s)	236, 776
HphI	GGTGA	2 cut(s)	112, 545
Hpy188I	TCNGA	5 cut(s)	442, 533, 693, 703, 797
Hpy188III	TCNNGA	5 cut(s)	39, 165, 206, 250, 677
HpyAV	CCTTC	3 cut(s)	293, 539, 683
HpyCH4III	ACNGT	2 cut(s)	110, 475
HpyCH4IV	ACGT	1 cut(s)	501
HpyCH4V	TGCA	8 cut(s)	86, 223, 278, 412, 661, 755, 784, 788
HpyF10VI	GCNNNNNNNGC	3 cut(s)	15, 55, 476
HpyF3I	CTNAG	4 cut(s)	251, 351, 417, 639
HpySE526I	ACGT	1 cut(s)	501
Hsp92II	CATG	4 cut(s)	223, 690, 776, 788
Ksp22I	TGATCA	1 cut(s)	679
Kzo9I	GATC	6 cut(s)	22, 367, 434, 445, 528, 679
Lsp1109I	GCAGC	1 cut(s)	491
LweI	GCATC	3 cut(s)	265, 742, 797
MaeI	CTAG	1 cut(s)	741
MaeII	ACGT	1 cut(s)	501
MalI	GATC	6 cut(s)	24, 369, 436, 447, 530, 681
MbiI	CCGCTC	1 cut(s)	18
MboI	GATC	6 cut(s)	22, 367, 434, 445, 528, 679
MboII	GAAGA	5 cut(s)	278, 281, 377, 410, 429
MflI	RGATCY	3 cut(s)	367, 434, 528
MhlI	GDGCHC	1 cut(s)	205
MluCI	AATT	9 cut(s)	69, 87, 95, 209, 259, 345, 523, 668, 694
MnlI	CCTC	8 cut(s)	134, 203, 292, 355, 527, 572, 697, 834
Mph1103I	ATGCAT	1 cut(s)	790
MroXI	GAANNNNTTC	1 cut(s)	672
MseI	TTAA	4 cut(s)	344, 357, 407, 645
MspA1I	CMGCKG	1 cut(s)	295
MspR9I	CCNGG	1 cut(s)	46
MvaI	CCWGG	1 cut(s)	46
MwoI	GCNNNNNNNGC	3 cut(s)	15, 55, 476
NdeII	GATC	6 cut(s)	22, 367, 434, 445, 528, 679
NlaIII	CATG	4 cut(s)	223, 690, 776, 788
NlaIV	GGNNCC	2 cut(s)	38, 530
NsiI	ATGCAT	1 cut(s)	790
NspI	RCATGY	1 cut(s)	788
PaeI	GCATGC	1 cut(s)	788
PdmI	GAANNNNTTC	1 cut(s)	672
PfeI	GAWTC	2 cut(s)	236, 776
PkrI	GCNGC	1 cut(s)	481
Psp124BI	GAGCTC	1 cut(s)	205
Psp6I	CCWGG	1 cut(s)	44
PspFI	CCCAGC	1 cut(s)	5
PspGI	CCWGG	1 cut(s)	44
PspN4I	GGNNCC	2 cut(s)	38, 530
PspPI	GGNCC	2 cut(s)	36, 706
PsuI	RGATCY	3 cut(s)	367, 434, 528
PvuII	CAGCTG	1 cut(s)	295
SacI	GAGCTC	1 cut(s)	205
SaqAI	TTAA	4 cut(s)	344, 357, 407, 645
SatI	GCNGC	1 cut(s)	480
Sau3AI	GATC	6 cut(s)	22, 367, 434, 445, 528, 679
Sau96I	GGNCC	2 cut(s)	36, 706
ScrFI	CCNGG	1 cut(s)	46
SduI	GDGCHC	1 cut(s)	205
SfaNI	GCATC	3 cut(s)	265, 742, 797
SfcI	CTRYAG	4 cut(s)	196, 426, 733, 801
SinI	GGWCC	2 cut(s)	36, 706
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
SphI	GCATGC	1 cut(s)	788
Sse9I	AATT	9 cut(s)	69, 87, 95, 209, 259, 345, 523, 668, 694
SsiI	CCGC	1 cut(s)	18
SspMI	CTAG	1 cut(s)	741
SstI	GAGCTC	1 cut(s)	205
StyD4I	CCNGG	1 cut(s)	44
TaaI	ACNGT	2 cut(s)	110, 475
TaiI	ACGT	1 cut(s)	504
TaqI	TCGA	2 cut(s)	54, 610
TaqII	GACCGA	1 cut(s)	591
TasI	AATT	9 cut(s)	69, 87, 95, 209, 259, 345, 523, 668, 694
TfiI	GAWTC	2 cut(s)	236, 776
Tru1I	TTAA	4 cut(s)	344, 357, 407, 645
Tru9I	TTAA	4 cut(s)	344, 357, 407, 645
TscAI	CASTG	1 cut(s)	115
TseI	GCWGC	1 cut(s)	479
TspDTI	ATGAA	4 cut(s)	203, 536, 596, 789
TspGWI	ACGGA	1 cut(s)	410
TspRI	CASTG	1 cut(s)	115
VpaK11BI	GGWCC	2 cut(s)	36, 706
XapI	RAATTY	3 cut(s)	209, 668, 694
XceI	RCATGY	1 cut(s)	788
XcmI	CCANNNNNNNNNTGG	1 cut(s)	472
XmnI	GAANNNNTTC	1 cut(s)	672
XspI	CTAG	1 cut(s)	741
Zsp2I	ATGCAT	1 cut(s)	790

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.