Prupe.3G079500_v2.0.a1

TENA/THI-4/PQQC family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
N/A
Physical Location & Seq
Forward (+)
5881165 .. 5881825
661 bp
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UTR
Exon/CDS
Intron
Prupe.3G079500.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 417 bp
ATGAGCAGGGGACTGTTGCATTGCTCTGCAAACCAGATATTTTGGCATAATGAGGAGGGCATATCAACAGGTCAAGTGTCTAGAGTTTTGAAGTATCCAGGTCACTTGGCGTTATTACCGACGATACTATTACCTGAGTGCATCACAATTTGTGTAGGATGTGTTGTAGATGACCTACCTTGCCTCCTCAAGGCAGATATGGGTATAGTTGTTGAGCCGGCTGAGAGTCTTATCGCACTTGGGAACAACTTTGGAGTTAAGTTTCTCCCTCTGCTGGATATGCTGATGATGAAACAGAAAGATTGCGATATTGGAGAAGTTGTAGGGTGGAAACATCAGGGTAGTGGTTTGTTGTTTGTAGGGAGGAACTGGTGTGATGTTGCTGCCTTCATTTGTACCTTGCATGATGTTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

139

Amino Acids

15.11

Weight (kDa)

5.37

Isoelectric Point (pI)

34.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 397
AfiI CCNNNNNNNGG 2 cut(s) 190, 274
AgsI TTSAA 1 cut(s) 91
AjnI CCWGG 1 cut(s) 97
ApeKI GCWGC 1 cut(s) 383
BbvI GCAGC 1 cut(s) 370
BciT130I CCWGG 1 cut(s) 99
BciVI GTATCC 1 cut(s) 105
BfaI CTAG 1 cut(s) 81
BfuI GTATCC 1 cut(s) 105
BisI GCNGC 1 cut(s) 384
BlsI GCNGC 1 cut(s) 385
Bme1390I CCNGG 1 cut(s) 99
BmrFI CCNGG 1 cut(s) 99
BmsI GCATC 1 cut(s) 150
BpuEI CTTGAG 1 cut(s) 173
BsaXI ACNNNNNCTCC 4 cut(s) 168, 198, 306, 336
Bsc4I CCNNNNNNNGG 2 cut(s) 190, 274
Bse118I RCCGGY 1 cut(s) 217
Bse1I ACTGG 1 cut(s) 374
Bse3DI GCAATG 1 cut(s) 19
BseBI CCWGG 1 cut(s) 99
BseGI GGATG 1 cut(s) 164
BseLI CCNNNNNNNGG 2 cut(s) 190, 274
BseMI GCAATG 1 cut(s) 19
BseMII CTCAG 2 cut(s) 126, 213
BseNI ACTGG 1 cut(s) 374
BseRI GAGGAG 2 cut(s) 68, 176
BseXI GCAGC 1 cut(s) 370
BsiSI CCGG 1 cut(s) 218
BslFI GGGAC 1 cut(s) 24
BslI CCNNNNNNNGG 2 cut(s) 190, 274
BsmFI GGGAC 1 cut(s) 24
BspCNI CTCAG 2 cut(s) 127, 214
BsrDI GCAATG 1 cut(s) 19
BsrFI RCCGGY 1 cut(s) 217
BsrI ACTGG 1 cut(s) 374
BssAI RCCGGY 1 cut(s) 217
Bst2UI CCWGG 1 cut(s) 99
Bst4CI ACNGT 1 cut(s) 15
BstC8I GCNNGC 1 cut(s) 219
BstDEI CTNAG 2 cut(s) 135, 222
BstENI CCTNNNNNAGG 1 cut(s) 188
BstF5I GGATG 1 cut(s) 164
BstMWI GCNNNNNNNGC 1 cut(s) 280
BstNI CCWGG 1 cut(s) 99
BstSCI CCNGG 1 cut(s) 97
BstV1I GCAGC 1 cut(s) 370
BsuI GTATCC 1 cut(s) 105
BtsCI GGATG 1 cut(s) 164
Cac8I GCNNGC 1 cut(s) 219
Cfr10I RCCGGY 1 cut(s) 217
Csp6I GTAC 1 cut(s) 396
CviAII CATG 1 cut(s) 404
CviJI RGCY 2 cut(s) 217, 221
CviKI_1 RGCY 2 cut(s) 217, 221
CviQI GTAC 1 cut(s) 396
DdeI CTNAG 2 cut(s) 135, 222
EcoNI CCTNNNNNAGG 1 cut(s) 188
EcoRII CCWGG 1 cut(s) 97
FaeI CATG 1 cut(s) 407
FaiI YATR 6 cut(s) 48, 62, 200, 206, 281, 405
FaqI GGGAC 1 cut(s) 24
FatI CATG 1 cut(s) 403
Fnu4HI GCNGC 1 cut(s) 384
FokI GGATG 1 cut(s) 171
Fsp4HI GCNGC 1 cut(s) 384
FspBI CTAG 1 cut(s) 81
GluI GCNGC 1 cut(s) 384
HapII CCGG 1 cut(s) 218
Hin1II CATG 1 cut(s) 407
HinfI GANTC 1 cut(s) 226
HpaII CCGG 1 cut(s) 218
Hpy188III TCNNGA 1 cut(s) 81
Hpy99I CGWCG 1 cut(s) 124
HpyAV CCTTC 1 cut(s) 397
HpyCH4III ACNGT 1 cut(s) 15
HpyCH4V TGCA 4 cut(s) 19, 29, 141, 403
HpyF10VI GCNNNNNNNGC 1 cut(s) 280
HpyF3I CTNAG 2 cut(s) 135, 222
Hsp92II CATG 1 cut(s) 407
KroI GCCGGC 1 cut(s) 217
KroNI GCCGGC 1 cut(s) 219
LpnPI CCDG 9 cut(s) 47, 54, 84, 111, 147, 231, 260, 323, 355
Lsp1109I GCAGC 1 cut(s) 370
LweI GCATC 1 cut(s) 150
MaeI CTAG 1 cut(s) 81
MaeIII GTNAC 1 cut(s) 101
MluCI AATT 1 cut(s) 147
MlyI GAGTC 1 cut(s) 235
MnlI CCTC 6 cut(s) 46, 49, 194, 197, 279, 357
MroNI GCCGGC 1 cut(s) 217
MseI TTAA 1 cut(s) 258
MspI CCGG 1 cut(s) 218
MspR9I CCNGG 1 cut(s) 99
MvaI CCWGG 1 cut(s) 99
MwoI GCNNNNNNNGC 1 cut(s) 280
NaeI GCCGGC 1 cut(s) 219
NgoMIV GCCGGC 1 cut(s) 217
NlaIII CATG 1 cut(s) 407
NmuCI GTSAC 1 cut(s) 101
PdiI GCCGGC 1 cut(s) 219
PkrI GCNGC 1 cut(s) 385
PleI GAGTC 1 cut(s) 234
PpsI GAGTC 1 cut(s) 234
Psp6I CCWGG 1 cut(s) 97
PspGI CCWGG 1 cut(s) 97
RsaI GTAC 1 cut(s) 397
RsaNI GTAC 1 cut(s) 396
SaqAI TTAA 1 cut(s) 258
SatI GCNGC 1 cut(s) 384
SchI GAGTC 1 cut(s) 235
ScrFI CCNGG 1 cut(s) 99
SetI ASST 6 cut(s) 73, 103, 136, 177, 181, 401
SfaNI GCATC 1 cut(s) 150
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
Sse9I AATT 1 cut(s) 147
SspMI CTAG 1 cut(s) 81
StyD4I CCNGG 1 cut(s) 97
TaaI ACNGT 1 cut(s) 15
TasI AATT 1 cut(s) 147
Tru1I TTAA 1 cut(s) 258
Tru9I TTAA 1 cut(s) 258
TseFI GTSAC 1 cut(s) 101
TseI GCWGC 1 cut(s) 383
Tsp45I GTSAC 1 cut(s) 101
TspDTI ATGAA 2 cut(s) 305, 379
XagI CCTNNNNNAGG 1 cut(s) 188
XbaI TCTAGA 1 cut(s) 80
XspI CTAG 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.