Prupe.3G081100_v2.0.a1

Protein of unknown function (DUF3752)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
N/A
Physical Location & Seq
Forward (+)
6026603 .. 6027630
1028 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G081100.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 975 bp
ATGGCCAGACCTGCTGCCGGCAGCTCGAGCAGATGCATGGAGGAAGATGATACTGGTCCTAAACGAAGGATAATTGGCCCTTCGTTGCCATCAGCTGAGTTACTTGCTGCTGCTGCTGCAGCCAAACTGACAGAAGCACAGGCTGAGCTCAGAGAAGCTGTGTTGGAAGAAGATAGTGAACTTCTGATAGGACCTCCACCACCTGCCGTGGTTGCTGAAACTGAATCAGCTAATGAAGCTGAGCGGATCATGGATTCTGCGGATGATGGTTTATATGATATCTTAGGAGCCAACCAAAATATGTCAGCTGAGAATATAAAGAAAAGGTACTGGAAGATGTCTCTTTTGGTGCACCCTGATAAATGCTCGCATCCTCGCGCTCAACAAGCATTTGTTAAGTTGAACAAAGCTTTCAAAGAATTACAAGATCCAGATAAGAGGAAAGTGCTGGATGACAAAATTCAACTCAAGGAGGAACGCGAAAAATTTAGGGTTGAGTTGAAGGCAATGCGTGAGGCTGCACAGTGGAGAAAGCTACAAGGAATATGCATGGAGGGTGATGATGAGCTCCTAGCAGACATGATGGATGTTAAGGTGGCACCCAAAAGAGATGAGTGGATGACAACGCTGCCACCCGAAAGGAAACACAGTATGCCTCCTAAGCGATCGACAAGATTTAACAGTAGAAAAGAAAAGGTTTCAGATGGAGATTTGGTAGACAAATACACTAAAGAAAAACGATCGAAATCACTCTTGCAAAAACACAAAGAAGATACTGCAAAACGTTCAAAGAGAAAATCCAAGAAACAACAGACAGAGAAGGAGGACTGGGTGGGAAAACATCCGTGGAAGCCTTGGGATCGTGAGAAGGATTTGGCAGGGGGAGGACAGAGAGTAAAATTGGATTCAGAAAACATGAATCAAGCTTTAACATCGCGATTTTCTTCCGGCTCATACGAGAGGAACTTCCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001664 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0050780
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3752 DnaJ

Protein Analysis

325

Amino Acids

36.93

Weight (kDa)

8.97

Isoelectric Point (pI)

53.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 211
Acc36I ACCTGC 2 cut(s) 19, 211
AccB1I GGYRCC 1 cut(s) 598
AccBSI CCGCTC 1 cut(s) 244
AccI GTMKAC 1 cut(s) 717
AccII CGCG 3 cut(s) 378, 480, 937
AciI CCGC 2 cut(s) 244, 260
AclI AACGTT 1 cut(s) 784
AclWI GGATC 3 cut(s) 254, 422, 867
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 459, 485
AfaI GTAC 1 cut(s) 329
AfiI CCNNNNNNNGG 1 cut(s) 17
AgsI TTSAA 5 cut(s) 403, 415, 464, 502, 789
Alw21I GWGCWC 3 cut(s) 150, 354, 570
Alw26I GTCTC 1 cut(s) 345
Alw44I GTGCAC 1 cut(s) 350
AlwI GGATC 3 cut(s) 254, 422, 867
Ama87I CYCGRG 1 cut(s) 25
AoxI GGCC 2 cut(s) 3, 76
ApaLI GTGCAC 1 cut(s) 350
ApeKI GCWGC 9 cut(s) 14, 21, 107, 110, 113, 116, 119, 518, 628
ApoI RAATTY 2 cut(s) 459, 485
AspLEI GCGC 1 cut(s) 380
AspS9I GGNCC 3 cut(s) 56, 77, 191
AsuHPI GGTGA 1 cut(s) 569
AvaI CYCGRG 1 cut(s) 25
AvaII GGWCC 2 cut(s) 56, 191
BaeGI GKGCMC 1 cut(s) 354
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 598
BanII GRGCYC 2 cut(s) 150, 570
Bbv12I GWGCWC 3 cut(s) 150, 354, 570
BbvI GCAGC 8 cut(s) 33, 94, 97, 100, 103, 131, 505, 615
BccI CCATC 4 cut(s) 97, 260, 577, 698
BceAI ACGGC 1 cut(s) 191
BcoDI GTCTC 1 cut(s) 345
BfaI CTAG 1 cut(s) 572
BfmI CTRYAG 1 cut(s) 117
BfuAI ACCTGC 2 cut(s) 19, 211
BisI GCNGC 9 cut(s) 15, 22, 108, 111, 114, 117, 120, 519, 629
BlpI GCTNAGC 2 cut(s) 144, 240
BlsI GCNGC 9 cut(s) 16, 23, 109, 112, 115, 118, 121, 520, 630
Bme18I GGWCC 2 cut(s) 56, 191
BmeT110I CYCGRG 1 cut(s) 25
BmgT120I GGNCC 3 cut(s) 56, 77, 191
BmiI GGNNCC 2 cut(s) 289, 600
BmrI ACTGGG 1 cut(s) 838
BmsI GCATC 2 cut(s) 23, 379
BmuI ACTGGG 1 cut(s) 838
Bpu10I CCTNAGC 1 cut(s) 660
Bpu1102I GCTNAGC 2 cut(s) 144, 240
BpuEI CTTGAG 1 cut(s) 452
BsaBI GATNNNNATC 1 cut(s) 745
BsaJI CCNNGG 3 cut(s) 207, 845, 854
BsaXI ACNNNNNCTCC 2 cut(s) 699, 729
Bsc4I CCNNNNNNNGG 1 cut(s) 17
Bse118I RCCGGY 1 cut(s) 17
Bse1I ACTGG 3 cut(s) 58, 335, 833
Bse3DI GCAATG 1 cut(s) 513
Bse8I GATNNNNATC 1 cut(s) 745
BseDI CCNNGG 3 cut(s) 207, 845, 854
BseGI GGATG 6 cut(s) 268, 370, 457, 592, 624, 841
BseJI GATNNNNATC 1 cut(s) 745
BseLI CCNNNNNNNGG 1 cut(s) 17
BseMI GCAATG 1 cut(s) 513
BseMII CTCAG 5 cut(s) 87, 135, 163, 231, 300
BseNI ACTGG 3 cut(s) 58, 335, 833
BseSI GKGCMC 1 cut(s) 354
BseXI GCAGC 8 cut(s) 33, 94, 97, 100, 103, 131, 505, 615
BsgI GTGCAG 1 cut(s) 504
Bsh1236I CGCG 3 cut(s) 378, 480, 937
Bsh1285I CGRYCG 2 cut(s) 668, 743
BshFI GGCC 2 cut(s) 5, 78
BshNI GGYRCC 1 cut(s) 598
BsiEI CGRYCG 2 cut(s) 668, 743
BsiHKAI GWGCWC 3 cut(s) 150, 354, 570
BsiHKCI CYCGRG 1 cut(s) 25
BsiSI CCGG 2 cut(s) 18, 948
BslI CCNNNNNNNGG 1 cut(s) 17
BsmAI GTCTC 1 cut(s) 345
BsnI GGCC 2 cut(s) 5, 78
BsoBI CYCGRG 1 cut(s) 25
Bsp1286I GDGCHC 3 cut(s) 150, 354, 570
Bsp143I GATC 5 cut(s) 246, 427, 665, 740, 859
Bsp1720I GCTNAGC 2 cut(s) 144, 240
Bsp68I TCGCGA 1 cut(s) 937
BspACI CCGC 2 cut(s) 244, 260
BspANI GGCC 2 cut(s) 5, 78
BspCNI CTCAG 5 cut(s) 88, 136, 162, 232, 301
BspFNI CGCG 3 cut(s) 378, 480, 937
BspLI GGNNCC 2 cut(s) 289, 600
BspMAI CTGCAG 1 cut(s) 121
BspMI ACCTGC 2 cut(s) 19, 211
BspPI GGATC 3 cut(s) 254, 422, 867
BspT107I GGYRCC 1 cut(s) 598
BsrBI CCGCTC 1 cut(s) 244
BsrDI GCAATG 1 cut(s) 513
BsrFI RCCGGY 1 cut(s) 17
BsrI ACTGG 3 cut(s) 58, 335, 833
BssAI RCCGGY 1 cut(s) 17
BssECI CCNNGG 3 cut(s) 207, 845, 854
BssMI GATC 5 cut(s) 246, 427, 665, 740, 859
BssT1I CCWWGG 1 cut(s) 854
Bst4CI ACNGT 3 cut(s) 525, 650, 683
BstC8I GCNNGC 2 cut(s) 19, 368
BstDEI CTNAG 7 cut(s) 96, 144, 149, 240, 283, 309, 660
BstDSI CCRYGG 2 cut(s) 207, 845
BstF5I GGATG 6 cut(s) 268, 370, 457, 592, 624, 841
BstFNI CGCG 3 cut(s) 378, 480, 937
BstHHI GCGC 1 cut(s) 380
BstKTI GATC 5 cut(s) 249, 430, 668, 743, 862
BstMAI GTCTC 1 cut(s) 345
BstMBI GATC 5 cut(s) 246, 427, 665, 740, 859
BstMCI CGRYCG 2 cut(s) 668, 743
BstMWI GCNNNNNNNGC 9 cut(s) 11, 27, 113, 116, 119, 212, 236, 386, 661
BstSFI CTRYAG 1 cut(s) 117
BstSLI GKGCMC 1 cut(s) 354
BstUI CGCG 3 cut(s) 378, 480, 937
BstV1I GCAGC 8 cut(s) 33, 94, 97, 100, 103, 131, 505, 615
BstX2I RGATCY 1 cut(s) 427
BstYI RGATCY 1 cut(s) 427
BsuRI GGCC 2 cut(s) 5, 78
BtgI CCRYGG 2 cut(s) 207, 845
BtgZI GCGATG 1 cut(s) 918
BtsCI GGATG 6 cut(s) 268, 370, 457, 592, 624, 841
BtsIMutI CAGTG 1 cut(s) 530
BtuMI TCGCGA 1 cut(s) 937
BveI ACCTGC 2 cut(s) 19, 211
Cac8I GCNNGC 2 cut(s) 19, 368
CfoI GCGC 1 cut(s) 380
Cfr10I RCCGGY 1 cut(s) 17
Cfr13I GGNCC 3 cut(s) 56, 77, 191
Csp6I GTAC 1 cut(s) 328
CviAII CATG 5 cut(s) 37, 250, 550, 580, 916
CviQI GTAC 1 cut(s) 328
DdeI CTNAG 7 cut(s) 96, 144, 149, 240, 283, 309, 660
DpnI GATC 5 cut(s) 248, 429, 667, 742, 861
DpnII GATC 5 cut(s) 246, 427, 665, 740, 859
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 2 cut(s) 148, 568
Eco130I CCWWGG 1 cut(s) 854
Eco24I GRGCYC 2 cut(s) 150, 570
Eco32I GATATC 1 cut(s) 280
Eco47I GGWCC 2 cut(s) 56, 191
Eco53kI GAGCTC 2 cut(s) 148, 568
Eco88I CYCGRG 1 cut(s) 25
EcoICRI GAGCTC 2 cut(s) 148, 568
EcoO109I RGGNCCY 1 cut(s) 191
EcoRV GATATC 1 cut(s) 280
EcoT14I CCWWGG 1 cut(s) 854
EcoT22I ATGCAT 2 cut(s) 38, 551
EcoT38I GRGCYC 2 cut(s) 150, 570
ErhI CCWWGG 1 cut(s) 854
FaeI CATG 5 cut(s) 40, 253, 553, 583, 919
FatI CATG 5 cut(s) 36, 249, 549, 579, 915
FblI GTMKAC 1 cut(s) 717
Fnu4HI GCNGC 9 cut(s) 15, 22, 108, 111, 114, 117, 120, 519, 629
FokI GGATG 6 cut(s) 275, 357, 464, 599, 631, 828
FriOI GRGCYC 2 cut(s) 150, 570
Fsp4HI GCNGC 9 cut(s) 15, 22, 108, 111, 114, 117, 120, 519, 629
FspBI CTAG 1 cut(s) 572
GlaI GCGC 1 cut(s) 379
GluI GCNGC 9 cut(s) 15, 22, 108, 111, 114, 117, 120, 519, 629
HaeIII GGCC 2 cut(s) 5, 78
HapII CCGG 2 cut(s) 18, 948
HhaI GCGC 1 cut(s) 380
Hin1II CATG 5 cut(s) 40, 253, 553, 583, 919
Hin6I GCGC 1 cut(s) 378
HinP1I GCGC 1 cut(s) 378
HindIII AAGCTT 2 cut(s) 408, 924
HinfI GANTC 4 cut(s) 224, 254, 905, 919
HpaII CCGG 2 cut(s) 18, 948
HphI GGTGA 1 cut(s) 569
Hpy166II GTNNAC 3 cut(s) 179, 352, 718
Hpy188I TCNGA 4 cut(s) 152, 186, 703, 910
Hpy188III TCNNGA 3 cut(s) 431, 863, 936
Hpy8I GTNNAC 3 cut(s) 179, 352, 718
HpyAV CCTTC 5 cut(s) 60, 90, 496, 814, 862
HpyCH4III ACNGT 3 cut(s) 525, 650, 683
HpyCH4IV ACGT 1 cut(s) 784
HpyCH4V TGCA 7 cut(s) 36, 119, 352, 521, 549, 757, 779
HpyF10VI GCNNNNNNNGC 9 cut(s) 11, 27, 113, 116, 119, 212, 236, 386, 661
HpyF3I CTNAG 7 cut(s) 96, 144, 149, 240, 283, 309, 660
HpySE526I ACGT 1 cut(s) 784
Hsp92II CATG 5 cut(s) 40, 253, 553, 583, 919
HspAI GCGC 1 cut(s) 378
KroI GCCGGC 1 cut(s) 17
KroNI GCCGGC 1 cut(s) 19
Kzo9I GATC 5 cut(s) 246, 427, 665, 740, 859
LmnI GCTCC 2 cut(s) 287, 573
Lsp1109I GCAGC 8 cut(s) 33, 94, 97, 100, 103, 131, 505, 615
LweI GCATC 2 cut(s) 23, 379
MaeI CTAG 1 cut(s) 572
MaeII ACGT 1 cut(s) 784
MaeIII GTNAC 1 cut(s) 99
MalI GATC 5 cut(s) 248, 429, 667, 742, 861
MbiI CCGCTC 1 cut(s) 244
MboI GATC 5 cut(s) 246, 427, 665, 740, 859
MboII GAAGA 6 cut(s) 56, 179, 182, 346, 782, 936
MflI RGATCY 1 cut(s) 427
MhlI GDGCHC 3 cut(s) 150, 354, 570
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 72, 419, 459, 485, 899
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 144
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 2 cut(s) 38, 551
MroNI GCCGGC 1 cut(s) 17
MscI TGGCCA 1 cut(s) 5
MseI TTAA 5 cut(s) 396, 591, 678, 929, 973
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 95, 308
MspI CCGG 2 cut(s) 18, 948
MvnI CGCG 3 cut(s) 378, 480, 937
MwoI GCNNNNNNNGC 9 cut(s) 11, 27, 113, 116, 119, 212, 236, 386, 661
NaeI GCCGGC 1 cut(s) 19
NdeII GATC 5 cut(s) 246, 427, 665, 740, 859
NgoMIV GCCGGC 1 cut(s) 17
NlaIII CATG 5 cut(s) 40, 253, 553, 583, 919
NlaIV GGNNCC 2 cut(s) 289, 600
NruI TCGCGA 1 cut(s) 937
NsiI ATGCAT 2 cut(s) 38, 551
PaeR7I CTCGAG 1 cut(s) 25
PaqCI CACCTGC 1 cut(s) 211
PdiI GCCGGC 1 cut(s) 19
PfeI GAWTC 4 cut(s) 224, 254, 905, 919
PkrI GCNGC 9 cut(s) 16, 23, 109, 112, 115, 118, 121, 520, 630
Ple19I CGATCG 2 cut(s) 668, 743
PpuMI RGGWCCY 1 cut(s) 191
Psp124BI GAGCTC 2 cut(s) 150, 570
Psp1406I AACGTT 1 cut(s) 784
Psp5II RGGWCCY 1 cut(s) 191
PspN4I GGNNCC 2 cut(s) 289, 600
PspPI GGNCC 3 cut(s) 56, 77, 191
PspPPI RGGWCCY 1 cut(s) 191
PspXI VCTCGAGB 1 cut(s) 25
PstI CTGCAG 1 cut(s) 121
PsuI RGATCY 1 cut(s) 427
PvuI CGATCG 2 cut(s) 668, 743
PvuII CAGCTG 2 cut(s) 95, 308
RruI TCGCGA 1 cut(s) 937
RsaI GTAC 1 cut(s) 329
RsaNI GTAC 1 cut(s) 328
SacI GAGCTC 2 cut(s) 150, 570
SaqAI TTAA 5 cut(s) 396, 591, 678, 929, 973
SatI GCNGC 9 cut(s) 15, 22, 108, 111, 114, 117, 120, 519, 629
Sau3AI GATC 5 cut(s) 246, 427, 665, 740, 859
Sau96I GGNCC 3 cut(s) 56, 77, 191
SduI GDGCHC 3 cut(s) 150, 354, 570
SfaNI GCATC 2 cut(s) 23, 379
SfcI CTRYAG 1 cut(s) 117
Sfr274I CTCGAG 1 cut(s) 25
SinI GGWCC 2 cut(s) 56, 191
SlaI CTCGAG 1 cut(s) 25
SmlI CTYRAG 2 cut(s) 25, 467
SmoI CTYRAG 2 cut(s) 25, 467
Sse9I AATT 5 cut(s) 72, 419, 459, 485, 899
SsiI CCGC 2 cut(s) 244, 260
SspMI CTAG 1 cut(s) 572
SstI GAGCTC 2 cut(s) 150, 570
StyI CCWWGG 1 cut(s) 854
TaaI ACNGT 3 cut(s) 525, 650, 683
TaiI ACGT 1 cut(s) 787
TaqI TCGA 3 cut(s) 26, 668, 743
TasI AATT 5 cut(s) 72, 419, 459, 485, 899
TfiI GAWTC 4 cut(s) 224, 254, 905, 919
Tru1I TTAA 5 cut(s) 396, 591, 678, 929, 973
Tru9I TTAA 5 cut(s) 396, 591, 678, 929, 973
TscAI CASTG 1 cut(s) 530
TseI GCWGC 9 cut(s) 14, 21, 107, 110, 113, 116, 119, 518, 628
TspDTI ATGAA 2 cut(s) 249, 932
TspGWI ACGGA 1 cut(s) 834
TspRI CASTG 1 cut(s) 530
VneI GTGCAC 1 cut(s) 350
VpaK11BI GGWCC 2 cut(s) 56, 191
XapI RAATTY 2 cut(s) 459, 485
XhoI CTCGAG 1 cut(s) 25
XmiI GTMKAC 1 cut(s) 717
XspI CTAG 1 cut(s) 572
Zsp2I ATGCAT 2 cut(s) 38, 551
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.