Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

6224301 .. 6226764

Gene Structure 2464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G084500.1_v2.0.a1.CDS.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGAACAAACCAATTATCTTCGCGTCCTTATGCCTTTTAATAATTCCCGTGGTGGTTTTCGCCGACTGCTCCGGTGAGGCTGAGGCTACTGAAGCTGGGCAGGGGCACAAACCCCAGGCCCTAAAATTAAAAGTCGCAGCCATTGCATTCGTACTGTTTGCTGGCGCAATGGGTGTTGGCATTCCCATTCTTGGGAAGGCCATACCTTGTCTAAATCCGGGCAGCAGCCTGTTTTCAATAATCAAGGTGTTTGCAGCCGGTGTCATATTGGCCACCGGCTTCATTCATGTCCTTCCCGATGCCTTCGAAAGCTTGACGTCTCCATGCCTGAAGGAGAACCCGTGGAGGATGTTTCCCTTCACTGGGTTTGTGGCGACGGTTGCTGCCATTGGAACTTTGATTAGTAACAGGGTTTTGGAGTTGGGTACTGTCGTCCACTCCATCATCATAGGAATCTCCTTGGGTGTTTCTGGAAGTCCAGACACCATAAGGCCCTTAGTTGCTGCGTTAGCCTTTTATCAATTTTTTGAAGGCATAGGCCTTGGTGGATGTATAGCTCAGGCGAATTTCAAGTCTCGAGCAACTGCAGTCATGGCACTGTTCTTCTCCCTCACAACTCCTATTGGAGTTGCGATCGGGATTGGAATATCGAACATCTATACAGAAAACAGCCCGACAGCCCTTGTGGTTGAAGGCGTTTTAAACGCGGCTTCAGCGGGTATTTTAATTTACATGTCGCTGGTCGATATGCTTGTGGCCGAGCTTATGAACTCAAAGCTGCAGAGCAATATAAGGCTTCTGGCTGGGGCCAATTTATCAGTTCTTCTTGGGGCAGGGTGCATATCATTATTAGCCATATGGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0071944 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

289

Amino Acids

29.78

Weight (kDa)

6.81

Isoelectric Point (pI)

26.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	320
AccII	CGCG	2 cut(s)	23, 707
AciI	CCGC	2 cut(s)	707, 716
AcoI	YGGCCR	2 cut(s)	270, 756
AcsI	RAATTY	1 cut(s)	565
AcuI	CTGAAG	3 cut(s)	111, 350, 696
AcyI	GRCGYC	1 cut(s)	317
AfaI	GTAC	2 cut(s)	153, 427
AfiI	CCNNNNNNNGG	4 cut(s)	191, 192, 362, 363
AflIII	ACRYGT	1 cut(s)	732
AgsI	TTSAA	4 cut(s)	237, 530, 571, 692
AjnI	CCWGG	1 cut(s)	114
AluBI	AGCT	5 cut(s)	95, 312, 557, 763, 778
AluI	AGCT	5 cut(s)	95, 312, 557, 763, 778
Alw26I	GTCTC	2 cut(s)	324, 579
Ama87I	CYCGRG	1 cut(s)	576
AoxI	GGCC	7 cut(s)	117, 198, 270, 491, 538, 756, 807
ApeKI	GCWGC	7 cut(s)	137, 222, 225, 254, 383, 503, 778
ApoI	RAATTY	1 cut(s)	565
ArsI	GACNNNNNNTTYG	2 cut(s)	557, 589
AspLEI	GCGC	1 cut(s)	167
AspS9I	GGNCC	3 cut(s)	118, 492, 807
AsuC2I	CCSGG	1 cut(s)	219
AsuHPI	GGTGA	1 cut(s)	86
AsuII	TTCGAA	1 cut(s)	306
AvaI	CYCGRG	1 cut(s)	576
BaeGI	GKGCMC	1 cut(s)	108
BaeI	ACNNNNGTAYC	2 cut(s)	417, 450
BalI	TGGCCA	1 cut(s)	272
BbvCI	CCTCAGC	1 cut(s)	81
BbvI	GCAGC	7 cut(s)	149, 234, 237, 266, 370, 490, 765
BccI	CCATC	1 cut(s)	449
BciT130I	CCWGG	1 cut(s)	116
BcnI	CCSGG	1 cut(s)	219
BcoDI	GTCTC	2 cut(s)	324, 579
BfmI	CTRYAG	2 cut(s)	585, 779
BisI	GCNGC	8 cut(s)	138, 223, 226, 255, 384, 504, 708, 779
BlsI	GCNGC	8 cut(s)	139, 224, 227, 256, 385, 505, 709, 780
Bme1390I	CCNGG	2 cut(s)	116, 219
BmeT110I	CYCGRG	1 cut(s)	576
BmgT120I	GGNCC	3 cut(s)	118, 492, 807
BmiI	GGNNCC	1 cut(s)	808
BmrFI	CCNGG	2 cut(s)	116, 219
BmrI	ACTGGG	1 cut(s)	372
BmsI	GCATC	1 cut(s)	289
BmuI	ACTGGG	1 cut(s)	372
Bpu10I	CCTNAGC	2 cut(s)	81, 558
Bpu14I	TTCGAA	1 cut(s)	306
BpuMI	CCSGG	1 cut(s)	219
BsaHI	GRCGYC	1 cut(s)	317
BsaJI	CCNNGG	5 cut(s)	48, 114, 341, 459, 541
BsaWI	WCCGGW	1 cut(s)	71
BsaXI	ACNNNNNCTCC	2 cut(s)	326, 356
Bsc4I	CCNNNNNNNGG	4 cut(s)	191, 192, 362, 363
Bse118I	RCCGGY	2 cut(s)	257, 275
Bse1I	ACTGG	1 cut(s)	367
Bse3DI	GCAATG	2 cut(s)	141, 174
BseBI	CCWGG	1 cut(s)	116
BseDI	CCNNGG	5 cut(s)	48, 114, 341, 459, 541
BseGI	GGATG	2 cut(s)	354, 554
BseLI	CCNNNNNNNGG	4 cut(s)	191, 192, 362, 363
BseMI	GCAATG	2 cut(s)	141, 174
BseMII	CTCAG	2 cut(s)	72, 572
BseNI	ACTGG	1 cut(s)	367
BseSI	GKGCMC	1 cut(s)	108
BseXI	GCAGC	7 cut(s)	149, 234, 237, 266, 370, 490, 765
BseYI	CCCAGC	2 cut(s)	95, 803
Bsh1236I	CGCG	2 cut(s)	23, 707
Bsh1285I	CGRYCG	1 cut(s)	636
BshFI	GGCC	7 cut(s)	119, 200, 272, 493, 540, 758, 809
BsiEI	CGRYCG	1 cut(s)	636
BsiHKCI	CYCGRG	1 cut(s)	576
BsiSI	CCGG	4 cut(s)	72, 218, 258, 276
BslI	CCNNNNNNNGG	4 cut(s)	191, 192, 362, 363
BsmAI	GTCTC	2 cut(s)	324, 579
BsmBI	CGTCTC	1 cut(s)	324
BsmI	GAATGC	2 cut(s)	146, 180
BsnI	GGCC	7 cut(s)	119, 200, 272, 493, 540, 758, 809
BsoBI	CYCGRG	1 cut(s)	576
Bsp119I	TTCGAA	1 cut(s)	306
Bsp1286I	GDGCHC	1 cut(s)	108
Bsp143I	GATC	1 cut(s)	633
BspACI	CCGC	2 cut(s)	707, 716
BspANI	GGCC	7 cut(s)	119, 200, 272, 493, 540, 758, 809
BspCNI	CTCAG	2 cut(s)	73, 571
BspFNI	CGCG	2 cut(s)	23, 707
BspLI	GGNNCC	1 cut(s)	808
BspMAI	CTGCAG	2 cut(s)	589, 783
BspT104I	TTCGAA	1 cut(s)	306
BsrDI	GCAATG	2 cut(s)	141, 174
BsrFI	RCCGGY	2 cut(s)	257, 275
BsrI	ACTGG	1 cut(s)	367
BssAI	RCCGGY	2 cut(s)	257, 275
BssECI	CCNNGG	5 cut(s)	48, 114, 341, 459, 541
BssMI	GATC	1 cut(s)	633
BssNI	GRCGYC	1 cut(s)	317
BssT1I	CCWWGG	2 cut(s)	459, 541
Bst2UI	CCWGG	1 cut(s)	116
Bst4CI	ACNGT	4 cut(s)	156, 379, 430, 600
BstACI	GRCGYC	1 cut(s)	317
BstAPI	GCANNNNNTGC	1 cut(s)	143
BstBI	TTCGAA	1 cut(s)	306
BstC8I	GCNNGC	1 cut(s)	163
BstDEI	CTNAG	4 cut(s)	81, 496, 558, 864
BstDSI	CCRYGG	2 cut(s)	48, 341
BstF5I	GGATG	2 cut(s)	354, 554
BstFNI	CGCG	2 cut(s)	23, 707
BstHHI	GCGC	1 cut(s)	167
BstKTI	GATC	1 cut(s)	636
BstMAI	GTCTC	2 cut(s)	324, 579
BstMBI	GATC	1 cut(s)	633
BstMCI	CGRYCG	1 cut(s)	636
BstMWI	GCNNNNNNNGC	6 cut(s)	92, 143, 380, 509, 593, 713
BstNI	CCWGG	1 cut(s)	116
BstNSI	RCATGY	1 cut(s)	736
BstSCI	CCNGG	2 cut(s)	114, 217
BstSFI	CTRYAG	2 cut(s)	585, 779
BstSLI	GKGCMC	1 cut(s)	108
BstUI	CGCG	2 cut(s)	23, 707
BstV1I	GCAGC	7 cut(s)	149, 234, 237, 266, 370, 490, 765
BsuRI	GGCC	7 cut(s)	119, 200, 272, 493, 540, 758, 809
BtgI	CCRYGG	2 cut(s)	48, 341
BtsCI	GGATG	2 cut(s)	354, 554
BtsIMutI	CAGTG	2 cut(s)	360, 596
Cac8I	GCNNGC	1 cut(s)	163
CfoI	GCGC	1 cut(s)	167
Cfr10I	RCCGGY	2 cut(s)	257, 275
Cfr13I	GGNCC	3 cut(s)	118, 492, 807
CseI	GACGC	1 cut(s)	12
Csp6I	GTAC	2 cut(s)	152, 426
CviAII	CATG	4 cut(s)	287, 324, 592, 733
CviQI	GTAC	2 cut(s)	152, 426
DdeI	CTNAG	4 cut(s)	81, 496, 558, 864
DpnI	GATC	1 cut(s)	635
DpnII	GATC	1 cut(s)	633
DraI	TTTAAA	1 cut(s)	702
EaeI	YGGCCR	2 cut(s)	270, 756
Eco130I	CCWWGG	2 cut(s)	459, 541
Eco147I	AGGCCT	1 cut(s)	540
Eco57I	CTGAAG	3 cut(s)	111, 350, 696
Eco88I	CYCGRG	1 cut(s)	576
EcoO109I	RGGNCCY	2 cut(s)	118, 492
EcoRII	CCWGG	1 cut(s)	114
EcoT14I	CCWWGG	2 cut(s)	459, 541
ErhI	CCWWGG	2 cut(s)	459, 541
Esp3I	CGTCTC	1 cut(s)	324
FaeI	CATG	4 cut(s)	290, 327, 595, 736
FatI	CATG	4 cut(s)	286, 323, 591, 732
FauI	CCCGC	1 cut(s)	709
FauNDI	CATATG	1 cut(s)	857
Fnu4HI	GCNGC	8 cut(s)	138, 223, 226, 255, 384, 504, 708, 779
FokI	GGATG	2 cut(s)	361, 561
Fsp4HI	GCNGC	8 cut(s)	138, 223, 226, 255, 384, 504, 708, 779
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	8 cut(s)	138, 223, 226, 255, 384, 504, 708, 779
GsaI	CCCAGC	2 cut(s)	99, 807
HaeIII	GGCC	7 cut(s)	119, 200, 272, 493, 540, 758, 809
HapII	CCGG	4 cut(s)	72, 218, 258, 276
HgaI	GACGC	1 cut(s)	12
HhaI	GCGC	1 cut(s)	167
Hin1I	GRCGYC	1 cut(s)	317
Hin1II	CATG	4 cut(s)	290, 327, 595, 736
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HindIII	AAGCTT	1 cut(s)	310
HinfI	GANTC	1 cut(s)	453
HpaII	CCGG	4 cut(s)	72, 218, 258, 276
HphI	GGTGA	1 cut(s)	86
Hpy166II	GTNNAC	1 cut(s)	436
Hpy188III	TCNNGA	5 cut(s)	296, 471, 479, 576, 637
Hpy8I	GTNNAC	1 cut(s)	436
Hpy99I	CGWCG	1 cut(s)	379
HpyAV	CCTTC	7 cut(s)	190, 302, 313, 325, 367, 524, 686
HpyCH4III	ACNGT	4 cut(s)	156, 379, 430, 600
HpyCH4IV	ACGT	1 cut(s)	317
HpyCH4V	TGCA	5 cut(s)	146, 254, 587, 781, 840
HpyF10VI	GCNNNNNNNGC	6 cut(s)	92, 143, 380, 509, 593, 713
HpyF3I	CTNAG	4 cut(s)	81, 496, 558, 864
HpySE526I	ACGT	1 cut(s)	317
Hsp92I	GRCGYC	1 cut(s)	317
Hsp92II	CATG	4 cut(s)	290, 327, 595, 736
HspAI	GCGC	1 cut(s)	165
Kzo9I	GATC	1 cut(s)	633
LmnI	GCTCC	1 cut(s)	74
Lsp1109I	GCAGC	7 cut(s)	149, 234, 237, 266, 370, 490, 765
LweI	GCATC	1 cut(s)	289
MaeII	ACGT	1 cut(s)	317
MaeIII	GTNAC	1 cut(s)	404
MalI	GATC	1 cut(s)	635
MboI	GATC	1 cut(s)	633
MboII	GAAGA	3 cut(s)	10, 595, 815
MhlI	GDGCHC	1 cut(s)	108
MlsI	TGGCCA	1 cut(s)	272
MluCI	AATT	7 cut(s)	12, 42, 125, 521, 565, 726, 811
MluNI	TGGCCA	1 cut(s)	272
MnlI	CCTC	4 cut(s)	70, 76, 339, 620
Mox20I	TGGCCA	1 cut(s)	272
MscI	TGGCCA	1 cut(s)	272
MseI	TTAA	4 cut(s)	38, 128, 701, 725
Msp20I	TGGCCA	1 cut(s)	272
MspA1I	CMGCKG	1 cut(s)	716
MspI	CCGG	4 cut(s)	72, 218, 258, 276
MspR9I	CCNGG	2 cut(s)	116, 219
Mva1269I	GAATGC	2 cut(s)	146, 180
MvaI	CCWGG	1 cut(s)	116
MvnI	CGCG	2 cut(s)	23, 707
MwoI	GCNNNNNNNGC	6 cut(s)	92, 143, 380, 509, 593, 713
NciI	CCSGG	1 cut(s)	219
NdeI	CATATG	1 cut(s)	857
NdeII	GATC	1 cut(s)	633
NlaIII	CATG	4 cut(s)	290, 327, 595, 736
NlaIV	GGNNCC	1 cut(s)	808
NmeAIII	GCCGAG	1 cut(s)	784
NspI	RCATGY	1 cut(s)	736
NspV	TTCGAA	1 cut(s)	306
PaeR7I	CTCGAG	1 cut(s)	576
PceI	AGGCCT	1 cut(s)	540
PciI	ACATGT	1 cut(s)	732
PctI	GAATGC	2 cut(s)	146, 180
PfeI	GAWTC	1 cut(s)	453
PkrI	GCNGC	8 cut(s)	139, 224, 227, 256, 385, 505, 709, 780
Ple19I	CGATCG	1 cut(s)	636
PscI	ACATGT	1 cut(s)	732
Psp6I	CCWGG	1 cut(s)	114
PspFI	CCCAGC	2 cut(s)	95, 803
PspGI	CCWGG	1 cut(s)	114
PspN4I	GGNNCC	1 cut(s)	808
PspPI	GGNCC	3 cut(s)	118, 492, 807
PstI	CTGCAG	2 cut(s)	589, 783
PvuI	CGATCG	1 cut(s)	636
RsaI	GTAC	2 cut(s)	153, 427
RsaNI	GTAC	2 cut(s)	152, 426
SaqAI	TTAA	4 cut(s)	38, 128, 701, 725
SatI	GCNGC	8 cut(s)	138, 223, 226, 255, 384, 504, 708, 779
Sau3AI	GATC	1 cut(s)	633
Sau96I	GGNCC	3 cut(s)	118, 492, 807
ScrFI	CCNGG	2 cut(s)	116, 219
SduI	GDGCHC	1 cut(s)	108
SetI	ASST	8 cut(s)	97, 208, 249, 314, 320, 559, 765, 780
SfaNI	GCATC	1 cut(s)	289
SfcI	CTRYAG	2 cut(s)	585, 779
Sfr274I	CTCGAG	1 cut(s)	576
SfuI	TTCGAA	1 cut(s)	306
SlaI	CTCGAG	1 cut(s)	576
SmlI	CTYRAG	1 cut(s)	576
SmoI	CTYRAG	1 cut(s)	576
Sse9I	AATT	7 cut(s)	12, 42, 125, 521, 565, 726, 811
SseBI	AGGCCT	1 cut(s)	540
SsiI	CCGC	2 cut(s)	707, 716
StuI	AGGCCT	1 cut(s)	540
StyD4I	CCNGG	2 cut(s)	114, 217
StyI	CCWWGG	2 cut(s)	459, 541
TaaI	ACNGT	4 cut(s)	156, 379, 430, 600
TaiI	ACGT	1 cut(s)	320
TaqI	TCGA	4 cut(s)	306, 577, 650, 744
TasI	AATT	7 cut(s)	12, 42, 125, 521, 565, 726, 811
TauI	GCSGC	1 cut(s)	710
TfiI	GAWTC	1 cut(s)	453
Tru1I	TTAA	4 cut(s)	38, 128, 701, 725
Tru9I	TTAA	4 cut(s)	38, 128, 701, 725
TscAI	CASTG	2 cut(s)	367, 603
TseI	GCWGC	7 cut(s)	137, 222, 225, 254, 383, 503, 778
TspDTI	ATGAA	4 cut(s)	17, 271, 275, 782
TspRI	CASTG	2 cut(s)	367, 603
XapI	RAATTY	1 cut(s)	565
XceI	RCATGY	1 cut(s)	736
XhoI	CTCGAG	1 cut(s)	576
ZraI	GACGTC	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.