Prupe.3G093700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
N/A
Physical Location & Seq
Reverse (-)
7018577 .. 7018936
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G093700.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 327 bp
ATGCAGGCTCTAATGGGAAACAAAATCCGAGCAGCATCACCATCTTTTGCTTCTTCTTCTTCTCCTTCACGCTCATTCCGATGCAGCCTGCACAAGGGGAGGGGCCCACAAGCTGGGAAATCAAGCAGTTCTACAATCACAGCCGTCCATCATGTTAACAACCAATCCACGAAGATGAAGATGATGAAGAAACTGATGATGACCAACTCCAAAGCACACCTTCTCAATGCCTTTCTCAAACTGATGATCAAGCCCTCCAGCCATCACCTTCAAAGGAGGATGAATTTCAAGCCCAGGCCCACCAGGTTTTGTTTGATGAACGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.09

Weight (kDa)

12.0

Isoelectric Point (pI)

53.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 113
AcsI RAATTY 1 cut(s) 283
AfiI CCNNNNNNNGG 2 cut(s) 94, 113
AgsI TTSAA 2 cut(s) 272, 289
AjnI CCWGG 2 cut(s) 293, 302
AluBI AGCT 1 cut(s) 113
AluI AGCT 1 cut(s) 113
AoxI GGCC 2 cut(s) 103, 296
ApaI GGGCCC 1 cut(s) 107
ApeKI GCWGC 2 cut(s) 32, 84
ApoI RAATTY 1 cut(s) 283
AspS9I GGNCC 3 cut(s) 103, 104, 297
AsuHPI GGTGA 2 cut(s) 30, 257
BaeGI GKGCMC 1 cut(s) 107
BanII GRGCYC 1 cut(s) 107
BbvI GCAGC 2 cut(s) 44, 96
BccI CCATC 3 cut(s) 49, 156, 270
BceAI ACGGC 1 cut(s) 128
BciT130I CCWGG 2 cut(s) 295, 304
BclI TGATCA 1 cut(s) 246
BisI GCNGC 2 cut(s) 33, 85
BlsI GCNGC 2 cut(s) 34, 86
Bme1390I CCNGG 2 cut(s) 295, 304
BmgT120I GGNCC 3 cut(s) 103, 104, 297
BmiI GGNNCC 2 cut(s) 104, 105
BmrFI CCNGG 2 cut(s) 295, 304
BmsI GCATC 2 cut(s) 44, 71
BpmI CTGGAG 1 cut(s) 241
BsaJI CCNNGG 1 cut(s) 293
Bsc4I CCNNNNNNNGG 2 cut(s) 94, 113
BseBI CCWGG 2 cut(s) 295, 304
BseDI CCNNGG 1 cut(s) 293
BseGI GGATG 1 cut(s) 285
BseLI CCNNNNNNNGG 2 cut(s) 94, 113
BseSI GKGCMC 1 cut(s) 107
BseXI GCAGC 2 cut(s) 44, 96
BseYI CCCAGC 1 cut(s) 113
BsgI GTGCAG 1 cut(s) 74
BshFI GGCC 2 cut(s) 105, 298
BslI CCNNNNNNNGG 2 cut(s) 94, 113
BsnI GGCC 2 cut(s) 105, 298
Bsp120I GGGCCC 1 cut(s) 103
Bsp1286I GDGCHC 1 cut(s) 107
Bsp143I GATC 1 cut(s) 246
BspANI GGCC 2 cut(s) 105, 298
BspLI GGNNCC 2 cut(s) 104, 105
BssECI CCNNGG 1 cut(s) 293
BssMI GATC 1 cut(s) 246
Bst2UI CCWGG 2 cut(s) 295, 304
BstC8I GCNNGC 2 cut(s) 6, 89
BstENI CCTNNNNNAGG 1 cut(s) 92
BstF5I GGATG 1 cut(s) 285
BstKTI GATC 1 cut(s) 249
BstMBI GATC 1 cut(s) 246
BstNI CCWGG 2 cut(s) 295, 304
BstSCI CCNGG 2 cut(s) 293, 302
BstSLI GKGCMC 1 cut(s) 107
BstV1I GCAGC 2 cut(s) 44, 96
BsuRI GGCC 2 cut(s) 105, 298
BtsCI GGATG 1 cut(s) 285
Cac8I GCNNGC 2 cut(s) 6, 89
Cfr13I GGNCC 3 cut(s) 103, 104, 297
CsiI ACCWGGT 1 cut(s) 302
CviAII CATG 1 cut(s) 152
CviJI RGCY 9 cut(s) 8, 87, 105, 113, 143, 253, 261, 292, 298
CviKI_1 RGCY 9 cut(s) 8, 87, 105, 113, 143, 253, 261, 292, 298
DpnI GATC 1 cut(s) 248
DpnII GATC 1 cut(s) 246
Eco24I GRGCYC 1 cut(s) 107
EcoNI CCTNNNNNAGG 1 cut(s) 92
EcoO109I RGGNCCY 1 cut(s) 103
EcoRII CCWGG 2 cut(s) 293, 302
EcoT38I GRGCYC 1 cut(s) 107
FaeI CATG 1 cut(s) 155
FaiI YATR 2 cut(s) 153, 325
FalI AAGNNNNNCTT 2 cut(s) 204, 236
FatI CATG 1 cut(s) 151
FbaI TGATCA 1 cut(s) 246
Fnu4HI GCNGC 2 cut(s) 33, 85
FokI GGATG 1 cut(s) 292
FriOI GRGCYC 1 cut(s) 107
Fsp4HI GCNGC 2 cut(s) 33, 85
GluI GCNGC 2 cut(s) 33, 85
GsaI CCCAGC 1 cut(s) 117
GsuI CTGGAG 1 cut(s) 241
HaeIII GGCC 2 cut(s) 105, 298
Hin1II CATG 1 cut(s) 155
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HpaI GTTAAC 1 cut(s) 157
HphI GGTGA 2 cut(s) 30, 257
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 2 cut(s) 29, 80
Hpy8I GTNNAC 1 cut(s) 157
HpyAV CCTTC 3 cut(s) 75, 230, 278
HpyCH4IV ACGT 1 cut(s) 321
HpyCH4V TGCA 3 cut(s) 4, 84, 91
HpySE526I ACGT 1 cut(s) 321
Hsp92II CATG 1 cut(s) 155
Ksp22I TGATCA 1 cut(s) 246
KspAI GTTAAC 1 cut(s) 157
Kzo9I GATC 1 cut(s) 246
LpnPI CCDG 7 cut(s) 99, 101, 271, 280, 289, 307, 316
Lsp1109I GCAGC 2 cut(s) 44, 96
LweI GCATC 2 cut(s) 44, 71
MabI ACCWGGT 1 cut(s) 302
MaeII ACGT 1 cut(s) 321
MalI GATC 1 cut(s) 248
MboI GATC 1 cut(s) 246
MboII GAAGA 6 cut(s) 45, 48, 51, 184, 190, 199
MhlI GDGCHC 1 cut(s) 107
MluCI AATT 1 cut(s) 283
MnlI CCTC 3 cut(s) 93, 265, 270
MseI TTAA 1 cut(s) 156
MslI CAYNNNNRTG 2 cut(s) 79, 173
MspR9I CCNGG 2 cut(s) 295, 304
MvaI CCWGG 2 cut(s) 295, 304
NdeII GATC 1 cut(s) 246
NlaIII CATG 1 cut(s) 155
NlaIV GGNNCC 2 cut(s) 104, 105
PcsI WCGNNNNNNNCGW 1 cut(s) 76
PflMI CCANNNNNTGG 1 cut(s) 113
PkrI GCNGC 2 cut(s) 34, 86
Psp6I CCWGG 2 cut(s) 293, 302
PspFI CCCAGC 1 cut(s) 113
PspGI CCWGG 2 cut(s) 293, 302
PspN4I GGNNCC 2 cut(s) 104, 105
PspOMI GGGCCC 1 cut(s) 103
PspPI GGNCC 3 cut(s) 103, 104, 297
RseI CAYNNNNRTG 2 cut(s) 79, 173
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 2 cut(s) 33, 85
Sau3AI GATC 1 cut(s) 246
Sau96I GGNCC 3 cut(s) 103, 104, 297
ScrFI CCNGG 2 cut(s) 295, 304
SduI GDGCHC 1 cut(s) 107
SetI ASST 5 cut(s) 115, 222, 270, 308, 324
SexAI ACCWGGT 1 cut(s) 302
SfaNI GCATC 2 cut(s) 44, 71
SmiMI CAYNNNNRTG 2 cut(s) 79, 173
Sse9I AATT 1 cut(s) 283
StyD4I CCNGG 2 cut(s) 293, 302
TaiI ACGT 1 cut(s) 324
TasI AATT 1 cut(s) 283
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TseI GCWGC 2 cut(s) 32, 84
TspDTI ATGAA 3 cut(s) 191, 200, 296
Van91I CCANNNNNTGG 1 cut(s) 113
XagI CCTNNNNNAGG 1 cut(s) 92
XapI RAATTY 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.