Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

7397706 .. 7403053

Gene Structure 5348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G097400.1_v2.0.a1.CDS.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGCATGCCGATAGCTCTTCAGTTTCAGGCCATGGCCAAACTGTTTGTGTCACCGGAGCTGGAGGCTTCATTGCTTCCTGGATTGTCAAACTTTTGCTAGAAAGAGGCTACATTGTGAGGGGAACCTTGAGAAACCCAGATGACCCAAAGAATGCTCATTTGAGGGAGCTTGAAGGAGCTCAAGATAGGTTGACTTTACGTAAAGCTGATCTTCTTGACTTTGAGAGCCTTAAAGAAGCCATCAACGGTTGTGATGGCGTTTTTCACACAGCATCACCGGTTACGGATGACCCAGAACAAATGATAGAGCCCGCAGTGAATGGAACGAAGAATGTGATTGTTGCGGCGGCAGAAGCCAAGGTTAAAAGGGTTGTGTTCACGTCGTCAATTGGTACAGTGTACATGAACCCCACCAGGGGCCCTGCTGTGATGGTCGATGAGTCTTGTTGGAGTAACCTTGAATATTGCAAGAACACCAAGGGTTTCTATAGGAAATTAGAAAAGGTCAAGTCGGCAAAGAAAGTTTGTGAGATTTTAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0006950 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009409 GO:0009628 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0016491 GO:0016620 GO:0016621 GO:0016903 GO:0019438 GO:0019748 GO:0042752 GO:0042754 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0048511 GO:0048519 GO:0050789 GO:0050896 GO:0055114 GO:0065007 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

Epimerase

Protein Analysis

181

Amino Acids

19.67

Weight (kDa)

8.25

Isoelectric Point (pI)

28.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	312, 344, 347
AcoI	YGGCCR	1 cut(s)	34
AfaI	GTAC	2 cut(s)	394, 401
AfiI	CCNNNNNNNGG	2 cut(s)	415, 416
AgeI	ACCGGT	1 cut(s)	277
AgsI	TTSAA	2 cut(s)	173, 461
AjiI	CACGTC	1 cut(s)	381
AjnI	CCWGG	2 cut(s)	77, 413
AluBI	AGCT	5 cut(s)	15, 59, 169, 179, 206
AluI	AGCT	5 cut(s)	15, 59, 169, 179, 206
Alw21I	GWGCWC	1 cut(s)	181
AoxI	GGCC	3 cut(s)	28, 34, 418
ApaI	GGGCCC	1 cut(s)	422
AsiGI	ACCGGT	1 cut(s)	277
AspS9I	GGNCC	2 cut(s)	418, 419
AsuHPI	GGTGA	2 cut(s)	43, 267
BaeGI	GKGCMC	1 cut(s)	422
BalI	TGGCCA	1 cut(s)	36
BanII	GRGCYC	3 cut(s)	181, 312, 422
Bbv12I	GWGCWC	1 cut(s)	181
BccI	CCATC	3 cut(s)	248, 248, 424
BciT130I	CCWGG	2 cut(s)	79, 415
BfaI	CTAG	1 cut(s)	98
BfmI	CTRYAG	1 cut(s)	487
BisI	GCNGC	2 cut(s)	345, 348
BlsI	GCNGC	2 cut(s)	346, 349
Bme1390I	CCNGG	2 cut(s)	79, 415
BmgBI	CACGTC	1 cut(s)	381
BmgT120I	GGNCC	2 cut(s)	418, 419
BmiI	GGNNCC	3 cut(s)	124, 419, 420
BmrFI	CCNGG	2 cut(s)	79, 415
BmsI	GCATC	1 cut(s)	281
BpmI	CTGGAG	1 cut(s)	81
BpuEI	CTTGAG	2 cut(s)	148, 165
BsaAI	YACGTR	1 cut(s)	200
BsaJI	CCNNGG	4 cut(s)	31, 357, 414, 477
BsaWI	WCCGGW	2 cut(s)	53, 277
Bsc4I	CCNNNNNNNGG	2 cut(s)	415, 416
Bse118I	RCCGGY	1 cut(s)	277
Bse3DI	GCAATG	1 cut(s)	69
BseBI	CCWGG	2 cut(s)	79, 415
BseDI	CCNNGG	4 cut(s)	31, 357, 414, 477
BseGI	GGATG	1 cut(s)	292
BseLI	CCNNNNNNNGG	2 cut(s)	415, 416
BseMI	GCAATG	1 cut(s)	69
BseSI	GKGCMC	1 cut(s)	422
BshFI	GGCC	3 cut(s)	30, 36, 420
BshTI	ACCGGT	1 cut(s)	277
BsiHKAI	GWGCWC	1 cut(s)	181
BsiSI	CCGG	2 cut(s)	54, 278
BslI	CCNNNNNNNGG	2 cut(s)	415, 416
BsmI	GAATGC	1 cut(s)	157
BsnI	GGCC	3 cut(s)	30, 36, 420
Bsp120I	GGGCCC	1 cut(s)	418
Bsp1286I	GDGCHC	3 cut(s)	181, 312, 422
Bsp1407I	TGTACA	1 cut(s)	399
Bsp143I	GATC	1 cut(s)	208
Bsp19I	CCATGG	1 cut(s)	31
BspACI	CCGC	3 cut(s)	312, 344, 347
BspANI	GGCC	3 cut(s)	30, 36, 420
BspLI	GGNNCC	3 cut(s)	124, 419, 420
BspQI	GCTCTTC	1 cut(s)	22
BsrDI	GCAATG	1 cut(s)	69
BsrFI	RCCGGY	1 cut(s)	277
BsrGI	TGTACA	1 cut(s)	399
BssAI	RCCGGY	1 cut(s)	277
BssECI	CCNNGG	4 cut(s)	31, 357, 414, 477
BssMI	GATC	1 cut(s)	208
BssT1I	CCWWGG	3 cut(s)	31, 357, 477
Bst2UI	CCWGG	2 cut(s)	79, 415
Bst4CI	ACNGT	3 cut(s)	43, 248, 397
Bst6I	CTCTTC	1 cut(s)	22
BstAUI	TGTACA	1 cut(s)	399
BstBAI	YACGTR	1 cut(s)	200
BstC8I	GCNNGC	2 cut(s)	6, 312
BstDSI	CCRYGG	1 cut(s)	31
BstF5I	GGATG	1 cut(s)	292
BstKTI	GATC	1 cut(s)	211
BstMBI	GATC	1 cut(s)	208
BstMWI	GCNNNNNNNGC	1 cut(s)	353
BstNI	CCWGG	2 cut(s)	79, 415
BstNSI	RCATGY	1 cut(s)	8
BstSCI	CCNGG	2 cut(s)	77, 413
BstSFI	CTRYAG	1 cut(s)	487
BstSLI	GKGCMC	1 cut(s)	422
BstSNI	TACGTA	1 cut(s)	200
BsuRI	GGCC	3 cut(s)	30, 36, 420
BtgI	CCRYGG	1 cut(s)	31
BtrI	CACGTC	1 cut(s)	381
BtsCI	GGATG	1 cut(s)	292
BtsI	GCAGTG	1 cut(s)	321
BtsIMutI	CAGTG	2 cut(s)	321, 402
Cac8I	GCNNGC	2 cut(s)	6, 312
Cfr10I	RCCGGY	1 cut(s)	277
Cfr13I	GGNCC	2 cut(s)	418, 419
Csp6I	GTAC	2 cut(s)	393, 400
CspAI	ACCGGT	1 cut(s)	277
CviAII	CATG	3 cut(s)	5, 32, 403
CviQI	GTAC	2 cut(s)	393, 400
DpnI	GATC	1 cut(s)	210
DpnII	GATC	1 cut(s)	208
DraI	TTTAAA	1 cut(s)	537
EaeI	YGGCCR	1 cut(s)	34
Eam1104I	CTCTTC	1 cut(s)	22
EarI	CTCTTC	1 cut(s)	22
Ecl136II	GAGCTC	1 cut(s)	179
Eco105I	TACGTA	1 cut(s)	200
Eco130I	CCWWGG	3 cut(s)	31, 357, 477
Eco24I	GRGCYC	3 cut(s)	181, 312, 422
Eco53kI	GAGCTC	1 cut(s)	179
EcoICRI	GAGCTC	1 cut(s)	179
EcoO109I	RGGNCCY	2 cut(s)	418, 419
EcoRII	CCWGG	2 cut(s)	77, 413
EcoT14I	CCWWGG	3 cut(s)	31, 357, 477
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	3 cut(s)	181, 312, 422
ErhI	CCWWGG	3 cut(s)	31, 357, 477
FaeI	CATG	3 cut(s)	8, 35, 406
FaiI	YATR	4 cut(s)	6, 33, 404, 489
FalI	AAGNNNNNCTT	2 cut(s)	195, 227
FatI	CATG	3 cut(s)	4, 31, 402
FauI	CCCGC	1 cut(s)	319
Fnu4HI	GCNGC	2 cut(s)	345, 348
FokI	GGATG	1 cut(s)	299
FriOI	GRGCYC	3 cut(s)	181, 312, 422
Fsp4HI	GCNGC	2 cut(s)	345, 348
FspBI	CTAG	1 cut(s)	98
GluI	GCNGC	2 cut(s)	345, 348
GsuI	CTGGAG	1 cut(s)	81
HaeIII	GGCC	3 cut(s)	30, 36, 420
HapII	CCGG	2 cut(s)	54, 278
Hin1II	CATG	3 cut(s)	8, 35, 406
HincII	GTYRAC	1 cut(s)	192
HindII	GTYRAC	1 cut(s)	192
HinfI	GANTC	1 cut(s)	440
HpaII	CCGG	2 cut(s)	54, 278
HphI	GGTGA	2 cut(s)	43, 267
Hpy166II	GTNNAC	3 cut(s)	192, 378, 400
Hpy188III	TCNNGA	2 cut(s)	182, 215
Hpy8I	GTNNAC	3 cut(s)	192, 378, 400
Hpy99I	CGWCG	1 cut(s)	385
HpyAV	CCTTC	1 cut(s)	167
HpyCH4III	ACNGT	3 cut(s)	43, 248, 397
HpyCH4IV	ACGT	2 cut(s)	199, 380
HpyCH4V	TGCA	2 cut(s)	4, 468
HpyF10VI	GCNNNNNNNGC	1 cut(s)	353
HpySE526I	ACGT	2 cut(s)	199, 380
Hsp92II	CATG	3 cut(s)	8, 35, 406
Kzo9I	GATC	1 cut(s)	208
LguI	GCTCTTC	1 cut(s)	22
LmnI	GCTCC	3 cut(s)	56, 166, 176
LweI	GCATC	1 cut(s)	281
MaeI	CTAG	1 cut(s)	98
MaeII	ACGT	2 cut(s)	199, 380
MaeIII	GTNAC	3 cut(s)	49, 280, 452
MalI	GATC	1 cut(s)	210
MboI	GATC	1 cut(s)	208
MboII	GAAGA	3 cut(s)	9, 203, 340
MfeI	CAATTG	1 cut(s)	387
MhlI	GDGCHC	3 cut(s)	181, 312, 422
MlsI	TGGCCA	1 cut(s)	36
MluCI	AATT	2 cut(s)	387, 494
MluNI	TGGCCA	1 cut(s)	36
MlyI	GAGTC	1 cut(s)	449
MmeI	TCCRAC	1 cut(s)	428
MnlI	CCTC	4 cut(s)	56, 98, 111, 156
Mox20I	TGGCCA	1 cut(s)	36
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	36
MseI	TTAA	3 cut(s)	231, 363, 536
Msp20I	TGGCCA	1 cut(s)	36
MspI	CCGG	2 cut(s)	54, 278
MspR9I	CCNGG	2 cut(s)	79, 415
MunI	CAATTG	1 cut(s)	387
Mva1269I	GAATGC	1 cut(s)	157
MvaI	CCWGG	2 cut(s)	79, 415
MwoI	GCNNNNNNNGC	1 cut(s)	353
NcoI	CCATGG	1 cut(s)	31
NdeII	GATC	1 cut(s)	208
NlaIII	CATG	3 cut(s)	8, 35, 406
NlaIV	GGNNCC	3 cut(s)	124, 419, 420
NmuCI	GTSAC	1 cut(s)	49
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
PaeI	GCATGC	1 cut(s)	8
PciSI	GCTCTTC	1 cut(s)	22
PctI	GAATGC	1 cut(s)	157
PfoI	TCCNGGA	1 cut(s)	77
PinAI	ACCGGT	1 cut(s)	277
PkrI	GCNGC	2 cut(s)	346, 349
PleI	GAGTC	1 cut(s)	448
PpsI	GAGTC	1 cut(s)	448
Ppu21I	YACGTR	1 cut(s)	200
Psp124BI	GAGCTC	1 cut(s)	181
Psp6I	CCWGG	2 cut(s)	77, 413
PspGI	CCWGG	2 cut(s)	77, 413
PspN4I	GGNNCC	3 cut(s)	124, 419, 420
PspOMI	GGGCCC	1 cut(s)	418
PspPI	GGNCC	2 cut(s)	418, 419
RsaI	GTAC	2 cut(s)	394, 401
RsaNI	GTAC	2 cut(s)	393, 400
SacI	GAGCTC	1 cut(s)	181
SapI	GCTCTTC	1 cut(s)	22
SaqAI	TTAA	3 cut(s)	231, 363, 536
SatI	GCNGC	2 cut(s)	345, 348
Sau3AI	GATC	1 cut(s)	208
Sau96I	GGNCC	2 cut(s)	418, 419
SchI	GAGTC	1 cut(s)	449
ScrFI	CCNGG	2 cut(s)	79, 415
SduI	GDGCHC	3 cut(s)	181, 312, 422
SfaNI	GCATC	1 cut(s)	281
SfcI	CTRYAG	1 cut(s)	487
SmlI	CTYRAG	2 cut(s)	127, 180
SmoI	CTYRAG	2 cut(s)	127, 180
SnaBI	TACGTA	1 cut(s)	200
SphI	GCATGC	1 cut(s)	8
Sse9I	AATT	2 cut(s)	387, 494
SsiI	CCGC	3 cut(s)	312, 344, 347
SspI	AATATT	1 cut(s)	464
SspMI	CTAG	1 cut(s)	98
SstI	GAGCTC	1 cut(s)	181
StyD4I	CCNGG	2 cut(s)	77, 413
StyI	CCWWGG	3 cut(s)	31, 357, 477
TaaI	ACNGT	3 cut(s)	43, 248, 397
TaiI	ACGT	2 cut(s)	202, 383
TaqI	TCGA	1 cut(s)	435
TasI	AATT	2 cut(s)	387, 494
TatI	WGTACW	1 cut(s)	399
TauI	GCSGC	2 cut(s)	347, 350
Tru1I	TTAA	3 cut(s)	231, 363, 536
Tru9I	TTAA	3 cut(s)	231, 363, 536
TscAI	CASTG	2 cut(s)	321, 402
TseFI	GTSAC	1 cut(s)	49
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	2 cut(s)	58, 419
TspGWI	ACGGA	1 cut(s)	299
TspRI	CASTG	2 cut(s)	321, 402
XceI	RCATGY	1 cut(s)	8
XspI	CTAG	1 cut(s)	98
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.